Wall clock time and date at job start Tue Mar 31 2020 06:54:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 119.99910 * 2 1 4 4 H 1.48502 * 109.47143 * 270.00053 * 3 2 1 5 5 H 1.48497 * 109.47133 * 30.00367 * 3 2 1 6 6 H 1.48498 * 109.47394 * 150.00291 * 3 2 1 7 7 C 1.37875 * 119.99870 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00015 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00075 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.47012 * 180.02562 * 9 7 2 11 11 N 1.46499 * 109.47021 * 180.02562 * 10 9 7 12 12 C 1.34775 * 119.99732 * 180.02562 * 11 10 9 13 13 O 1.21282 * 120.00296 * 0.02562 * 12 11 10 14 14 C 1.50707 * 119.99900 * 179.97438 * 12 11 10 15 15 O 1.42900 * 109.67611 * 34.48702 * 14 12 11 16 16 C 1.53326 * 109.67852 * 155.00008 * 14 12 11 17 17 C 1.52737 * 108.41399 * 189.61183 * 16 14 12 18 18 C 1.50647 * 110.57898 * 308.93878 * 17 16 14 19 19 C 1.38906 * 117.74072 * 197.39796 * 18 17 16 20 20 C 1.37924 * 120.54397 * 180.55891 * 19 18 17 21 21 C 1.38265 * 119.77272 * 359.97438 * 20 19 18 22 22 C 1.37924 * 119.77006 * 359.88507 * 21 20 19 23 23 C 1.37665 * 122.57107 * 17.73954 * 18 17 16 24 24 C 1.50630 * 122.56722 * 359.27904 * 23 18 17 25 25 H 0.97004 * 120.00132 * 359.97438 * 1 2 3 26 26 H 1.08998 * 109.46658 * 60.01069 * 9 7 2 27 27 H 1.08993 * 109.47707 * 300.00361 * 9 7 2 28 28 H 1.09006 * 109.46797 * 60.00769 * 10 9 7 29 29 H 1.08996 * 109.47502 * 300.01069 * 10 9 7 30 30 H 0.97000 * 120.00311 * 0.02562 * 11 10 9 31 31 H 0.96693 * 113.99902 * 300.51613 * 15 14 12 32 32 H 1.09002 * 109.68443 * 309.35712 * 16 14 12 33 33 H 1.08999 * 109.68122 * 69.87435 * 16 14 12 34 34 H 1.09005 * 109.25334 * 69.19067 * 17 16 14 35 35 H 1.08994 * 109.25313 * 188.62041 * 17 16 14 36 36 H 1.07997 * 119.72521 * 0.56153 * 19 18 17 37 37 H 1.08001 * 120.11187 * 180.02562 * 20 19 18 38 38 H 1.07999 * 120.11304 * 179.90265 * 21 20 19 39 39 H 1.08005 * 119.72776 * 180.02562 * 22 21 20 40 40 H 1.09002 * 109.25353 * 257.50390 * 24 23 18 41 41 H 1.09004 * 109.22158 * 138.06125 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 7 1.5128 -4.9308 -0.0012 12 6 2.1867 -6.0979 -0.0007 13 8 3.3995 -6.0980 0.0006 14 6 1.4332 -7.4031 -0.0008 15 8 0.2324 -7.2654 -0.7631 16 6 2.3084 -8.5046 -0.6105 17 6 1.4449 -9.7471 -0.8185 18 6 0.7064 -10.0967 0.4471 19 6 0.1777 -11.3767 0.5547 20 6 -0.5192 -11.7547 1.6833 21 6 -0.6931 -10.8530 2.7169 22 6 -0.1664 -9.5825 2.6132 23 6 0.5369 -9.2002 1.4780 24 6 1.0893 -7.7995 1.4335 25 1 -0.4850 0.8401 0.0004 26 1 0.6242 -2.5567 -0.8904 27 1 0.6246 -2.5571 0.8896 28 1 2.8718 -3.6043 0.8896 29 1 2.8721 -3.6043 -0.8904 30 1 0.5428 -4.9308 -0.0019 31 1 -0.3681 -6.5840 -0.4314 32 1 2.7063 -8.1693 -1.5683 33 1 3.1300 -8.7377 0.0669 34 1 0.7242 -9.5550 -1.6134 35 1 2.0820 -10.5834 -1.1062 36 1 0.3135 -12.0817 -0.2521 37 1 -0.9270 -12.7518 1.7597 38 1 -1.2392 -11.1426 3.6025 39 1 -0.3023 -8.8788 3.4213 40 1 1.9895 -7.7486 2.0462 41 1 0.3457 -7.1077 1.8292 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000367532945.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:52 Heat of formation + Delta-G solvation = -82.529527 kcal Electronic energy + Delta-G solvation = -22571.889060 eV Core-core repulsion = 19222.465829 eV Total energy + Delta-G solvation = -3349.423231 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.84129 -39.21983 -37.05805 -35.17483 -34.16427 -32.83469 -32.62114 -30.18531 -29.73905 -28.77528 -25.26300 -24.15403 -23.03108 -22.32291 -21.16016 -20.45421 -19.59502 -17.97562 -16.68434 -16.46857 -16.27086 -15.60143 -15.09881 -14.75586 -14.72276 -14.56857 -14.42347 -14.29594 -13.70194 -13.34302 -13.21714 -12.93455 -12.69416 -12.34329 -12.25215 -12.10389 -11.68441 -11.50934 -11.25975 -11.13930 -11.07216 -10.96235 -10.68610 -10.42651 -10.38153 -9.78301 -9.43562 -9.11112 -8.90162 -8.67949 -8.63074 -8.42432 -6.13263 -4.16370 1.21563 1.24354 2.75088 3.27106 3.32860 3.35480 3.42894 3.60213 4.08257 4.35317 4.39245 4.45700 4.75675 4.78394 4.81627 4.90283 4.95289 5.13468 5.23954 5.29037 5.35641 5.43840 5.54704 5.60458 5.71970 5.86405 5.89589 5.99756 6.15712 6.24758 6.27267 6.33645 6.36119 6.52423 6.65566 6.77650 6.86953 7.31235 7.45830 7.55366 7.83927 7.87981 8.21976 8.46701 8.89346 9.48814 10.98268 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.032788 B = 0.002991 C = 0.002871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.762606 B = 9359.989237 C = 9750.928695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.059 3.941 3 Si 0.897 3.103 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.523 4.523 8 H 0.059 0.941 9 C 0.013 3.987 10 C 0.121 3.879 11 N -0.716 5.716 12 C 0.487 3.513 13 O -0.540 6.540 14 C 0.124 3.876 15 O -0.541 6.541 16 C -0.089 4.089 17 C -0.076 4.076 18 C -0.063 4.063 19 C -0.123 4.123 20 C -0.123 4.123 21 C -0.126 4.126 22 C -0.118 4.118 23 C -0.068 4.068 24 C -0.102 4.102 25 H 0.262 0.738 26 H 0.023 0.977 27 H 0.022 0.978 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.394 0.606 31 H 0.377 0.623 32 H 0.080 0.920 33 H 0.086 0.914 34 H 0.087 0.913 35 H 0.076 0.924 36 H 0.120 0.880 37 H 0.119 0.881 38 H 0.120 0.880 39 H 0.121 0.879 40 H 0.093 0.907 41 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.570 -22.428 2.731 22.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.725 3.275 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.197 1.197 7 C -0.561 4.561 8 H 0.078 0.922 9 C -0.025 4.025 10 C -0.001 4.001 11 N -0.367 5.367 12 C 0.271 3.729 13 O -0.418 6.418 14 C 0.079 3.921 15 O -0.347 6.347 16 C -0.127 4.127 17 C -0.113 4.113 18 C -0.063 4.063 19 C -0.141 4.141 20 C -0.141 4.141 21 C -0.144 4.144 22 C -0.136 4.136 23 C -0.068 4.068 24 C -0.140 4.140 25 H 0.072 0.928 26 H 0.041 0.959 27 H 0.040 0.960 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.228 0.772 31 H 0.225 0.775 32 H 0.098 0.902 33 H 0.105 0.895 34 H 0.105 0.895 35 H 0.094 0.906 36 H 0.138 0.862 37 H 0.137 0.863 38 H 0.138 0.862 39 H 0.139 0.861 40 H 0.111 0.889 41 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -1.567 -22.754 2.387 22.932 hybrid contribution -0.448 1.489 0.441 1.616 sum -2.015 -21.265 2.828 21.547 Atomic orbital electron populations 1.69951 1.06088 1.26939 1.50268 1.24994 0.94904 0.99436 0.94919 0.86506 0.79828 0.82953 0.78242 1.20518 1.21137 1.19731 1.21036 0.93247 0.90357 1.51508 0.92250 1.19325 0.94170 0.91112 0.97856 1.21775 0.96108 0.81338 1.00919 1.46345 1.10394 1.06774 1.73164 1.21158 0.88710 0.86009 0.77036 1.90689 1.13646 1.87561 1.49882 1.21394 0.85780 0.93067 0.91809 1.86615 1.30608 1.61428 1.56035 1.21371 0.96513 0.92388 1.02429 1.20400 0.98281 0.97342 0.95247 1.19624 0.98075 0.93225 0.95360 1.21131 0.98866 0.95862 0.98199 1.21043 0.99462 0.99476 0.94115 1.21019 1.00515 0.93868 0.98987 1.21140 0.98260 0.96725 0.97479 1.19353 0.98584 0.94728 0.94129 1.21099 1.02403 0.94250 0.96242 0.92799 0.95865 0.95957 0.92414 0.92412 0.77213 0.77454 0.90165 0.89518 0.89452 0.90595 0.86226 0.86283 0.86217 0.86145 0.88898 0.89682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.79 13.29 55.43 0.74 -25.05 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.90 21.19 29.54 -169.99 -5.02 16.17 16 4 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 6 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 7 C -0.52 -14.32 9.11 -34.44 -0.31 -14.63 16 8 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 9 C 0.01 0.31 5.09 -27.88 -0.14 0.17 16 10 C 0.12 2.50 5.61 -4.04 -0.02 2.48 16 11 N -0.72 -11.92 5.47 -60.29 -0.33 -12.25 16 12 C 0.49 7.99 6.72 -10.98 -0.07 7.92 16 13 O -0.54 -10.80 16.28 5.56 0.09 -10.71 16 14 C 0.12 1.57 0.95 -91.74 -0.09 1.49 16 15 O -0.54 -6.46 11.75 -35.23 -0.41 -6.87 16 16 C -0.09 -1.09 4.51 -26.70 -0.12 -1.21 16 17 C -0.08 -0.78 5.28 -28.04 -0.15 -0.93 16 18 C -0.06 -0.68 5.68 -104.61 -0.59 -1.28 16 19 C -0.12 -1.18 9.61 -39.45 -0.38 -1.56 16 20 C -0.12 -1.10 10.05 -39.69 -0.40 -1.50 16 21 C -0.13 -1.15 10.05 -39.69 -0.40 -1.55 16 22 C -0.12 -1.19 9.61 -39.45 -0.38 -1.57 16 23 C -0.07 -0.75 5.62 -104.62 -0.59 -1.34 16 24 C -0.10 -1.15 4.64 -28.06 -0.13 -1.28 16 25 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 26 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 28 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 29 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 30 H 0.39 5.49 6.96 -40.82 -0.28 5.20 16 31 H 0.38 3.45 7.58 45.56 0.35 3.80 16 32 H 0.08 1.03 8.12 -51.93 -0.42 0.61 16 33 H 0.09 1.06 8.10 -51.93 -0.42 0.64 16 34 H 0.09 0.94 7.73 -51.93 -0.40 0.53 16 35 H 0.08 0.65 8.13 -51.93 -0.42 0.23 16 36 H 0.12 0.92 8.05 -52.49 -0.42 0.50 16 37 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 38 H 0.12 0.85 8.06 -52.49 -0.42 0.42 16 39 H 0.12 1.03 8.05 -52.48 -0.42 0.61 16 40 H 0.09 1.08 8.11 -51.93 -0.42 0.66 16 41 H 0.08 0.85 8.12 -51.93 -0.42 0.43 16 LS Contribution 339.32 15.07 5.11 5.11 Total: -1.00 -32.13 339.32 -9.07 -41.19 By element: Atomic # 1 Polarization: 11.02 SS G_CDS: -5.37 Total: 5.65 kcal Atomic # 6 Polarization: -9.38 SS G_CDS: -3.87 Total: -13.25 kcal Atomic # 7 Polarization: -37.71 SS G_CDS: 0.41 Total: -37.30 kcal Atomic # 8 Polarization: -17.26 SS G_CDS: -0.32 Total: -17.58 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -32.13 -9.07 -41.19 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000367532945.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.336 kcal (2) G-P(sol) polarization free energy of solvation -32.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds