Wall clock time and date at job start Tue Mar 31 2020 06:27:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 119.99661 * 2 1 4 4 H 1.48499 * 109.47145 * 269.99301 * 3 2 1 5 5 H 1.48496 * 109.47547 * 29.99797 * 3 2 1 6 6 H 1.48499 * 109.47030 * 149.99701 * 3 2 1 7 7 C 1.37870 * 120.00200 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00310 * 359.97438 * 7 2 1 9 9 C 1.50706 * 120.00176 * 180.02562 * 7 2 1 10 10 N 1.46893 * 109.47176 * 180.02562 * 9 7 2 11 11 C 1.46903 * 110.99924 * 179.97438 * 10 9 7 12 12 C 1.50701 * 109.47245 * 179.97438 * 11 10 9 13 13 C 1.39873 * 126.04180 * 90.01853 * 12 11 10 14 14 N 1.30835 * 108.20227 * 179.97438 * 13 12 11 15 15 N 1.40079 * 108.20831 * 0.02562 * 14 13 12 16 16 C 1.46495 * 126.04001 * 179.97438 * 15 14 13 17 17 C 1.50700 * 109.47136 * 304.97958 * 16 15 14 18 18 C 1.38240 * 119.97597 * 269.72248 * 17 16 15 19 19 C 1.38200 * 120.02672 * 179.72726 * 18 17 16 20 20 C 1.38459 * 119.97417 * 0.56492 * 19 18 17 21 21 F 1.35098 * 120.02529 * 179.68436 * 20 19 18 22 22 C 1.38457 * 119.94589 * 359.71230 * 20 19 18 23 23 C 1.38198 * 119.97485 * 359.97438 * 22 20 19 24 24 C 1.34953 * 107.92753 * 359.75682 * 15 14 13 25 25 H 0.96999 * 120.00061 * 0.02562 * 1 2 3 26 26 H 1.09001 * 109.46953 * 299.99770 * 9 7 2 27 27 H 1.09000 * 109.47318 * 59.99368 * 9 7 2 28 28 H 1.00893 * 111.00654 * 56.04333 * 10 9 7 29 29 H 1.08993 * 109.46933 * 299.99334 * 11 10 9 30 30 H 1.09003 * 109.46864 * 60.00013 * 11 10 9 31 31 H 1.07999 * 125.89451 * 359.96791 * 13 12 11 32 32 H 1.08999 * 109.47070 * 64.97845 * 16 15 14 33 33 H 1.08996 * 109.47692 * 184.97630 * 16 15 14 34 34 H 1.08001 * 119.98623 * 359.97438 * 18 17 16 35 35 H 1.08005 * 120.01245 * 180.25701 * 19 18 17 36 36 H 1.08004 * 120.01274 * 179.97438 * 22 20 19 37 37 H 1.08005 * 119.98475 * 180.02562 * 23 22 20 38 38 H 1.07988 * 126.13153 * 180.23565 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6528 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1940 0.0011 10 7 4.0013 -2.5789 0.0010 11 6 5.4698 -2.6180 0.0009 12 6 5.9341 -4.0517 0.0015 13 6 6.1879 -4.8350 -1.1293 14 7 6.5721 -6.0195 -0.7280 15 7 6.5743 -6.0278 0.6727 16 6 6.9407 -7.1598 1.5274 17 6 6.1055 -8.3587 1.1586 18 6 4.8956 -8.5784 1.7902 19 6 4.1262 -9.6744 1.4488 20 6 4.5729 -10.5591 0.4819 21 9 3.8246 -11.6344 0.1519 22 6 5.7875 -10.3412 -0.1460 23 6 6.5522 -9.2409 0.1925 24 6 6.1839 -4.8073 1.0960 25 1 -0.4850 0.8400 -0.0004 26 1 3.8752 -0.6803 -0.8889 27 1 3.8746 -0.6798 0.8911 28 1 3.6261 -3.0951 -0.7805 29 1 5.8466 -2.1141 -0.8890 30 1 5.8467 -2.1141 0.8910 31 1 6.0846 -4.5168 -2.1561 32 1 7.9957 -7.3948 1.3867 33 1 6.7625 -6.9000 2.5708 34 1 4.5497 -7.8910 2.5481 35 1 3.1790 -9.8436 1.9395 36 1 6.1373 -11.0308 -0.9000 37 1 7.4995 -9.0705 -0.2975 38 1 6.0862 -4.4909 2.1238 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000425979829.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:37 Heat of formation + Delta-G solvation = 39.868306 kcal Electronic energy + Delta-G solvation = -21162.612332 eV Core-core repulsion = 17727.329115 eV Total energy + Delta-G solvation = -3435.283217 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.129 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -49.98168 -42.08748 -40.05956 -37.15590 -35.03300 -34.37793 -32.16827 -31.69401 -31.51362 -29.07199 -27.14441 -25.09506 -24.09210 -23.06824 -22.96334 -21.58455 -20.99306 -18.96857 -18.71838 -17.76775 -17.44250 -16.89904 -16.69155 -16.62514 -16.06019 -15.76555 -15.29624 -15.27508 -14.74509 -14.61689 -14.50980 -14.33902 -14.33143 -13.90738 -13.40572 -13.21326 -13.09400 -12.96614 -12.72645 -12.57717 -12.24206 -11.99552 -11.77178 -11.45186 -11.34530 -10.78798 -10.26744 -10.11316 -9.74647 -9.34335 -8.97583 -8.26979 -6.31549 -0.04433 0.23099 1.04554 1.38379 1.40385 1.52045 1.72966 1.90126 2.37616 2.62463 3.07391 3.21823 3.46746 3.67490 3.82585 3.87199 3.91740 4.09277 4.18821 4.24212 4.44196 4.51374 4.53436 4.58372 4.83842 4.87375 4.89081 4.91964 4.95856 5.09811 5.16301 5.18822 5.34640 5.42940 5.57525 5.75429 5.83874 6.01481 6.20800 6.62808 6.71781 6.80786 6.83351 7.33786 8.90023 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.020706 B = 0.002924 C = 0.002680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1351.934668 B = 9574.526361 C =10444.863434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.005 3.995 3 Si 0.955 3.045 4 H -0.267 1.267 5 H -0.282 1.282 6 H -0.245 1.245 7 C -0.527 4.527 8 H 0.033 0.967 9 C 0.174 3.826 10 N -0.685 5.685 11 C 0.137 3.863 12 C -0.246 4.246 13 C 0.042 3.958 14 N -0.316 5.316 15 N -0.370 5.370 16 C 0.172 3.828 17 C -0.123 4.123 18 C -0.074 4.074 19 C -0.167 4.167 20 C 0.084 3.916 21 F -0.150 7.150 22 C -0.163 4.163 23 C -0.059 4.059 24 C 0.078 3.922 25 H 0.267 0.733 26 H -0.014 1.014 27 H 0.030 0.970 28 H 0.332 0.668 29 H 0.031 0.969 30 H 0.076 0.924 31 H 0.187 0.813 32 H 0.111 0.889 33 H 0.137 0.863 34 H 0.149 0.851 35 H 0.145 0.855 36 H 0.150 0.850 37 H 0.148 0.852 38 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.298 -18.135 4.450 26.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.192 4.192 3 Si 0.778 3.222 4 H -0.193 1.193 5 H -0.208 1.208 6 H -0.168 1.168 7 C -0.566 4.566 8 H 0.051 0.949 9 C 0.045 3.955 10 N -0.316 5.316 11 C 0.008 3.992 12 C -0.257 4.257 13 C -0.144 4.144 14 N -0.138 5.138 15 N -0.152 5.152 16 C 0.053 3.947 17 C -0.124 4.124 18 C -0.093 4.093 19 C -0.186 4.186 20 C 0.065 3.935 21 F -0.128 7.128 22 C -0.182 4.182 23 C -0.078 4.078 24 C -0.069 4.069 25 H 0.076 0.924 26 H 0.003 0.997 27 H 0.048 0.952 28 H 0.149 0.851 29 H 0.050 0.950 30 H 0.094 0.906 31 H 0.203 0.797 32 H 0.129 0.871 33 H 0.155 0.845 34 H 0.167 0.833 35 H 0.163 0.837 36 H 0.167 0.833 37 H 0.165 0.835 38 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges 19.517 -19.423 4.875 27.963 hybrid contribution -0.819 1.444 -0.988 1.932 sum 18.698 -17.979 3.887 26.229 Atomic orbital electron populations 1.70068 1.08317 1.28209 1.52548 1.25934 0.95655 1.03499 0.94152 0.85606 0.79470 0.78024 0.79143 1.19262 1.20814 1.16848 1.21376 0.91685 0.93239 1.50269 0.94897 1.19764 0.93383 0.87408 0.94896 1.60482 1.07259 1.14139 1.49681 1.20125 0.87212 0.91375 1.00533 1.20037 1.14470 0.98497 0.92733 1.24011 0.98960 0.90980 1.00474 1.77215 1.25286 1.21157 0.90112 1.48785 1.52051 1.10086 1.04274 1.20877 0.99430 0.80417 0.93978 1.20070 0.96572 0.97033 0.98711 1.21200 0.92881 0.96041 0.99156 1.21362 1.02335 0.95823 0.99041 1.18066 0.91413 0.85819 0.98210 1.91478 1.76058 1.53550 1.91743 1.21362 0.93901 1.00673 1.02237 1.21116 1.00081 0.91952 0.94643 1.22707 0.98052 0.85194 1.00962 0.92420 0.99672 0.95243 0.85145 0.95037 0.90572 0.79654 0.87052 0.84519 0.83299 0.83670 0.83251 0.83476 0.78443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.03 13.96 21.44 0.30 -59.73 16 2 C 0.00 0.27 5.47 84.65 0.46 0.74 16 3 Si 0.95 43.89 27.47 68.60 1.88 45.77 16 4 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 5 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 6 H -0.25 -10.35 6.54 99.48 0.65 -9.70 16 7 C -0.53 -30.90 9.87 25.60 0.25 -30.65 16 8 H 0.03 2.16 8.06 -2.91 -0.02 2.13 16 9 C 0.17 8.26 4.51 85.56 0.39 8.65 16 10 N -0.69 -27.91 6.48 -521.98 -3.38 -31.29 16 11 C 0.14 4.29 6.17 85.56 0.53 4.82 16 12 C -0.25 -6.75 5.61 -20.14 -0.11 -6.87 16 13 C 0.04 1.13 11.96 85.24 1.02 2.15 16 14 N -0.32 -8.36 12.41 -57.02 -0.71 -9.07 16 15 N -0.37 -7.78 3.67 -351.81 -1.29 -9.07 16 16 C 0.17 2.20 6.63 85.63 0.57 2.77 16 17 C -0.12 -1.97 5.31 -19.86 -0.11 -2.08 16 18 C -0.07 -1.25 9.70 22.26 0.22 -1.04 16 19 C -0.17 -3.15 10.03 22.31 0.22 -2.93 16 20 C 0.08 1.73 7.30 22.37 0.16 1.90 16 21 F -0.15 -3.39 17.27 44.97 0.78 -2.61 16 22 C -0.16 -2.89 10.03 22.31 0.22 -2.66 16 23 C -0.06 -0.97 9.70 22.26 0.22 -0.75 16 24 C 0.08 1.75 11.36 83.54 0.95 2.70 16 25 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 26 H -0.01 -0.66 7.57 -2.39 -0.02 -0.68 16 27 H 0.03 1.38 7.20 -2.39 -0.02 1.37 16 28 H 0.33 13.81 8.71 -89.70 -0.78 13.03 16 29 H 0.03 0.95 8.14 -2.39 -0.02 0.94 16 30 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 31 H 0.19 4.39 8.06 -2.91 -0.02 4.36 16 32 H 0.11 1.03 8.08 -2.39 -0.02 1.01 16 33 H 0.14 0.90 8.01 -2.39 -0.02 0.88 16 34 H 0.15 1.98 8.06 -2.91 -0.02 1.96 16 35 H 0.15 2.36 8.06 -2.91 -0.02 2.34 16 36 H 0.15 2.10 8.06 -2.91 -0.02 2.07 16 37 H 0.15 1.94 8.06 -2.91 -0.02 1.92 16 38 H 0.20 3.27 8.06 -2.92 -0.02 3.25 16 Total: -1.00 -73.19 336.23 2.81 -70.39 By element: Atomic # 1 Polarization: 18.62 SS G_CDS: 0.24 Total: 18.86 kcal Atomic # 6 Polarization: -28.23 SS G_CDS: 4.99 Total: -23.24 kcal Atomic # 7 Polarization: -104.09 SS G_CDS: -5.08 Total: -109.17 kcal Atomic # 9 Polarization: -3.39 SS G_CDS: 0.78 Total: -2.61 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 1.88 Total: 45.77 kcal Total: -73.19 2.81 -70.39 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000425979829.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.257 kcal (2) G-P(sol) polarization free energy of solvation -73.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.389 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds