Wall clock time and date at job start Tue Mar 31 2020 06:53:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 120.00006 * 2 1 4 4 H 1.48502 * 109.47496 * 270.00473 * 3 2 1 5 5 H 1.48508 * 109.47255 * 30.00450 * 3 2 1 6 6 H 1.48503 * 109.47098 * 150.00337 * 3 2 1 7 7 C 1.37878 * 120.00098 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99657 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99714 * 359.97438 * 7 2 1 10 10 N 1.46499 * 109.46700 * 180.02562 * 9 7 2 11 11 C 1.34784 * 119.99893 * 180.02562 * 10 9 7 12 12 O 1.21283 * 119.99649 * 0.02562 * 11 10 9 13 13 C 1.50697 * 119.99774 * 179.72962 * 11 10 9 14 14 O 1.42905 * 109.47007 * 179.97438 * 13 11 10 15 15 C 1.35894 * 117.00317 * 179.97438 * 14 13 11 16 16 C 1.38764 * 120.16975 * 359.72198 * 15 14 13 17 17 C 1.37834 * 119.71082 * 179.86153 * 16 15 14 18 18 C 1.38958 * 120.62314 * 0.55048 * 17 16 15 19 19 C 1.37709 * 119.76938 * 359.43948 * 18 17 16 20 20 C 1.38423 * 120.17363 * 180.02562 * 15 14 13 21 21 C 1.50639 * 122.55688 * 180.80834 * 19 18 17 22 22 C 1.52724 * 110.60257 * 342.00807 * 21 19 18 23 23 C 1.53319 * 108.41139 * 51.10196 * 22 21 19 24 24 C 1.50647 * 117.69689 * 179.13124 * 18 17 16 25 25 H 0.97003 * 119.99632 * 359.97438 * 1 2 3 26 26 H 1.08998 * 109.46743 * 60.00597 * 9 7 2 27 27 H 1.08994 * 109.47542 * 300.00456 * 9 7 2 28 28 H 0.97005 * 120.00261 * 0.02562 * 10 9 7 29 29 H 1.09001 * 109.46809 * 299.99238 * 13 11 10 30 30 H 1.08993 * 109.47525 * 59.99679 * 13 11 10 31 31 H 1.07994 * 120.14571 * 0.13758 * 16 15 14 32 32 H 1.07999 * 119.69076 * 180.25076 * 17 16 15 33 33 H 1.07995 * 119.75272 * 0.04100 * 20 15 14 34 34 H 1.09007 * 109.24760 * 102.29313 * 21 19 18 35 35 H 1.08997 * 109.25460 * 221.71102 * 21 19 18 36 36 H 1.09006 * 109.67515 * 291.37357 * 22 21 19 37 37 H 1.08999 * 109.70814 * 170.85200 * 22 21 19 38 38 H 1.08992 * 109.68471 * 170.45150 * 23 22 21 39 39 H 1.09005 * 109.67615 * 49.89920 * 23 22 21 40 40 H 1.09004 * 109.25213 * 282.48551 * 24 18 17 41 41 H 1.08995 * 109.26077 * 41.91336 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0466 -1.4001 5 1 1.4466 2.6527 0.7002 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 2.2030 -3.6126 -0.0005 11 6 1.7538 -4.8834 -0.0011 12 8 0.5614 -5.1049 -0.0020 13 6 2.7331 -6.0287 -0.0072 14 8 2.0186 -7.2663 -0.0060 15 6 2.7588 -8.4060 -0.0116 16 6 4.1446 -8.3375 -0.0240 17 6 4.8861 -9.4995 -0.0267 18 6 4.2588 -10.7394 -0.0287 19 6 2.8835 -10.8099 -0.0162 20 6 2.1340 -9.6413 -0.0113 21 6 2.1391 -12.1194 0.0005 22 6 3.0516 -13.2620 -0.4402 23 6 4.3418 -13.1974 0.3856 24 6 5.1327 -11.9662 -0.0518 25 1 -0.4850 0.8401 0.0004 26 1 0.6241 -2.5566 -0.8903 27 1 0.6246 -2.5571 0.8896 28 1 3.1568 -3.4353 -0.0002 29 1 3.3560 -5.9693 -0.8997 30 1 3.3635 -5.9726 0.8802 31 1 4.6402 -7.3780 -0.0270 32 1 5.9647 -9.4458 -0.0323 33 1 1.0555 -9.6964 -0.0073 34 1 1.7798 -12.3157 1.0107 35 1 1.2877 -12.0575 -0.6773 36 1 3.2879 -13.1555 -1.4990 37 1 2.5540 -14.2166 -0.2694 38 1 4.9344 -14.0954 0.2117 39 1 4.0961 -13.1185 1.4447 40 1 5.5081 -12.1210 -1.0634 41 1 5.9746 -11.8207 0.6249 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000427648522.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:14 Heat of formation + Delta-G solvation = -94.658693 kcal Electronic energy + Delta-G solvation = -21598.790497 eV Core-core repulsion = 18248.841306 eV Total energy + Delta-G solvation = -3349.949191 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.55513 -40.58476 -39.25941 -36.31134 -36.08412 -34.43295 -33.47942 -31.04516 -30.58417 -29.48278 -28.05451 -24.78348 -24.56883 -23.28657 -23.20006 -21.64385 -20.34064 -19.22778 -18.74706 -17.74801 -17.42258 -17.04026 -16.77277 -16.57402 -15.97763 -15.76898 -15.55452 -15.30812 -14.70994 -14.65226 -14.31765 -14.10094 -14.08808 -13.77250 -13.70043 -13.42899 -13.01933 -12.94652 -12.77477 -12.67688 -12.24972 -12.13478 -11.75133 -11.59007 -11.51427 -11.32875 -11.23654 -10.88826 -10.83047 -9.95095 -9.72391 -8.99379 -8.30625 -6.47797 0.35631 0.44775 1.43112 1.45996 1.55720 1.56728 1.66534 2.36701 2.73995 2.81616 3.04516 3.65941 3.76011 3.83794 3.92620 4.03224 4.08365 4.09533 4.20201 4.26446 4.29168 4.56391 4.60808 4.69020 4.78496 4.94467 5.04716 5.06554 5.07577 5.12542 5.18434 5.19049 5.26256 5.39694 5.40791 5.48241 5.50582 5.61185 5.72310 5.80418 5.90044 6.39284 6.61657 6.78550 7.19892 7.36636 8.81669 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.049149 B = 0.002355 C = 0.002258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 569.561770 B =11885.597736 C =12396.424426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.002 3.998 3 Si 0.988 3.012 4 H -0.271 1.271 5 H -0.285 1.285 6 H -0.253 1.253 7 C -0.556 4.556 8 H 0.089 0.911 9 C 0.266 3.734 10 N -0.697 5.697 11 C 0.496 3.504 12 O -0.592 6.592 13 C 0.055 3.945 14 O -0.324 6.324 15 C 0.104 3.896 16 C -0.213 4.213 17 C -0.081 4.081 18 C -0.122 4.122 19 C -0.044 4.044 20 C -0.177 4.177 21 C -0.084 4.084 22 C -0.117 4.117 23 C -0.120 4.120 24 C -0.074 4.074 25 H 0.269 0.731 26 H -0.011 1.011 27 H -0.011 1.011 28 H 0.414 0.586 29 H 0.123 0.877 30 H 0.123 0.877 31 H 0.150 0.850 32 H 0.152 0.848 33 H 0.118 0.882 34 H 0.082 0.918 35 H 0.075 0.925 36 H 0.064 0.936 37 H 0.082 0.918 38 H 0.084 0.916 39 H 0.061 0.939 40 H 0.082 0.918 41 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.951 -25.668 -0.057 30.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.198 4.198 3 Si 0.811 3.189 4 H -0.196 1.196 5 H -0.211 1.211 6 H -0.177 1.177 7 C -0.593 4.593 8 H 0.107 0.893 9 C 0.143 3.857 10 N -0.349 5.349 11 C 0.282 3.718 12 O -0.472 6.472 13 C -0.023 4.023 14 O -0.238 6.238 15 C 0.059 3.941 16 C -0.232 4.232 17 C -0.098 4.098 18 C -0.122 4.122 19 C -0.044 4.044 20 C -0.195 4.195 21 C -0.121 4.121 22 C -0.154 4.154 23 C -0.157 4.157 24 C -0.111 4.111 25 H 0.078 0.922 26 H 0.007 0.993 27 H 0.007 0.993 28 H 0.250 0.750 29 H 0.141 0.859 30 H 0.141 0.859 31 H 0.167 0.833 32 H 0.170 0.830 33 H 0.136 0.864 34 H 0.100 0.900 35 H 0.094 0.906 36 H 0.083 0.917 37 H 0.100 0.900 38 H 0.103 0.897 39 H 0.080 0.920 40 H 0.100 0.900 41 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 14.745 -25.674 -0.053 29.607 hybrid contribution -0.107 1.497 -0.006 1.500 sum 14.638 -24.177 -0.058 28.263 Atomic orbital electron populations 1.70147 1.08363 1.28642 1.49851 1.26113 0.95801 1.04065 0.93831 0.85112 0.78487 0.76734 0.78601 1.19590 1.21114 1.17692 1.21609 0.94479 0.90233 1.53015 0.89336 1.18612 0.88671 0.84052 0.94344 1.46013 1.11675 1.04640 1.72589 1.20914 0.89416 0.84950 0.76531 1.90682 1.19487 1.85434 1.51639 1.22538 0.92943 0.80316 1.06508 1.86120 1.35899 1.12670 1.89102 1.19239 0.91178 0.85784 0.97866 1.21476 0.91685 1.01378 1.08612 1.21313 1.00987 0.90787 0.96754 1.19908 0.92963 0.96161 1.03214 1.19648 0.93287 0.94322 0.97128 1.20589 1.00481 0.89997 1.08472 1.20562 0.98073 0.90799 1.02677 1.21550 0.95994 0.97755 1.00120 1.21570 0.96415 0.97912 0.99826 1.20464 0.96953 0.90942 1.02725 0.92221 0.99290 0.99287 0.74955 0.85893 0.85903 0.83263 0.83009 0.86384 0.89989 0.90608 0.91718 0.89962 0.89725 0.91987 0.90003 0.89677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.29 13.29 21.45 0.28 -56.01 16 2 C 0.00 0.08 5.46 84.66 0.46 0.55 16 3 Si 0.99 41.88 29.54 68.60 2.03 43.90 16 4 H -0.27 -11.08 7.11 99.48 0.71 -10.38 16 5 H -0.29 -12.08 7.11 99.48 0.71 -11.37 16 6 H -0.25 -9.89 7.11 99.48 0.71 -9.18 16 7 C -0.56 -29.84 9.28 25.60 0.24 -29.60 16 8 H 0.09 4.21 7.60 -2.91 -0.02 4.19 16 9 C 0.27 14.61 5.43 85.63 0.46 15.08 16 10 N -0.70 -29.12 5.55 -466.79 -2.59 -31.71 16 11 C 0.50 20.61 7.91 87.65 0.69 21.30 16 12 O -0.59 -31.69 16.50 16.00 0.26 -31.43 16 13 C 0.05 1.56 5.22 71.24 0.37 1.93 16 14 O -0.32 -11.12 9.67 -73.32 -0.71 -11.83 16 15 C 0.10 2.92 6.68 22.44 0.15 3.07 16 16 C -0.21 -4.52 9.04 22.30 0.20 -4.32 16 17 C -0.08 -1.41 9.60 22.35 0.21 -1.20 16 18 C -0.12 -2.19 5.74 -19.83 -0.11 -2.31 16 19 C -0.04 -0.92 5.74 -19.87 -0.11 -1.03 16 20 C -0.18 -4.71 9.55 22.46 0.21 -4.49 16 21 C -0.08 -1.32 5.67 29.74 0.17 -1.16 16 22 C -0.12 -1.32 5.98 30.61 0.18 -1.14 16 23 C -0.12 -1.21 5.98 30.61 0.18 -1.02 16 24 C -0.07 -0.85 5.67 29.74 0.17 -0.69 16 25 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 26 H -0.01 -0.68 8.14 -2.39 -0.02 -0.69 16 27 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 28 H 0.41 13.46 8.32 -92.70 -0.77 12.68 16 29 H 0.12 2.63 7.66 -2.39 -0.02 2.62 16 30 H 0.12 2.63 7.68 -2.39 -0.02 2.61 16 31 H 0.15 2.41 6.33 -2.91 -0.02 2.39 16 32 H 0.15 1.72 8.05 -2.91 -0.02 1.70 16 33 H 0.12 3.25 8.05 -2.91 -0.02 3.23 16 34 H 0.08 1.21 8.14 -2.38 -0.02 1.19 16 35 H 0.08 1.18 8.12 -2.39 -0.02 1.16 16 36 H 0.06 0.76 8.10 -2.38 -0.02 0.74 16 37 H 0.08 0.69 8.14 -2.39 -0.02 0.68 16 38 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 39 H 0.06 0.68 8.10 -2.38 -0.02 0.67 16 40 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 41 H 0.08 0.77 8.12 -2.39 -0.02 0.75 16 Total: -1.00 -77.07 342.09 3.02 -74.05 By element: Atomic # 1 Polarization: 17.77 SS G_CDS: 0.26 Total: 18.04 kcal Atomic # 6 Polarization: -8.51 SS G_CDS: 3.49 Total: -5.02 kcal Atomic # 7 Polarization: -85.41 SS G_CDS: -2.30 Total: -87.72 kcal Atomic # 8 Polarization: -42.81 SS G_CDS: -0.45 Total: -43.25 kcal Atomic # 14 Polarization: 41.88 SS G_CDS: 2.03 Total: 43.90 kcal Total: -77.07 3.02 -74.05 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427648522.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.608 kcal (2) G-P(sol) polarization free energy of solvation -77.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds