Wall clock time and date at job start Tue Mar 31 2020 06:54:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 119.99910 * 2 1 4 4 H 1.48502 * 109.47143 * 270.00053 * 3 2 1 5 5 H 1.48497 * 109.47133 * 30.00367 * 3 2 1 6 6 H 1.48498 * 109.47394 * 150.00291 * 3 2 1 7 7 C 1.37875 * 119.99870 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00015 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00075 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.47012 * 180.02562 * 9 7 2 11 11 N 1.46499 * 109.47021 * 180.02562 * 10 9 7 12 12 C 1.34775 * 119.99732 * 180.02562 * 11 10 9 13 13 O 1.21282 * 120.00296 * 0.02562 * 12 11 10 14 14 C 1.50707 * 119.99900 * 179.97438 * 12 11 10 15 15 O 1.42900 * 109.67611 * 34.48702 * 14 12 11 16 16 C 1.53326 * 109.67852 * 155.00008 * 14 12 11 17 17 C 1.52737 * 108.41399 * 189.61183 * 16 14 12 18 18 C 1.50647 * 110.57898 * 308.93878 * 17 16 14 19 19 C 1.38906 * 117.74072 * 197.39796 * 18 17 16 20 20 C 1.37924 * 120.54397 * 180.55891 * 19 18 17 21 21 C 1.38265 * 119.77272 * 359.97438 * 20 19 18 22 22 C 1.37924 * 119.77006 * 359.88507 * 21 20 19 23 23 C 1.37665 * 122.57107 * 17.73954 * 18 17 16 24 24 C 1.50630 * 122.56722 * 359.27904 * 23 18 17 25 25 H 0.97004 * 120.00132 * 359.97438 * 1 2 3 26 26 H 1.08998 * 109.46658 * 60.01069 * 9 7 2 27 27 H 1.08993 * 109.47707 * 300.00361 * 9 7 2 28 28 H 1.09006 * 109.46797 * 60.00769 * 10 9 7 29 29 H 1.08996 * 109.47502 * 300.01069 * 10 9 7 30 30 H 0.97000 * 120.00311 * 0.02562 * 11 10 9 31 31 H 0.96693 * 113.99902 * 300.51613 * 15 14 12 32 32 H 1.09002 * 109.68443 * 309.35712 * 16 14 12 33 33 H 1.08999 * 109.68122 * 69.87435 * 16 14 12 34 34 H 1.09005 * 109.25334 * 69.19067 * 17 16 14 35 35 H 1.08994 * 109.25313 * 188.62041 * 17 16 14 36 36 H 1.07997 * 119.72521 * 0.56153 * 19 18 17 37 37 H 1.08001 * 120.11187 * 180.02562 * 20 19 18 38 38 H 1.07999 * 120.11304 * 179.90265 * 21 20 19 39 39 H 1.08005 * 119.72776 * 180.02562 * 22 21 20 40 40 H 1.09002 * 109.25353 * 257.50390 * 24 23 18 41 41 H 1.09004 * 109.22158 * 138.06125 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 7 1.5128 -4.9308 -0.0012 12 6 2.1867 -6.0979 -0.0007 13 8 3.3995 -6.0980 0.0006 14 6 1.4332 -7.4031 -0.0008 15 8 0.2324 -7.2654 -0.7631 16 6 2.3084 -8.5046 -0.6105 17 6 1.4449 -9.7471 -0.8185 18 6 0.7064 -10.0967 0.4471 19 6 0.1777 -11.3767 0.5547 20 6 -0.5192 -11.7547 1.6833 21 6 -0.6931 -10.8530 2.7169 22 6 -0.1664 -9.5825 2.6132 23 6 0.5369 -9.2002 1.4780 24 6 1.0893 -7.7995 1.4335 25 1 -0.4850 0.8401 0.0004 26 1 0.6242 -2.5567 -0.8904 27 1 0.6246 -2.5571 0.8896 28 1 2.8718 -3.6043 0.8896 29 1 2.8721 -3.6043 -0.8904 30 1 0.5428 -4.9308 -0.0019 31 1 -0.3681 -6.5840 -0.4314 32 1 2.7063 -8.1693 -1.5683 33 1 3.1300 -8.7377 0.0669 34 1 0.7242 -9.5550 -1.6134 35 1 2.0820 -10.5834 -1.1062 36 1 0.3135 -12.0817 -0.2521 37 1 -0.9270 -12.7518 1.7597 38 1 -1.2392 -11.1426 3.6025 39 1 -0.3023 -8.8788 3.4213 40 1 1.9895 -7.7486 2.0462 41 1 0.3457 -7.1077 1.8292 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000367532945.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:51 Heat of formation + Delta-G solvation = -103.604436 kcal Electronic energy + Delta-G solvation = -22572.802937 eV Core-core repulsion = 19222.465829 eV Total energy + Delta-G solvation = -3350.337108 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.88790 -40.27303 -38.12597 -36.77109 -35.24458 -34.67421 -33.42153 -31.67587 -30.87843 -29.70428 -27.00684 -25.24402 -24.09996 -23.07248 -22.89209 -21.67199 -20.55909 -19.22244 -18.53777 -17.44741 -17.24666 -16.93349 -16.51911 -16.24213 -15.86372 -15.72662 -15.34802 -15.28527 -14.97724 -14.77745 -14.31615 -14.00841 -13.88198 -13.70330 -13.24999 -13.12708 -12.97692 -12.95268 -12.67199 -12.55446 -12.31050 -12.26565 -12.01045 -11.77658 -11.69559 -11.46306 -11.30281 -10.61980 -10.51113 -10.11616 -9.62274 -9.42233 -8.25543 -6.35899 0.48655 0.52180 1.41239 1.41352 1.42501 1.52747 2.05507 2.41504 2.87592 3.09448 3.10706 3.35717 3.52913 3.74539 3.97805 4.04054 4.05959 4.23893 4.36288 4.44266 4.45342 4.48853 4.51630 4.59909 4.76729 4.81591 4.82775 4.91383 4.99426 5.15141 5.18746 5.20367 5.32120 5.44456 5.55898 5.62008 5.66932 5.76097 5.76987 6.13939 6.16924 6.32754 6.63357 6.76997 7.10277 7.33543 8.86111 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.032788 B = 0.002991 C = 0.002871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.762606 B = 9359.989237 C = 9750.928695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.009 3.991 3 Si 0.963 3.037 4 H -0.273 1.273 5 H -0.279 1.279 6 H -0.267 1.267 7 C -0.548 4.548 8 H 0.058 0.942 9 C 0.024 3.976 10 C 0.139 3.861 11 N -0.710 5.710 12 C 0.487 3.513 13 O -0.577 6.577 14 C 0.137 3.863 15 O -0.543 6.543 16 C -0.092 4.092 17 C -0.068 4.068 18 C -0.080 4.080 19 C -0.129 4.129 20 C -0.125 4.125 21 C -0.131 4.131 22 C -0.129 4.129 23 C -0.084 4.084 24 C -0.097 4.097 25 H 0.266 0.734 26 H 0.009 0.991 27 H 0.012 0.988 28 H 0.049 0.951 29 H 0.045 0.955 30 H 0.408 0.592 31 H 0.389 0.611 32 H 0.069 0.931 33 H 0.082 0.918 34 H 0.084 0.916 35 H 0.094 0.906 36 H 0.138 0.862 37 H 0.143 0.857 38 H 0.141 0.859 39 H 0.131 0.869 40 H 0.085 0.915 41 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.104 -23.577 3.112 23.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.190 4.190 3 Si 0.788 3.212 4 H -0.198 1.198 5 H -0.205 1.205 6 H -0.191 1.191 7 C -0.586 4.586 8 H 0.076 0.924 9 C -0.014 4.014 10 C 0.016 3.984 11 N -0.361 5.361 12 C 0.273 3.727 13 O -0.457 6.457 14 C 0.093 3.907 15 O -0.351 6.351 16 C -0.130 4.130 17 C -0.104 4.104 18 C -0.080 4.080 19 C -0.147 4.147 20 C -0.143 4.143 21 C -0.148 4.148 22 C -0.147 4.147 23 C -0.084 4.084 24 C -0.135 4.135 25 H 0.075 0.925 26 H 0.027 0.973 27 H 0.030 0.970 28 H 0.067 0.933 29 H 0.063 0.937 30 H 0.245 0.755 31 H 0.240 0.760 32 H 0.087 0.913 33 H 0.101 0.899 34 H 0.102 0.898 35 H 0.113 0.887 36 H 0.156 0.844 37 H 0.161 0.839 38 H 0.159 0.841 39 H 0.148 0.852 40 H 0.104 0.896 41 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -2.133 -23.917 2.768 24.171 hybrid contribution -0.317 1.793 0.329 1.851 sum -2.450 -22.123 3.098 22.473 Atomic orbital electron populations 1.70048 1.07468 1.28022 1.50911 1.25844 0.95792 1.03013 0.94398 0.85469 0.78653 0.78578 0.78505 1.19836 1.20461 1.19111 1.21459 0.93562 0.91980 1.51647 0.92407 1.19128 0.94173 0.91599 0.96490 1.21269 0.95128 0.82124 0.99894 1.46139 1.11069 1.05705 1.73227 1.21902 0.88456 0.86866 0.75491 1.90667 1.15484 1.88147 1.51386 1.21235 0.85679 0.90658 0.93153 1.86610 1.30312 1.61949 1.56183 1.21395 0.96754 0.93185 1.01652 1.20346 0.98068 0.96855 0.95177 1.19769 0.98767 0.93975 0.95449 1.21391 0.98586 0.95638 0.99094 1.21394 0.98775 1.00538 0.93617 1.21343 1.00160 0.93479 0.99856 1.21338 0.98266 0.97597 0.97480 1.19394 0.99584 0.94448 0.95019 1.21041 1.02488 0.95201 0.94746 0.92508 0.97267 0.97014 0.93255 0.93673 0.75514 0.76046 0.91261 0.89934 0.89805 0.88749 0.84433 0.83911 0.84141 0.85153 0.89644 0.88542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.57 13.29 21.45 0.28 -53.29 16 2 C 0.01 0.47 5.46 84.65 0.46 0.94 16 3 Si 0.96 43.28 29.54 68.60 2.03 45.30 16 4 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 5 H -0.28 -12.18 7.11 99.48 0.71 -11.48 16 6 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 7 C -0.55 -30.30 9.11 25.60 0.23 -30.07 16 8 H 0.06 3.14 7.74 -2.91 -0.02 3.11 16 9 C 0.02 1.16 5.09 29.85 0.15 1.31 16 10 C 0.14 5.88 5.61 86.38 0.48 6.37 16 11 N -0.71 -23.69 5.47 -463.05 -2.53 -26.22 16 12 C 0.49 16.05 6.72 87.66 0.59 16.64 16 13 O -0.58 -23.47 16.28 -3.03 -0.05 -23.52 16 14 C 0.14 3.43 0.95 -11.52 -0.01 3.42 16 15 O -0.54 -12.42 11.75 -148.98 -1.75 -14.17 16 16 C -0.09 -2.22 4.51 30.62 0.14 -2.08 16 17 C -0.07 -1.32 5.28 29.74 0.16 -1.16 16 18 C -0.08 -1.61 5.68 -19.86 -0.11 -1.72 16 19 C -0.13 -2.19 9.61 22.36 0.21 -1.97 16 20 C -0.13 -1.91 10.05 22.20 0.22 -1.69 16 21 C -0.13 -2.08 10.05 22.20 0.22 -1.86 16 22 C -0.13 -2.38 9.61 22.36 0.21 -2.16 16 23 C -0.08 -1.77 5.62 -19.86 -0.11 -1.88 16 24 C -0.10 -2.12 4.64 29.74 0.14 -1.98 16 25 H 0.27 14.49 8.31 -92.71 -0.77 13.72 16 26 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 27 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 28 H 0.05 2.16 8.14 -2.38 -0.02 2.14 16 29 H 0.04 2.01 8.14 -2.39 -0.02 1.99 16 30 H 0.41 11.23 6.96 -92.71 -0.65 10.58 16 31 H 0.39 6.64 7.58 -74.06 -0.56 6.08 16 32 H 0.07 1.80 8.12 -2.39 -0.02 1.78 16 33 H 0.08 2.03 8.10 -2.39 -0.02 2.02 16 34 H 0.08 1.69 7.73 -2.38 -0.02 1.67 16 35 H 0.09 1.46 8.13 -2.39 -0.02 1.44 16 36 H 0.14 1.74 8.05 -2.91 -0.02 1.72 16 37 H 0.14 1.43 8.06 -2.91 -0.02 1.41 16 38 H 0.14 1.57 8.06 -2.91 -0.02 1.55 16 39 H 0.13 2.03 8.05 -2.91 -0.02 2.01 16 40 H 0.09 1.98 8.11 -2.39 -0.02 1.96 16 41 H 0.10 1.83 8.12 -2.38 -0.02 1.81 16 Total: -1.00 -68.23 339.32 0.81 -67.42 By element: Atomic # 1 Polarization: 22.54 SS G_CDS: -0.17 Total: 22.38 kcal Atomic # 6 Polarization: -20.90 SS G_CDS: 2.99 Total: -17.90 kcal Atomic # 7 Polarization: -77.26 SS G_CDS: -2.25 Total: -79.51 kcal Atomic # 8 Polarization: -35.89 SS G_CDS: -1.80 Total: -37.69 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.30 kcal Total: -68.23 0.81 -67.42 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000367532945.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.180 kcal (2) G-P(sol) polarization free energy of solvation -68.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds