Wall clock time and date at job start Tue Mar 31 2020 06:54:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99855 * 2 1 4 4 H 1.48497 * 109.47026 * 269.99601 * 3 2 1 5 5 H 1.48502 * 109.47125 * 29.99847 * 3 2 1 6 6 H 1.48499 * 109.47147 * 149.99877 * 3 2 1 7 7 C 1.37878 * 120.00097 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99541 * 359.97438 * 7 2 1 9 9 C 1.50705 * 119.99920 * 180.02562 * 7 2 1 10 10 C 1.53002 * 109.46700 * 180.02562 * 9 7 2 11 11 C 1.53007 * 109.46745 * 179.97438 * 10 9 7 12 12 N 1.46498 * 109.46792 * 179.97438 * 11 10 9 13 13 C 1.34780 * 119.99522 * 179.97438 * 12 11 10 14 14 O 1.21274 * 120.00213 * 0.02562 * 13 12 11 15 15 C 1.50703 * 119.99637 * 180.02562 * 13 12 11 16 16 O 1.42904 * 110.72928 * 328.39827 * 15 13 12 17 17 C 1.54341 * 110.82510 * 92.02839 * 15 13 12 18 18 C 1.51369 * 105.23137 * 144.37294 * 17 15 13 19 19 C 1.38490 * 130.39117 * 162.43983 * 18 17 15 20 20 C 1.38103 * 120.21478 * 180.24638 * 19 18 17 21 21 C 1.38254 * 119.93614 * 0.28341 * 20 19 18 22 22 C 1.38106 * 119.93398 * 359.97438 * 21 20 19 23 23 C 1.38217 * 109.75561 * 343.16138 * 18 17 15 24 24 C 1.51375 * 109.76143 * 359.64097 * 23 18 17 25 25 H 0.96999 * 120.00219 * 359.97438 * 1 2 3 26 26 H 1.08994 * 109.47113 * 59.99738 * 9 7 2 27 27 H 1.08998 * 109.46674 * 299.99320 * 9 7 2 28 28 H 1.08991 * 109.47154 * 59.99723 * 10 9 7 29 29 H 1.09007 * 109.47059 * 299.99330 * 10 9 7 30 30 H 1.08994 * 109.47076 * 59.99689 * 11 10 9 31 31 H 1.08998 * 109.46668 * 299.99298 * 11 10 9 32 32 H 0.96999 * 120.00021 * 359.97438 * 12 11 10 33 33 H 0.96702 * 113.99467 * 56.60173 * 16 15 13 34 34 H 1.09008 * 110.29978 * 263.49139 * 17 15 13 35 35 H 1.08995 * 110.30660 * 25.64093 * 17 15 13 36 36 H 1.08002 * 119.89478 * 0.52837 * 19 18 17 37 37 H 1.07997 * 120.03401 * 180.30507 * 20 19 18 38 38 H 1.08004 * 120.03135 * 180.02562 * 21 20 19 39 39 H 1.08000 * 119.89016 * 179.97438 * 22 21 20 40 40 H 1.09002 * 110.30456 * 136.33440 * 24 23 18 41 41 H 1.08999 * 110.29768 * 258.49082 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5116 -1.1940 0.0000 10 6 4.0216 -2.6365 -0.0014 11 6 5.5516 -2.6365 -0.0014 12 7 6.0399 -4.0177 -0.0022 13 6 7.3650 -4.2639 -0.0029 14 8 8.1531 -3.3421 -0.0024 15 6 7.8674 -5.6848 -0.0042 16 8 6.9630 -6.5417 0.6958 17 6 8.0979 -6.1839 -1.4464 18 6 9.3148 -7.0806 -1.3671 19 6 9.7836 -8.0374 -2.2518 20 6 10.9321 -8.7479 -1.9627 21 6 11.6134 -8.5080 -0.7839 22 6 11.1445 -7.5580 0.1021 23 6 9.9930 -6.8445 -0.1862 24 6 9.2832 -5.7666 0.6050 25 1 -0.4850 0.8400 0.0004 26 1 3.8746 -0.6807 0.8904 27 1 3.8752 -0.6797 -0.8895 28 1 3.6586 -3.1493 -0.8920 29 1 3.6579 -3.1513 0.8880 30 1 5.9150 -2.1235 0.8890 31 1 5.9148 -2.1219 -0.8910 32 1 5.4096 -4.7550 -0.0021 33 1 6.0597 -6.5259 0.3509 34 1 7.2320 -6.7472 -1.7945 35 1 8.2948 -5.3427 -2.1108 36 1 9.2519 -8.2255 -3.1729 37 1 11.2978 -9.4899 -2.6570 38 1 12.5120 -9.0624 -0.5565 39 1 11.6771 -7.3714 1.0229 40 1 9.2267 -6.0451 1.6573 41 1 9.7991 -4.8131 0.4923 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000365770643.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:45 Heat of formation + Delta-G solvation = -72.720446 kcal Electronic energy + Delta-G solvation = -21996.451617 eV Core-core repulsion = 18647.453740 eV Total energy + Delta-G solvation = -3348.997877 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.12756 -39.37287 -37.19553 -35.80356 -34.26226 -33.30811 -31.74630 -31.48957 -29.06776 -27.76546 -27.26778 -24.11367 -22.59256 -21.64140 -21.30955 -20.73225 -19.94600 -18.59005 -16.87854 -16.59308 -16.31000 -16.20699 -15.50828 -15.26566 -14.86291 -14.59346 -14.18457 -14.03352 -13.78288 -13.55169 -13.34896 -13.09532 -12.89688 -12.74586 -12.17495 -12.04343 -11.99833 -11.90851 -11.52163 -11.15542 -11.08630 -10.98527 -10.92709 -10.22307 -10.02097 -9.81890 -9.54855 -9.27561 -9.07954 -9.04753 -8.79252 -8.59379 -6.10035 -4.09167 1.07621 1.12157 2.36678 2.97995 3.28227 3.36179 3.39882 3.48103 3.72058 3.96196 4.13021 4.40834 4.51270 4.63938 4.75386 4.77306 4.89498 5.21211 5.22210 5.23845 5.31560 5.38196 5.45189 5.49563 5.55624 5.61198 5.80282 5.84461 5.91420 6.14842 6.18877 6.23268 6.34774 6.35635 6.55570 6.70544 6.71589 7.02136 7.16425 7.30037 7.44591 7.71549 8.04709 8.45784 8.93383 9.51969 11.03089 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.043084 B = 0.002565 C = 0.002524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 649.741896 B =10911.465140 C =11088.801639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.067 3.933 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.265 1.265 7 C -0.523 4.523 8 H 0.072 0.928 9 C -0.011 4.011 10 C -0.114 4.114 11 C 0.113 3.887 12 N -0.719 5.719 13 C 0.497 3.503 14 O -0.531 6.531 15 C 0.117 3.883 16 O -0.536 6.536 17 C -0.099 4.099 18 C -0.091 4.091 19 C -0.104 4.104 20 C -0.122 4.122 21 C -0.119 4.119 22 C -0.105 4.105 23 C -0.086 4.086 24 C -0.063 4.063 25 H 0.264 0.736 26 H 0.019 0.981 27 H 0.014 0.986 28 H 0.061 0.939 29 H 0.062 0.938 30 H 0.067 0.933 31 H 0.066 0.934 32 H 0.397 0.603 33 H 0.379 0.621 34 H 0.090 0.910 35 H 0.095 0.905 36 H 0.121 0.879 37 H 0.124 0.876 38 H 0.124 0.876 39 H 0.122 0.878 40 H 0.091 0.909 41 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.994 -17.950 -2.551 27.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.135 4.135 3 Si 0.707 3.293 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.189 1.189 7 C -0.561 4.561 8 H 0.090 0.910 9 C -0.049 4.049 10 C -0.152 4.152 11 C -0.010 4.010 12 N -0.370 5.370 13 C 0.281 3.719 14 O -0.408 6.408 15 C 0.073 3.927 16 O -0.343 6.343 17 C -0.136 4.136 18 C -0.092 4.092 19 C -0.122 4.122 20 C -0.140 4.140 21 C -0.137 4.137 22 C -0.123 4.123 23 C -0.086 4.086 24 C -0.100 4.100 25 H 0.073 0.927 26 H 0.037 0.963 27 H 0.033 0.967 28 H 0.079 0.921 29 H 0.081 0.919 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.231 0.769 33 H 0.228 0.772 34 H 0.109 0.891 35 H 0.114 0.886 36 H 0.139 0.861 37 H 0.142 0.858 38 H 0.142 0.858 39 H 0.140 0.860 40 H 0.110 0.890 41 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 21.917 -17.267 -2.195 27.988 hybrid contribution -0.577 0.654 -0.397 0.958 sum 21.340 -16.614 -2.592 27.168 Atomic orbital electron populations 1.69910 1.06310 1.27003 1.50853 1.25034 0.94761 0.99258 0.94437 0.86774 0.80396 0.83528 0.78588 1.20241 1.21329 1.18915 1.21080 0.89243 0.94523 1.51257 0.90991 1.19503 0.97344 0.91358 0.96697 1.21721 0.90388 1.01231 1.01824 1.21732 0.96369 0.80686 1.02188 1.46146 1.06484 1.10315 1.74082 1.20883 0.83072 0.91207 0.76750 1.90714 1.55195 1.45554 1.49301 1.21952 0.91689 0.86196 0.92863 1.86671 1.22778 1.65733 1.59076 1.21633 0.97109 0.99022 0.95858 1.20331 0.96745 0.96852 0.95227 1.20596 0.96790 0.95720 0.99120 1.21026 0.95523 1.00032 0.97441 1.21041 1.00019 0.98197 0.94461 1.20604 0.95616 0.96212 0.99916 1.20458 0.95442 0.96956 0.95701 1.20967 0.90091 0.98881 1.00044 0.92656 0.96271 0.96737 0.92055 0.91950 0.91505 0.91524 0.76852 0.77249 0.89139 0.88632 0.86130 0.85839 0.85820 0.86027 0.89020 0.86829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.41 13.96 55.43 0.77 -26.64 16 2 C 0.07 1.91 5.47 -17.82 -0.10 1.81 16 3 Si 0.88 21.47 27.47 -169.99 -4.67 16.80 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 6 H -0.26 -6.21 6.54 56.52 0.37 -5.84 16 7 C -0.52 -14.46 9.66 -34.44 -0.33 -14.79 16 8 H 0.07 2.12 7.99 -52.48 -0.42 1.70 16 9 C -0.01 -0.25 4.04 -27.88 -0.11 -0.36 16 10 C -0.11 -2.01 5.27 -26.73 -0.14 -2.15 16 11 C 0.11 1.76 5.67 -4.04 -0.02 1.73 16 12 N -0.72 -8.96 5.48 -60.29 -0.33 -9.29 16 13 C 0.50 6.66 6.74 -10.98 -0.07 6.58 16 14 O -0.53 -9.03 15.68 5.56 0.09 -8.94 16 15 C 0.12 1.27 1.34 -90.36 -0.12 1.15 16 16 O -0.54 -5.31 13.03 -35.23 -0.46 -5.77 16 17 C -0.10 -0.94 6.06 -26.85 -0.16 -1.11 16 18 C -0.09 -0.94 6.14 -104.21 -0.64 -1.58 16 19 C -0.10 -0.94 10.04 -39.54 -0.40 -1.33 16 20 C -0.12 -0.99 10.05 -39.63 -0.40 -1.39 16 21 C -0.12 -0.98 10.05 -39.62 -0.40 -1.37 16 22 C -0.11 -0.98 10.04 -39.53 -0.40 -1.38 16 23 C -0.09 -0.92 6.14 -104.20 -0.64 -1.56 16 24 C -0.06 -0.70 6.00 -26.85 -0.16 -0.86 16 25 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 26 H 0.02 0.44 7.20 -51.93 -0.37 0.07 16 27 H 0.01 0.33 7.57 -51.93 -0.39 -0.07 16 28 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 29 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 30 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 31 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.40 3.71 6.90 -40.82 -0.28 3.43 16 33 H 0.38 2.31 7.55 45.56 0.34 2.65 16 34 H 0.09 0.69 8.11 -51.92 -0.42 0.27 16 35 H 0.10 0.95 7.89 -51.93 -0.41 0.54 16 36 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 37 H 0.12 0.71 8.06 -52.49 -0.42 0.29 16 38 H 0.12 0.72 8.06 -52.48 -0.42 0.29 16 39 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 40 H 0.09 0.98 8.11 -51.93 -0.42 0.56 16 41 H 0.11 1.36 6.90 -51.93 -0.36 1.01 16 LS Contribution 340.40 15.07 5.13 5.13 Total: -1.00 -33.68 340.40 -8.85 -42.53 By element: Atomic # 1 Polarization: 8.09 SS G_CDS: -5.28 Total: 2.81 kcal Atomic # 6 Polarization: -12.52 SS G_CDS: -4.09 Total: -16.62 kcal Atomic # 7 Polarization: -36.38 SS G_CDS: 0.44 Total: -35.93 kcal Atomic # 8 Polarization: -14.34 SS G_CDS: -0.37 Total: -14.71 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -4.67 Total: 16.80 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -33.68 -8.85 -42.53 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000365770643.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.194 kcal (2) G-P(sol) polarization free energy of solvation -33.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds