Wall clock time and date at job start Tue Mar 31 2020 06:27:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 119.99661 * 2 1 4 4 H 1.48499 * 109.47145 * 269.99301 * 3 2 1 5 5 H 1.48496 * 109.47547 * 29.99797 * 3 2 1 6 6 H 1.48499 * 109.47030 * 149.99701 * 3 2 1 7 7 C 1.37870 * 120.00200 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00310 * 359.97438 * 7 2 1 9 9 C 1.50706 * 120.00176 * 180.02562 * 7 2 1 10 10 N 1.46893 * 109.47176 * 180.02562 * 9 7 2 11 11 C 1.46903 * 110.99924 * 179.97438 * 10 9 7 12 12 C 1.50701 * 109.47245 * 179.97438 * 11 10 9 13 13 C 1.39873 * 126.04180 * 90.01853 * 12 11 10 14 14 N 1.30835 * 108.20227 * 179.97438 * 13 12 11 15 15 N 1.40079 * 108.20831 * 0.02562 * 14 13 12 16 16 C 1.46495 * 126.04001 * 179.97438 * 15 14 13 17 17 C 1.50700 * 109.47136 * 304.97958 * 16 15 14 18 18 C 1.38240 * 119.97597 * 269.72248 * 17 16 15 19 19 C 1.38200 * 120.02672 * 179.72726 * 18 17 16 20 20 C 1.38459 * 119.97417 * 0.56492 * 19 18 17 21 21 F 1.35098 * 120.02529 * 179.68436 * 20 19 18 22 22 C 1.38457 * 119.94589 * 359.71230 * 20 19 18 23 23 C 1.38198 * 119.97485 * 359.97438 * 22 20 19 24 24 C 1.34953 * 107.92753 * 359.75682 * 15 14 13 25 25 H 0.96999 * 120.00061 * 0.02562 * 1 2 3 26 26 H 1.09001 * 109.46953 * 299.99770 * 9 7 2 27 27 H 1.09000 * 109.47318 * 59.99368 * 9 7 2 28 28 H 1.00893 * 111.00654 * 56.04333 * 10 9 7 29 29 H 1.08993 * 109.46933 * 299.99334 * 11 10 9 30 30 H 1.09003 * 109.46864 * 60.00013 * 11 10 9 31 31 H 1.07999 * 125.89451 * 359.96791 * 13 12 11 32 32 H 1.08999 * 109.47070 * 64.97845 * 16 15 14 33 33 H 1.08996 * 109.47692 * 184.97630 * 16 15 14 34 34 H 1.08001 * 119.98623 * 359.97438 * 18 17 16 35 35 H 1.08005 * 120.01245 * 180.25701 * 19 18 17 36 36 H 1.08004 * 120.01274 * 179.97438 * 22 20 19 37 37 H 1.08005 * 119.98475 * 180.02562 * 23 22 20 38 38 H 1.07988 * 126.13153 * 180.23565 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6528 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1940 0.0011 10 7 4.0013 -2.5789 0.0010 11 6 5.4698 -2.6180 0.0009 12 6 5.9341 -4.0517 0.0015 13 6 6.1879 -4.8350 -1.1293 14 7 6.5721 -6.0195 -0.7280 15 7 6.5743 -6.0278 0.6727 16 6 6.9407 -7.1598 1.5274 17 6 6.1055 -8.3587 1.1586 18 6 4.8956 -8.5784 1.7902 19 6 4.1262 -9.6744 1.4488 20 6 4.5729 -10.5591 0.4819 21 9 3.8246 -11.6344 0.1519 22 6 5.7875 -10.3412 -0.1460 23 6 6.5522 -9.2409 0.1925 24 6 6.1839 -4.8073 1.0960 25 1 -0.4850 0.8400 -0.0004 26 1 3.8752 -0.6803 -0.8889 27 1 3.8746 -0.6798 0.8911 28 1 3.6261 -3.0951 -0.7805 29 1 5.8466 -2.1141 -0.8890 30 1 5.8467 -2.1141 0.8910 31 1 6.0846 -4.5168 -2.1561 32 1 7.9957 -7.3948 1.3867 33 1 6.7625 -6.9000 2.5708 34 1 4.5497 -7.8910 2.5481 35 1 3.1790 -9.8436 1.9395 36 1 6.1373 -11.0308 -0.9000 37 1 7.4995 -9.0705 -0.2975 38 1 6.0862 -4.4909 2.1238 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000425979829.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:38 Heat of formation + Delta-G solvation = 61.505868 kcal Electronic energy + Delta-G solvation = -21161.674057 eV Core-core repulsion = 17727.329115 eV Total energy + Delta-G solvation = -3434.344941 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.129 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.16736 -41.12368 -39.34359 -35.59216 -34.01597 -32.42567 -31.47119 -30.66344 -30.30197 -27.50867 -26.11241 -23.73324 -23.36081 -22.25811 -21.05270 -20.68589 -19.94616 -17.97157 -17.08130 -16.73169 -16.52139 -16.16199 -15.83395 -14.94642 -14.93838 -14.50444 -14.13572 -13.99600 -13.89403 -13.71360 -13.45523 -13.10216 -12.79274 -12.51297 -12.39213 -12.25976 -12.05974 -11.62312 -11.50774 -11.32029 -10.77032 -10.50576 -10.21529 -9.80326 -9.41797 -9.30723 -9.25861 -8.99398 -8.58057 -8.24923 -7.38586 -6.03536 -4.01297 0.69635 0.93191 2.01457 2.54836 2.98387 3.30087 3.34765 3.37503 3.40138 3.94896 4.15680 4.32239 4.43958 4.57075 4.58781 4.86618 4.96561 5.00943 5.11427 5.20907 5.28855 5.38656 5.56437 5.60568 5.66153 5.72557 5.80276 5.88554 5.95856 6.12093 6.17569 6.44686 6.54303 6.77481 6.83404 7.05406 7.09822 7.64749 7.81968 7.95465 8.40458 8.69176 9.05178 9.58558 11.09889 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.020706 B = 0.002924 C = 0.002680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1351.934668 B = 9574.526361 C =10444.863434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.067 3.933 3 Si 0.879 3.121 4 H -0.278 1.278 5 H -0.286 1.286 6 H -0.266 1.266 7 C -0.515 4.515 8 H 0.078 0.922 9 C 0.163 3.837 10 N -0.677 5.677 11 C 0.131 3.869 12 C -0.219 4.219 13 C 0.053 3.947 14 N -0.297 5.297 15 N -0.377 5.377 16 C 0.180 3.820 17 C -0.119 4.119 18 C -0.067 4.067 19 C -0.156 4.156 20 C 0.106 3.894 21 F -0.140 7.140 22 C -0.159 4.159 23 C -0.055 4.055 24 C 0.068 3.932 25 H 0.263 0.737 26 H -0.021 1.021 27 H 0.026 0.974 28 H 0.336 0.664 29 H 0.026 0.974 30 H 0.068 0.932 31 H 0.178 0.822 32 H 0.091 0.909 33 H 0.105 0.895 34 H 0.135 0.865 35 H 0.138 0.862 36 H 0.136 0.864 37 H 0.134 0.866 38 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.831 -18.858 3.605 25.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.134 4.134 3 Si 0.706 3.294 4 H -0.204 1.204 5 H -0.212 1.212 6 H -0.191 1.191 7 C -0.553 4.553 8 H 0.096 0.904 9 C 0.035 3.965 10 N -0.308 5.308 11 C 0.000 4.000 12 C -0.230 4.230 13 C -0.134 4.134 14 N -0.117 5.117 15 N -0.160 5.160 16 C 0.059 3.941 17 C -0.120 4.120 18 C -0.086 4.086 19 C -0.175 4.175 20 C 0.087 3.913 21 F -0.118 7.118 22 C -0.177 4.177 23 C -0.074 4.074 24 C -0.077 4.077 25 H 0.073 0.927 26 H -0.003 1.003 27 H 0.044 0.956 28 H 0.153 0.847 29 H 0.044 0.956 30 H 0.086 0.914 31 H 0.195 0.805 32 H 0.109 0.891 33 H 0.123 0.877 34 H 0.152 0.848 35 H 0.156 0.844 36 H 0.154 0.846 37 H 0.152 0.848 38 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 17.017 -20.103 4.030 26.645 hybrid contribution -0.031 1.830 -0.757 1.981 sum 16.986 -18.273 3.273 25.162 Atomic orbital electron populations 1.69904 1.06186 1.26840 1.51142 1.24918 0.94750 0.98971 0.94796 0.86806 0.80319 0.83813 0.78443 1.20361 1.21236 1.19114 1.21080 0.89048 0.94760 1.50394 0.90375 1.20014 0.96562 0.85184 0.94701 1.60548 1.04262 1.16301 1.49644 1.20163 0.90219 0.89630 0.99961 1.20144 1.12217 0.99012 0.91652 1.23799 0.98868 0.90885 0.99870 1.77259 1.24678 1.21168 0.88634 1.48501 1.53353 1.09443 1.04717 1.20449 0.98549 0.82000 0.93060 1.19885 0.96526 0.96684 0.98907 1.20961 0.92818 0.96043 0.98780 1.21154 1.01737 0.95609 0.99000 1.17794 0.90739 0.85564 0.97251 1.91508 1.75730 1.53041 1.91554 1.21140 0.94262 1.00213 1.02120 1.20886 0.99614 0.92171 0.94684 1.22312 0.99878 0.85295 1.00240 0.92688 1.00328 0.95615 0.84727 0.95573 0.91379 0.80483 0.89090 0.87673 0.84752 0.84436 0.84603 0.84795 0.81053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.91 13.96 55.43 0.77 -27.13 16 2 C 0.07 1.96 5.47 -17.82 -0.10 1.87 16 3 Si 0.88 21.60 27.47 -169.99 -4.67 16.93 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.27 -6.28 6.54 56.52 0.37 -5.91 16 7 C -0.51 -14.84 9.87 -34.44 -0.34 -15.18 16 8 H 0.08 2.46 8.06 -52.49 -0.42 2.03 16 9 C 0.16 3.96 4.51 -4.98 -0.02 3.94 16 10 N -0.68 -14.06 6.48 -116.34 -0.75 -14.81 16 11 C 0.13 2.17 6.17 -4.97 -0.03 2.14 16 12 C -0.22 -3.21 5.61 -105.05 -0.59 -3.80 16 13 C 0.05 0.74 11.96 -17.36 -0.21 0.54 16 14 N -0.30 -4.18 12.41 30.62 0.38 -3.80 16 15 N -0.38 -4.49 3.67 -62.55 -0.23 -4.72 16 16 C 0.18 1.45 6.63 -5.20 -0.03 1.42 16 17 C -0.12 -1.08 5.31 -104.62 -0.56 -1.64 16 18 C -0.07 -0.62 9.70 -39.59 -0.38 -1.01 16 19 C -0.16 -1.52 10.03 -39.51 -0.40 -1.91 16 20 C 0.11 1.10 7.30 -39.42 -0.29 0.81 16 21 F -0.14 -1.56 17.27 2.25 0.04 -1.52 16 22 C -0.16 -1.47 10.03 -39.52 -0.40 -1.86 16 23 C -0.05 -0.49 9.70 -39.59 -0.38 -0.88 16 24 C 0.07 0.87 11.36 -17.22 -0.20 0.67 16 25 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 26 H -0.02 -0.50 7.57 -51.93 -0.39 -0.89 16 27 H 0.03 0.64 7.20 -51.93 -0.37 0.26 16 28 H 0.34 6.96 8.71 -39.30 -0.34 6.61 16 29 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.18 2.15 8.06 -52.49 -0.42 1.73 16 32 H 0.09 0.59 8.08 -51.93 -0.42 0.17 16 33 H 0.11 0.57 8.01 -51.93 -0.42 0.16 16 34 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 35 H 0.14 1.14 8.06 -52.48 -0.42 0.71 16 36 H 0.14 1.01 8.06 -52.48 -0.42 0.59 16 37 H 0.13 1.02 8.06 -52.48 -0.42 0.60 16 38 H 0.17 1.75 8.06 -52.49 -0.42 1.33 16 LS Contribution 336.23 15.07 5.07 5.07 Total: -1.00 -33.57 336.23 -8.23 -41.81 By element: Atomic # 1 Polarization: 7.99 SS G_CDS: -4.92 Total: 3.07 kcal Atomic # 6 Polarization: -10.97 SS G_CDS: -3.92 Total: -14.90 kcal Atomic # 7 Polarization: -50.63 SS G_CDS: 0.17 Total: -50.46 kcal Atomic # 9 Polarization: -1.56 SS G_CDS: 0.04 Total: -1.52 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -4.67 Total: 16.93 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -33.57 -8.23 -41.81 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000425979829.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.313 kcal (2) G-P(sol) polarization free energy of solvation -33.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.807 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds