Wall clock time and date at job start Tue Mar 31 2020 06:50:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86796 * 120.00427 * 2 1 4 4 H 1.48500 * 109.46936 * 240.00136 * 3 2 1 5 5 H 1.48503 * 109.46975 * 359.97438 * 3 2 1 6 6 H 1.48492 * 109.47115 * 120.00021 * 3 2 1 7 7 C 1.37880 * 119.99411 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99984 * 175.14247 * 7 2 1 9 9 C 1.50702 * 120.00225 * 355.42108 * 7 2 1 10 10 C 1.53004 * 115.54830 * 274.92669 * 9 7 2 11 11 N 1.46900 * 109.47039 * 296.30704 * 10 9 7 12 12 C 1.46896 * 110.99985 * 174.87700 * 11 10 9 13 13 C 1.50699 * 109.47149 * 179.97438 * 12 11 10 14 14 C 1.38257 * 119.94213 * 269.72478 * 13 12 11 15 15 C 1.38205 * 120.11099 * 179.77573 * 14 13 12 16 16 C 1.38701 * 120.06379 * 0.56650 * 15 14 13 17 17 C 1.38973 * 119.82444 * 359.61690 * 16 15 14 18 18 C 1.38201 * 119.94609 * 89.99966 * 13 12 11 19 19 O 1.36108 * 120.78725 * 180.26758 * 17 16 15 20 20 C 1.43178 * 116.71312 * 342.82473 * 19 17 16 21 21 C 1.53467 * 108.25498 * 46.15449 * 20 19 17 22 22 O 1.36114 * 119.39436 * 179.53708 * 16 15 14 23 23 C 1.52992 * 117.49932 * 129.25596 * 9 7 2 24 24 C 1.52992 * 117.50106 * 60.59321 * 9 7 2 25 25 H 0.96999 * 119.99153 * 0.02562 * 1 2 3 26 26 H 1.08996 * 109.47140 * 56.30262 * 10 9 7 27 27 H 1.08993 * 109.47118 * 176.30444 * 10 9 7 28 28 H 1.00898 * 110.99671 * 298.82875 * 11 10 9 29 29 H 1.09003 * 109.46912 * 299.99227 * 12 11 10 30 30 H 1.08999 * 109.47563 * 59.99871 * 12 11 10 31 31 H 1.07994 * 119.94521 * 0.03247 * 14 13 12 32 32 H 1.07991 * 119.96372 * 180.29228 * 15 14 13 33 33 H 1.07997 * 119.96219 * 359.94400 * 18 13 12 34 34 H 1.09000 * 109.70949 * 165.85234 * 20 19 17 35 35 H 1.09003 * 109.70167 * 286.46619 * 20 19 17 36 36 H 1.09001 * 109.70520 * 59.95269 * 21 20 19 37 37 H 1.09002 * 109.70956 * 180.57647 * 21 20 19 38 38 H 1.08997 * 117.50184 * 0.02562 * 23 9 7 39 39 H 1.09003 * 117.49948 * 145.01909 * 23 9 7 40 40 H 1.09007 * 117.50107 * 214.98374 * 24 9 7 41 41 H 1.09000 * 117.49989 * 359.97438 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2844 2.7464 -0.0006 6 1 3.1030 1.6962 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0816 -1.1960 -0.0787 9 6 1.2545 -2.4971 0.1053 10 6 0.9187 -2.9527 1.5268 11 7 2.1623 -3.2130 2.2642 12 6 1.8831 -3.5356 3.6698 13 6 3.1796 -3.7964 4.3924 14 6 3.6938 -5.0787 4.4463 15 6 4.8849 -5.3210 5.1040 16 6 5.5617 -4.2799 5.7221 17 6 5.0429 -2.9916 5.6712 18 6 3.8497 -2.7544 5.0050 19 8 5.6934 -1.9546 6.2662 20 6 6.6895 -2.2922 7.2377 21 6 7.5668 -3.4101 6.6582 22 8 6.7288 -4.5356 6.3741 23 6 1.5728 -3.5804 -0.9271 24 6 0.2451 -2.8218 -0.9975 25 1 -0.4849 0.8401 -0.0004 26 1 0.3521 -2.1720 2.0342 27 1 0.3235 -3.8648 1.4849 28 1 2.6968 -3.9468 1.8240 29 1 1.3673 -2.6980 4.1393 30 1 1.2542 -4.4244 3.7207 31 1 3.1660 -5.8916 3.9700 32 1 5.2868 -6.3227 5.1406 33 1 3.4440 -1.7543 4.9645 34 1 7.3034 -1.4178 7.4538 35 1 6.2083 -2.6392 8.1521 36 1 8.0430 -3.0652 5.7404 37 1 8.3289 -3.6931 7.3844 38 1 2.3249 -3.3509 -1.6819 39 1 1.5426 -4.6177 -0.5938 40 1 -0.6581 -3.3604 -0.7105 41 1 0.1231 -2.0929 -1.7987 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000430056329.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:02 Heat of formation + Delta-G solvation = -19.581197 kcal Electronic energy + Delta-G solvation = -22505.772819 eV Core-core repulsion = 19159.079233 eV Total energy + Delta-G solvation = -3346.693587 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.24095 -38.21661 -37.27435 -36.82958 -34.30617 -31.77199 -31.22815 -30.66042 -28.83888 -26.27360 -25.29584 -24.39295 -22.98777 -22.36067 -20.95095 -20.37274 -18.97513 -18.57928 -17.29844 -17.12900 -16.15795 -15.48904 -15.22688 -14.92614 -14.46021 -14.43279 -14.33146 -13.98968 -13.83423 -13.76881 -13.35654 -13.06408 -12.83306 -12.15488 -11.86518 -11.41488 -11.39653 -11.21738 -11.07658 -10.94987 -10.79899 -10.64039 -10.47577 -10.38612 -10.08423 -9.32305 -8.85521 -8.52298 -8.26709 -8.07239 -7.91452 -7.50246 -5.88404 -3.90243 1.34510 1.40247 2.95505 3.14959 3.41346 3.44795 3.50023 3.74919 4.08547 4.54033 4.60331 4.63019 4.70256 4.90209 5.00713 5.16451 5.24989 5.27062 5.40212 5.42999 5.50374 5.54167 5.65144 6.01254 6.05850 6.18027 6.23964 6.24943 6.37668 6.54028 6.62121 6.66247 6.77781 6.80839 6.88631 6.93680 7.20974 7.41448 7.57045 7.61047 7.97217 8.04094 8.18622 8.62582 9.08571 9.72654 11.20782 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.017607 B = 0.004025 C = 0.003492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1589.872849 B = 6955.593326 C = 8017.250278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.067 3.933 3 Si 0.888 3.112 4 H -0.280 1.280 5 H -0.290 1.290 6 H -0.276 1.276 7 C -0.467 4.467 8 H 0.058 0.942 9 C 0.050 3.950 10 C 0.107 3.893 11 N -0.663 5.663 12 C 0.099 3.901 13 C -0.063 4.063 14 C -0.111 4.111 15 C -0.115 4.115 16 C 0.040 3.960 17 C 0.048 3.952 18 C -0.088 4.088 19 O -0.306 6.306 20 C 0.021 3.979 21 C 0.021 3.979 22 O -0.311 6.311 23 C -0.217 4.217 24 C -0.152 4.152 25 H 0.257 0.743 26 H 0.073 0.927 27 H -0.003 1.003 28 H 0.332 0.668 29 H 0.079 0.921 30 H 0.030 0.970 31 H 0.129 0.871 32 H 0.131 0.869 33 H 0.138 0.862 34 H 0.119 0.881 35 H 0.074 0.926 36 H 0.077 0.923 37 H 0.118 0.882 38 H 0.075 0.925 39 H 0.059 0.941 40 H 0.058 0.942 41 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.330 -8.846 14.167 19.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.134 4.134 3 Si 0.716 3.284 4 H -0.205 1.205 5 H -0.216 1.216 6 H -0.202 1.202 7 C -0.505 4.505 8 H 0.076 0.924 9 C 0.049 3.951 10 C -0.021 4.021 11 N -0.293 5.293 12 C -0.030 4.030 13 C -0.064 4.064 14 C -0.130 4.130 15 C -0.133 4.133 16 C -0.004 4.004 17 C 0.004 3.996 18 C -0.107 4.107 19 O -0.221 6.221 20 C -0.055 4.055 21 C -0.055 4.055 22 O -0.226 6.226 23 C -0.254 4.254 24 C -0.190 4.190 25 H 0.067 0.933 26 H 0.091 0.909 27 H 0.015 0.985 28 H 0.149 0.851 29 H 0.097 0.903 30 H 0.048 0.952 31 H 0.147 0.853 32 H 0.149 0.851 33 H 0.156 0.844 34 H 0.137 0.863 35 H 0.093 0.907 36 H 0.095 0.905 37 H 0.136 0.864 38 H 0.094 0.906 39 H 0.077 0.923 40 H 0.077 0.923 41 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 10.317 -8.011 14.327 19.388 hybrid contribution 0.303 0.140 0.037 0.336 sum 10.620 -7.872 14.364 19.521 Atomic orbital electron populations 1.70012 1.05747 1.26133 1.50697 1.24924 0.94756 0.98667 0.95101 0.86737 0.79636 0.83439 0.78603 1.20545 1.21600 1.20178 1.20257 0.92500 0.88435 1.49269 0.92430 1.18813 0.97669 0.93028 0.85608 1.21563 0.88439 0.96451 0.95659 1.60314 1.21765 1.47621 0.99566 1.20861 0.91760 0.99605 0.90772 1.19674 0.97297 0.92152 0.97281 1.20826 0.95530 0.96801 0.99826 1.20320 0.96092 0.97942 0.98991 1.18845 0.88224 0.93463 0.99915 1.18885 0.94421 0.86281 1.00056 1.20377 0.91675 1.00512 0.98114 1.86349 1.51316 1.30406 1.54021 1.23583 0.90544 1.00295 0.91069 1.23590 0.92768 0.86938 1.02204 1.86273 1.29465 1.33564 1.73302 1.22993 1.00608 0.95470 1.06376 1.22492 0.90541 1.01533 1.04474 0.93348 0.90897 0.98542 0.85054 0.90302 0.95203 0.85347 0.85131 0.84424 0.86299 0.90733 0.90520 0.86371 0.90612 0.92291 0.92334 0.89751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.39 12.65 55.43 0.70 -24.68 16 2 C 0.07 1.86 5.43 -17.82 -0.10 1.77 16 3 Si 0.89 21.80 29.54 -169.99 -5.02 16.78 16 4 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 7 C -0.47 -12.85 8.71 -34.44 -0.30 -13.15 16 8 H 0.06 1.62 7.82 -52.49 -0.41 1.21 16 9 C 0.05 1.21 1.64 -155.67 -0.25 0.96 16 10 C 0.11 2.36 5.51 -3.82 -0.02 2.34 16 11 N -0.66 -12.87 6.34 -115.06 -0.73 -13.60 16 12 C 0.10 1.59 5.80 -4.98 -0.03 1.56 16 13 C -0.06 -0.95 5.39 -104.63 -0.56 -1.51 16 14 C -0.11 -1.46 9.69 -39.59 -0.38 -1.84 16 15 C -0.11 -1.48 9.96 -39.42 -0.39 -1.87 16 16 C 0.04 0.56 6.49 -39.14 -0.25 0.31 16 17 C 0.05 0.72 6.49 -39.14 -0.25 0.47 16 18 C -0.09 -1.38 9.62 -39.42 -0.38 -1.76 16 19 O -0.31 -4.28 10.42 -32.86 -0.34 -4.62 16 20 C 0.02 0.19 7.26 37.40 0.27 0.46 16 21 C 0.02 0.18 7.26 37.40 0.27 0.45 16 22 O -0.31 -3.88 10.42 -32.88 -0.34 -4.22 16 23 C -0.22 -4.76 9.96 -26.70 -0.27 -5.03 16 24 C -0.15 -3.62 9.15 -26.70 -0.24 -3.87 16 25 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 26 H 0.07 1.77 8.13 -51.93 -0.42 1.35 16 27 H 0.00 -0.07 8.10 -51.93 -0.42 -0.49 16 28 H 0.33 6.13 8.78 -39.29 -0.34 5.78 16 29 H 0.08 1.30 8.08 -51.93 -0.42 0.88 16 30 H 0.03 0.43 8.08 -51.93 -0.42 0.02 16 31 H 0.13 1.42 8.06 -52.49 -0.42 1.00 16 32 H 0.13 1.41 8.06 -52.49 -0.42 0.98 16 33 H 0.14 2.22 8.06 -52.49 -0.42 1.80 16 34 H 0.12 0.73 8.14 -51.93 -0.42 0.30 16 35 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.12 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.08 1.67 8.14 -51.93 -0.42 1.25 16 39 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 40 H 0.06 1.31 8.14 -51.93 -0.42 0.88 16 41 H 0.08 2.17 8.14 -51.93 -0.42 1.75 16 LS Contribution 345.67 15.07 5.21 5.21 Total: -1.00 -30.82 345.67 -9.65 -40.47 By element: Atomic # 1 Polarization: 11.60 SS G_CDS: -6.22 Total: 5.38 kcal Atomic # 6 Polarization: -17.82 SS G_CDS: -2.90 Total: -20.72 kcal Atomic # 7 Polarization: -38.25 SS G_CDS: -0.03 Total: -38.28 kcal Atomic # 8 Polarization: -8.15 SS G_CDS: -0.69 Total: -8.84 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -30.82 -9.65 -40.47 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430056329.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.887 kcal (2) G-P(sol) polarization free energy of solvation -30.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds