Wall clock time and date at job start Tue Mar 31 2020 06:54:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99855 * 2 1 4 4 H 1.48497 * 109.47026 * 269.99601 * 3 2 1 5 5 H 1.48502 * 109.47125 * 29.99847 * 3 2 1 6 6 H 1.48499 * 109.47147 * 149.99877 * 3 2 1 7 7 C 1.37878 * 120.00097 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99541 * 359.97438 * 7 2 1 9 9 C 1.50705 * 119.99920 * 180.02562 * 7 2 1 10 10 C 1.53002 * 109.46700 * 180.02562 * 9 7 2 11 11 C 1.53007 * 109.46745 * 179.97438 * 10 9 7 12 12 N 1.46498 * 109.46792 * 179.97438 * 11 10 9 13 13 C 1.34780 * 119.99522 * 179.97438 * 12 11 10 14 14 O 1.21274 * 120.00213 * 0.02562 * 13 12 11 15 15 C 1.50703 * 119.99637 * 180.02562 * 13 12 11 16 16 O 1.42904 * 110.72928 * 328.39827 * 15 13 12 17 17 C 1.54341 * 110.82510 * 92.02839 * 15 13 12 18 18 C 1.51369 * 105.23137 * 144.37294 * 17 15 13 19 19 C 1.38490 * 130.39117 * 162.43983 * 18 17 15 20 20 C 1.38103 * 120.21478 * 180.24638 * 19 18 17 21 21 C 1.38254 * 119.93614 * 0.28341 * 20 19 18 22 22 C 1.38106 * 119.93398 * 359.97438 * 21 20 19 23 23 C 1.38217 * 109.75561 * 343.16138 * 18 17 15 24 24 C 1.51375 * 109.76143 * 359.64097 * 23 18 17 25 25 H 0.96999 * 120.00219 * 359.97438 * 1 2 3 26 26 H 1.08994 * 109.47113 * 59.99738 * 9 7 2 27 27 H 1.08998 * 109.46674 * 299.99320 * 9 7 2 28 28 H 1.08991 * 109.47154 * 59.99723 * 10 9 7 29 29 H 1.09007 * 109.47059 * 299.99330 * 10 9 7 30 30 H 1.08994 * 109.47076 * 59.99689 * 11 10 9 31 31 H 1.08998 * 109.46668 * 299.99298 * 11 10 9 32 32 H 0.96999 * 120.00021 * 359.97438 * 12 11 10 33 33 H 0.96702 * 113.99467 * 56.60173 * 16 15 13 34 34 H 1.09008 * 110.29978 * 263.49139 * 17 15 13 35 35 H 1.08995 * 110.30660 * 25.64093 * 17 15 13 36 36 H 1.08002 * 119.89478 * 0.52837 * 19 18 17 37 37 H 1.07997 * 120.03401 * 180.30507 * 20 19 18 38 38 H 1.08004 * 120.03135 * 180.02562 * 21 20 19 39 39 H 1.08000 * 119.89016 * 179.97438 * 22 21 20 40 40 H 1.09002 * 110.30456 * 136.33440 * 24 23 18 41 41 H 1.08999 * 110.29768 * 258.49082 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5116 -1.1940 0.0000 10 6 4.0216 -2.6365 -0.0014 11 6 5.5516 -2.6365 -0.0014 12 7 6.0399 -4.0177 -0.0022 13 6 7.3650 -4.2639 -0.0029 14 8 8.1531 -3.3421 -0.0024 15 6 7.8674 -5.6848 -0.0042 16 8 6.9630 -6.5417 0.6958 17 6 8.0979 -6.1839 -1.4464 18 6 9.3148 -7.0806 -1.3671 19 6 9.7836 -8.0374 -2.2518 20 6 10.9321 -8.7479 -1.9627 21 6 11.6134 -8.5080 -0.7839 22 6 11.1445 -7.5580 0.1021 23 6 9.9930 -6.8445 -0.1862 24 6 9.2832 -5.7666 0.6050 25 1 -0.4850 0.8400 0.0004 26 1 3.8746 -0.6807 0.8904 27 1 3.8752 -0.6797 -0.8895 28 1 3.6586 -3.1493 -0.8920 29 1 3.6579 -3.1513 0.8880 30 1 5.9150 -2.1235 0.8890 31 1 5.9148 -2.1219 -0.8910 32 1 5.4096 -4.7550 -0.0021 33 1 6.0597 -6.5259 0.3509 34 1 7.2320 -6.7472 -1.7945 35 1 8.2948 -5.3427 -2.1108 36 1 9.2519 -8.2255 -3.1729 37 1 11.2978 -9.4899 -2.6570 38 1 12.5120 -9.0624 -0.5565 39 1 11.6771 -7.3714 1.0229 40 1 9.2267 -6.0451 1.6573 41 1 9.7991 -4.8131 0.4923 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000365770643.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:45 Heat of formation + Delta-G solvation = -96.116326 kcal Electronic energy + Delta-G solvation = -21997.466139 eV Core-core repulsion = 18647.453740 eV Total energy + Delta-G solvation = -3350.012399 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.99587 -40.26908 -38.04473 -37.14134 -35.34303 -34.81162 -33.26981 -32.40076 -29.99522 -28.86429 -28.43391 -25.40847 -23.81935 -22.46395 -22.23654 -21.99478 -21.02382 -19.62786 -18.88882 -17.38678 -17.29022 -17.06617 -16.61803 -16.35461 -16.09440 -15.63744 -15.45309 -15.29731 -14.79787 -14.54424 -14.42237 -14.06826 -13.88448 -13.81673 -13.67091 -13.62417 -12.88129 -12.73377 -12.72076 -12.71109 -12.18184 -11.98316 -11.83088 -11.73398 -11.69206 -11.60418 -11.33736 -10.76465 -10.70892 -10.22004 -9.73097 -9.48605 -8.29567 -6.33364 0.40493 0.46183 1.32172 1.36442 1.38496 1.49755 1.92988 2.35897 2.81632 2.95459 3.06265 3.15926 3.32797 3.68295 3.89372 4.06004 4.09917 4.15039 4.18522 4.25481 4.47648 4.52591 4.56029 4.59757 4.71544 4.76826 4.82109 4.86686 4.87826 5.02661 5.09974 5.18198 5.28738 5.47076 5.51957 5.55001 5.60554 5.64624 5.65987 6.09041 6.24309 6.26990 6.60373 6.74980 7.01739 7.31517 8.86685 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.043084 B = 0.002565 C = 0.002524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 649.741896 B =10911.465140 C =11088.801639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.004 3.996 3 Si 0.947 3.053 4 H -0.267 1.267 5 H -0.286 1.286 6 H -0.248 1.248 7 C -0.529 4.529 8 H 0.039 0.961 9 C -0.013 4.013 10 C -0.100 4.100 11 C 0.125 3.875 12 N -0.708 5.708 13 C 0.498 3.502 14 O -0.570 6.570 15 C 0.128 3.872 16 O -0.542 6.542 17 C -0.094 4.094 18 C -0.108 4.108 19 C -0.113 4.113 20 C -0.124 4.124 21 C -0.122 4.122 22 C -0.118 4.118 23 C -0.108 4.108 24 C -0.065 4.065 25 H 0.266 0.734 26 H 0.020 0.980 27 H 0.020 0.980 28 H 0.068 0.932 29 H 0.065 0.935 30 H 0.057 0.943 31 H 0.063 0.937 32 H 0.414 0.586 33 H 0.395 0.605 34 H 0.112 0.888 35 H 0.089 0.911 36 H 0.138 0.862 37 H 0.149 0.851 38 H 0.148 0.852 39 H 0.133 0.867 40 H 0.089 0.911 41 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.758 -19.058 -3.176 29.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.193 4.193 3 Si 0.770 3.230 4 H -0.192 1.192 5 H -0.212 1.212 6 H -0.172 1.172 7 C -0.567 4.567 8 H 0.057 0.943 9 C -0.051 4.051 10 C -0.138 4.138 11 C 0.001 3.999 12 N -0.360 5.360 13 C 0.283 3.717 14 O -0.449 6.449 15 C 0.084 3.916 16 O -0.350 6.350 17 C -0.132 4.132 18 C -0.108 4.108 19 C -0.131 4.131 20 C -0.142 4.142 21 C -0.140 4.140 22 C -0.136 4.136 23 C -0.108 4.108 24 C -0.102 4.102 25 H 0.075 0.925 26 H 0.038 0.962 27 H 0.039 0.961 28 H 0.087 0.913 29 H 0.084 0.916 30 H 0.076 0.924 31 H 0.081 0.919 32 H 0.251 0.749 33 H 0.247 0.753 34 H 0.131 0.869 35 H 0.107 0.893 36 H 0.156 0.844 37 H 0.167 0.833 38 H 0.166 0.834 39 H 0.151 0.849 40 H 0.108 0.892 41 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 23.665 -18.418 -2.823 30.121 hybrid contribution -1.152 0.885 -0.198 1.466 sum 22.513 -17.534 -3.021 28.695 Atomic orbital electron populations 1.70056 1.08196 1.28104 1.52706 1.25987 0.95591 1.03430 0.94309 0.85709 0.79505 0.78594 0.79164 1.19232 1.21158 1.17165 1.21463 0.91885 0.93254 1.50144 0.94282 1.19475 0.94087 0.94754 0.96806 1.21490 0.91764 0.98159 1.02421 1.21377 0.94600 0.82255 1.01634 1.45936 1.06763 1.09731 1.73578 1.21356 0.82708 0.92002 0.75590 1.90697 1.56175 1.46985 1.51041 1.21746 0.91480 0.84499 0.93913 1.86658 1.23924 1.65123 1.59323 1.21607 0.97994 0.98960 0.94599 1.20512 0.97115 0.97617 0.95588 1.20896 0.97294 0.95353 0.99563 1.21411 0.94992 1.00031 0.97750 1.21396 1.00712 0.97744 0.94165 1.20880 0.95427 0.96444 1.00840 1.20550 0.96463 0.97559 0.96219 1.20915 0.90485 0.98554 1.00228 0.92538 0.96211 0.96142 0.91296 0.91608 0.92419 0.91909 0.74869 0.75325 0.86939 0.89312 0.84368 0.83297 0.83394 0.84924 0.89205 0.88398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.80 13.96 21.45 0.30 -58.50 16 2 C 0.00 0.21 5.47 84.65 0.46 0.68 16 3 Si 0.95 43.89 27.47 68.60 1.88 45.77 16 4 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 5 H -0.29 -13.08 7.11 99.48 0.71 -12.38 16 6 H -0.25 -10.75 6.54 99.48 0.65 -10.09 16 7 C -0.53 -29.47 9.66 25.60 0.25 -29.22 16 8 H 0.04 2.36 7.99 -2.91 -0.02 2.34 16 9 C -0.01 -0.59 4.04 29.85 0.12 -0.47 16 10 C -0.10 -3.41 5.27 30.60 0.16 -3.25 16 11 C 0.12 3.71 5.67 86.38 0.49 4.20 16 12 N -0.71 -16.53 5.48 -463.06 -2.54 -19.07 16 13 C 0.50 12.92 6.74 87.66 0.59 13.52 16 14 O -0.57 -19.36 15.68 -3.01 -0.05 -19.41 16 15 C 0.13 2.65 1.34 -10.63 -0.01 2.63 16 16 O -0.54 -9.76 13.03 -148.98 -1.94 -11.70 16 17 C -0.09 -1.67 6.06 30.52 0.18 -1.48 16 18 C -0.11 -2.09 6.14 -19.60 -0.12 -2.21 16 19 C -0.11 -1.80 10.04 22.30 0.22 -1.57 16 20 C -0.12 -1.70 10.05 22.24 0.22 -1.47 16 21 C -0.12 -1.74 10.05 22.24 0.22 -1.51 16 22 C -0.12 -2.07 10.04 22.30 0.22 -1.84 16 23 C -0.11 -2.24 6.14 -19.59 -0.12 -2.36 16 24 C -0.06 -1.44 6.00 30.52 0.18 -1.26 16 25 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 26 H 0.02 0.87 7.20 -2.39 -0.02 0.86 16 27 H 0.02 0.88 7.57 -2.39 -0.02 0.86 16 28 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 29 H 0.07 2.19 8.14 -2.38 -0.02 2.17 16 30 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 31 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 32 H 0.41 6.82 6.90 -92.71 -0.64 6.18 16 33 H 0.40 3.86 7.55 -74.06 -0.56 3.30 16 34 H 0.11 1.43 8.11 -2.38 -0.02 1.41 16 35 H 0.09 1.69 7.89 -2.39 -0.02 1.67 16 36 H 0.14 1.60 8.06 -2.91 -0.02 1.58 16 37 H 0.15 1.20 8.06 -2.91 -0.02 1.18 16 38 H 0.15 1.29 8.06 -2.91 -0.02 1.26 16 39 H 0.13 1.88 8.06 -2.91 -0.02 1.85 16 40 H 0.09 1.94 8.11 -2.39 -0.02 1.92 16 41 H 0.10 2.45 6.90 -2.39 -0.02 2.43 16 Total: -1.00 -73.16 340.40 0.53 -72.63 By element: Atomic # 1 Polarization: 16.13 SS G_CDS: -0.21 Total: 15.92 kcal Atomic # 6 Polarization: -28.72 SS G_CDS: 3.08 Total: -25.64 kcal Atomic # 7 Polarization: -75.33 SS G_CDS: -2.24 Total: -77.57 kcal Atomic # 8 Polarization: -29.12 SS G_CDS: -1.99 Total: -31.11 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 1.88 Total: 45.77 kcal Total: -73.16 0.53 -72.63 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000365770643.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.490 kcal (2) G-P(sol) polarization free energy of solvation -73.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds