Wall clock time and date at job start Tue Mar 31 2020 06:53:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 120.00006 * 2 1 4 4 H 1.48502 * 109.47496 * 270.00473 * 3 2 1 5 5 H 1.48508 * 109.47255 * 30.00450 * 3 2 1 6 6 H 1.48503 * 109.47098 * 150.00337 * 3 2 1 7 7 C 1.37878 * 120.00098 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99657 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99714 * 359.97438 * 7 2 1 10 10 N 1.46499 * 109.46700 * 180.02562 * 9 7 2 11 11 C 1.34784 * 119.99893 * 180.02562 * 10 9 7 12 12 O 1.21283 * 119.99649 * 0.02562 * 11 10 9 13 13 C 1.50697 * 119.99774 * 179.72962 * 11 10 9 14 14 O 1.42905 * 109.47007 * 179.97438 * 13 11 10 15 15 C 1.35894 * 117.00317 * 179.97438 * 14 13 11 16 16 C 1.38764 * 120.16975 * 359.72198 * 15 14 13 17 17 C 1.37834 * 119.71082 * 179.86153 * 16 15 14 18 18 C 1.38958 * 120.62314 * 0.55048 * 17 16 15 19 19 C 1.37709 * 119.76938 * 359.43948 * 18 17 16 20 20 C 1.38423 * 120.17363 * 180.02562 * 15 14 13 21 21 C 1.50639 * 122.55688 * 180.80834 * 19 18 17 22 22 C 1.52724 * 110.60257 * 342.00807 * 21 19 18 23 23 C 1.53319 * 108.41139 * 51.10196 * 22 21 19 24 24 C 1.50647 * 117.69689 * 179.13124 * 18 17 16 25 25 H 0.97003 * 119.99632 * 359.97438 * 1 2 3 26 26 H 1.08998 * 109.46743 * 60.00597 * 9 7 2 27 27 H 1.08994 * 109.47542 * 300.00456 * 9 7 2 28 28 H 0.97005 * 120.00261 * 0.02562 * 10 9 7 29 29 H 1.09001 * 109.46809 * 299.99238 * 13 11 10 30 30 H 1.08993 * 109.47525 * 59.99679 * 13 11 10 31 31 H 1.07994 * 120.14571 * 0.13758 * 16 15 14 32 32 H 1.07999 * 119.69076 * 180.25076 * 17 16 15 33 33 H 1.07995 * 119.75272 * 0.04100 * 20 15 14 34 34 H 1.09007 * 109.24760 * 102.29313 * 21 19 18 35 35 H 1.08997 * 109.25460 * 221.71102 * 21 19 18 36 36 H 1.09006 * 109.67515 * 291.37357 * 22 21 19 37 37 H 1.08999 * 109.70814 * 170.85200 * 22 21 19 38 38 H 1.08992 * 109.68471 * 170.45150 * 23 22 21 39 39 H 1.09005 * 109.67615 * 49.89920 * 23 22 21 40 40 H 1.09004 * 109.25213 * 282.48551 * 24 18 17 41 41 H 1.08995 * 109.26077 * 41.91336 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0466 -1.4001 5 1 1.4466 2.6527 0.7002 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 2.2030 -3.6126 -0.0005 11 6 1.7538 -4.8834 -0.0011 12 8 0.5614 -5.1049 -0.0020 13 6 2.7331 -6.0287 -0.0072 14 8 2.0186 -7.2663 -0.0060 15 6 2.7588 -8.4060 -0.0116 16 6 4.1446 -8.3375 -0.0240 17 6 4.8861 -9.4995 -0.0267 18 6 4.2588 -10.7394 -0.0287 19 6 2.8835 -10.8099 -0.0162 20 6 2.1340 -9.6413 -0.0113 21 6 2.1391 -12.1194 0.0005 22 6 3.0516 -13.2620 -0.4402 23 6 4.3418 -13.1974 0.3856 24 6 5.1327 -11.9662 -0.0518 25 1 -0.4850 0.8401 0.0004 26 1 0.6241 -2.5566 -0.8903 27 1 0.6246 -2.5571 0.8896 28 1 3.1568 -3.4353 -0.0002 29 1 3.3560 -5.9693 -0.8997 30 1 3.3635 -5.9726 0.8802 31 1 4.6402 -7.3780 -0.0270 32 1 5.9647 -9.4458 -0.0323 33 1 1.0555 -9.6964 -0.0073 34 1 1.7798 -12.3157 1.0107 35 1 1.2877 -12.0575 -0.6773 36 1 3.2879 -13.1555 -1.4990 37 1 2.5540 -14.2166 -0.2694 38 1 4.9344 -14.0954 0.2117 39 1 4.0961 -13.1185 1.4447 40 1 5.5081 -12.1210 -1.0634 41 1 5.9746 -11.8207 0.6249 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000427648522.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:14 Heat of formation + Delta-G solvation = -74.109981 kcal Electronic energy + Delta-G solvation = -21597.899438 eV Core-core repulsion = 18248.841306 eV Total energy + Delta-G solvation = -3349.058132 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.57699 -39.22523 -38.02256 -35.42369 -34.24327 -32.74504 -32.40724 -29.94421 -29.65797 -28.19322 -26.46997 -23.93328 -22.99866 -22.40731 -22.22672 -20.01798 -19.48722 -17.90797 -17.37404 -16.20727 -16.16134 -15.89727 -15.33431 -15.24026 -14.86644 -14.65117 -14.18291 -14.11131 -14.06723 -13.51882 -13.14038 -13.07565 -12.82297 -12.53940 -12.35920 -12.13409 -12.00587 -11.58338 -11.32969 -11.19750 -11.02215 -10.92329 -10.74518 -10.69816 -10.60175 -10.35009 -9.44929 -9.14847 -8.88051 -8.78913 -8.09463 -7.98272 -6.20283 -4.27868 1.20099 1.33149 2.90886 3.19034 3.22161 3.28446 3.30759 3.59681 4.13924 4.33165 4.42979 4.48214 4.60032 4.71188 4.86700 4.89340 4.99429 5.07948 5.15545 5.20270 5.25809 5.26682 5.30379 5.33887 5.43968 5.55854 5.63262 5.70292 5.74845 5.81761 5.90307 6.01304 6.23553 6.29956 6.50523 6.69853 7.21581 7.29363 7.41691 7.45728 7.61140 7.91466 8.50253 8.71227 8.97431 9.38519 10.89852 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.049149 B = 0.002355 C = 0.002258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 569.561770 B =11885.597736 C =12396.424426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.063 3.937 3 Si 0.906 3.094 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.545 4.545 8 H 0.064 0.936 9 C 0.251 3.749 10 N -0.708 5.708 11 C 0.500 3.500 12 O -0.533 6.533 13 C 0.041 3.959 14 O -0.287 6.287 15 C 0.134 3.866 16 C -0.211 4.211 17 C -0.079 4.079 18 C -0.122 4.122 19 C -0.037 4.037 20 C -0.154 4.154 21 C -0.082 4.082 22 C -0.119 4.119 23 C -0.120 4.120 24 C -0.074 4.074 25 H 0.267 0.733 26 H 0.029 0.971 27 H 0.029 0.971 28 H 0.392 0.608 29 H 0.088 0.912 30 H 0.087 0.913 31 H 0.129 0.871 32 H 0.122 0.878 33 H 0.131 0.869 34 H 0.078 0.922 35 H 0.077 0.923 36 H 0.065 0.935 37 H 0.067 0.933 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.071 0.929 41 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.973 -24.696 -0.053 27.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.141 4.141 3 Si 0.733 3.267 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.583 4.583 8 H 0.082 0.918 9 C 0.131 3.869 10 N -0.358 5.358 11 C 0.283 3.717 12 O -0.410 6.410 13 C -0.038 4.038 14 O -0.199 6.199 15 C 0.088 3.912 16 C -0.230 4.230 17 C -0.098 4.098 18 C -0.122 4.122 19 C -0.037 4.037 20 C -0.173 4.173 21 C -0.119 4.119 22 C -0.157 4.157 23 C -0.158 4.158 24 C -0.111 4.111 25 H 0.076 0.924 26 H 0.047 0.953 27 H 0.047 0.953 28 H 0.225 0.775 29 H 0.106 0.894 30 H 0.105 0.895 31 H 0.147 0.853 32 H 0.140 0.860 33 H 0.148 0.852 34 H 0.096 0.904 35 H 0.095 0.905 36 H 0.084 0.916 37 H 0.085 0.915 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.090 0.910 41 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 10.699 -24.666 -0.049 26.887 hybrid contribution 1.157 1.335 -0.006 1.767 sum 11.856 -23.331 -0.055 26.171 Atomic orbital electron populations 1.69975 1.06123 1.27411 1.48623 1.24963 0.94943 0.99511 0.94634 0.86387 0.79582 0.82523 0.78243 1.20425 1.20967 1.19736 1.21199 0.93289 0.90307 1.53550 0.91795 1.19166 0.88189 0.81559 0.98011 1.46356 1.11394 1.05401 1.72663 1.19891 0.89154 0.83953 0.78723 1.90712 1.16419 1.84526 1.49311 1.22618 0.95034 0.82960 1.03205 1.86194 1.34079 1.11568 1.88062 1.18999 0.90009 0.86679 0.95512 1.21229 0.92838 0.99736 1.09167 1.20912 0.99507 0.91341 0.97996 1.19462 0.93009 0.94726 1.04993 1.19345 0.92561 0.94172 0.97654 1.20417 1.00597 0.89091 1.07205 1.20489 0.97836 0.91198 1.02347 1.21541 0.95979 0.97936 1.00210 1.21549 0.96537 0.97489 1.00208 1.20372 0.97034 0.91974 1.01682 0.92359 0.95292 0.95296 0.77546 0.89443 0.89469 0.85306 0.85981 0.85154 0.90377 0.90483 0.91579 0.91453 0.91596 0.91613 0.91048 0.91131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.93 13.29 55.43 0.74 -25.19 16 2 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 3 Si 0.91 20.65 29.54 -169.99 -5.02 15.63 16 4 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 5 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 6 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 7 C -0.55 -14.61 9.28 -34.44 -0.32 -14.93 16 8 H 0.06 1.59 7.60 -52.49 -0.40 1.19 16 9 C 0.25 6.61 5.43 -5.19 -0.03 6.58 16 10 N -0.71 -14.66 5.55 -61.48 -0.34 -15.01 16 11 C 0.50 10.19 7.91 -10.98 -0.09 10.10 16 12 O -0.53 -13.49 16.50 -14.35 -0.24 -13.73 16 13 C 0.04 0.61 5.22 36.00 0.19 0.80 16 14 O -0.29 -4.85 9.67 -39.31 -0.38 -5.23 16 15 C 0.13 1.89 6.68 -39.32 -0.26 1.63 16 16 C -0.21 -2.47 9.04 -39.53 -0.36 -2.83 16 17 C -0.08 -0.81 9.60 -39.46 -0.38 -1.19 16 18 C -0.12 -1.23 5.74 -104.57 -0.60 -1.83 16 19 C -0.04 -0.40 5.74 -104.62 -0.60 -1.00 16 20 C -0.15 -2.00 9.55 -39.29 -0.38 -2.37 16 21 C -0.08 -0.67 5.67 -28.05 -0.16 -0.83 16 22 C -0.12 -0.80 5.98 -26.71 -0.16 -0.96 16 23 C -0.12 -0.78 5.98 -26.70 -0.16 -0.94 16 24 C -0.07 -0.55 5.67 -28.05 -0.16 -0.70 16 25 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 26 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 27 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.39 6.69 8.32 -40.82 -0.34 6.35 16 29 H 0.09 1.06 7.66 -51.93 -0.40 0.66 16 30 H 0.09 1.06 7.68 -51.93 -0.40 0.66 16 31 H 0.13 1.27 6.33 -52.49 -0.33 0.94 16 32 H 0.12 0.96 8.05 -52.49 -0.42 0.54 16 33 H 0.13 1.63 8.05 -52.49 -0.42 1.21 16 34 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 35 H 0.08 0.60 8.12 -51.93 -0.42 0.17 16 36 H 0.07 0.46 8.10 -51.93 -0.42 0.04 16 37 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.07 0.45 8.10 -51.93 -0.42 0.03 16 40 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 41 H 0.07 0.46 8.12 -51.93 -0.42 0.04 16 LS Contribution 342.09 15.07 5.16 5.16 Total: -1.00 -33.29 342.09 -9.71 -43.00 By element: Atomic # 1 Polarization: 8.26 SS G_CDS: -6.07 Total: 2.19 kcal Atomic # 6 Polarization: -3.27 SS G_CDS: -3.56 Total: -6.82 kcal Atomic # 7 Polarization: -40.59 SS G_CDS: 0.40 Total: -40.20 kcal Atomic # 8 Polarization: -18.34 SS G_CDS: -0.62 Total: -18.95 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -33.29 -9.71 -43.00 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427648522.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.110 kcal (2) G-P(sol) polarization free energy of solvation -33.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds