Wall clock time and date at job start Tue Mar 31 2020 06:50:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86796 * 120.00427 * 2 1 4 4 H 1.48500 * 109.46936 * 240.00136 * 3 2 1 5 5 H 1.48503 * 109.46975 * 359.97438 * 3 2 1 6 6 H 1.48492 * 109.47115 * 120.00021 * 3 2 1 7 7 C 1.37880 * 119.99411 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99984 * 175.14247 * 7 2 1 9 9 C 1.50702 * 120.00225 * 355.42108 * 7 2 1 10 10 C 1.53004 * 115.54830 * 274.92669 * 9 7 2 11 11 N 1.46900 * 109.47039 * 296.30704 * 10 9 7 12 12 C 1.46896 * 110.99985 * 174.87700 * 11 10 9 13 13 C 1.50699 * 109.47149 * 179.97438 * 12 11 10 14 14 C 1.38257 * 119.94213 * 269.72478 * 13 12 11 15 15 C 1.38205 * 120.11099 * 179.77573 * 14 13 12 16 16 C 1.38701 * 120.06379 * 0.56650 * 15 14 13 17 17 C 1.38973 * 119.82444 * 359.61690 * 16 15 14 18 18 C 1.38201 * 119.94609 * 89.99966 * 13 12 11 19 19 O 1.36108 * 120.78725 * 180.26758 * 17 16 15 20 20 C 1.43178 * 116.71312 * 342.82473 * 19 17 16 21 21 C 1.53467 * 108.25498 * 46.15449 * 20 19 17 22 22 O 1.36114 * 119.39436 * 179.53708 * 16 15 14 23 23 C 1.52992 * 117.49932 * 129.25596 * 9 7 2 24 24 C 1.52992 * 117.50106 * 60.59321 * 9 7 2 25 25 H 0.96999 * 119.99153 * 0.02562 * 1 2 3 26 26 H 1.08996 * 109.47140 * 56.30262 * 10 9 7 27 27 H 1.08993 * 109.47118 * 176.30444 * 10 9 7 28 28 H 1.00898 * 110.99671 * 298.82875 * 11 10 9 29 29 H 1.09003 * 109.46912 * 299.99227 * 12 11 10 30 30 H 1.08999 * 109.47563 * 59.99871 * 12 11 10 31 31 H 1.07994 * 119.94521 * 0.03247 * 14 13 12 32 32 H 1.07991 * 119.96372 * 180.29228 * 15 14 13 33 33 H 1.07997 * 119.96219 * 359.94400 * 18 13 12 34 34 H 1.09000 * 109.70949 * 165.85234 * 20 19 17 35 35 H 1.09003 * 109.70167 * 286.46619 * 20 19 17 36 36 H 1.09001 * 109.70520 * 59.95269 * 21 20 19 37 37 H 1.09002 * 109.70956 * 180.57647 * 21 20 19 38 38 H 1.08997 * 117.50184 * 0.02562 * 23 9 7 39 39 H 1.09003 * 117.49948 * 145.01909 * 23 9 7 40 40 H 1.09007 * 117.50107 * 214.98374 * 24 9 7 41 41 H 1.09000 * 117.49989 * 359.97438 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2844 2.7464 -0.0006 6 1 3.1030 1.6962 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0816 -1.1960 -0.0787 9 6 1.2545 -2.4971 0.1053 10 6 0.9187 -2.9527 1.5268 11 7 2.1623 -3.2130 2.2642 12 6 1.8831 -3.5356 3.6698 13 6 3.1796 -3.7964 4.3924 14 6 3.6938 -5.0787 4.4463 15 6 4.8849 -5.3210 5.1040 16 6 5.5617 -4.2799 5.7221 17 6 5.0429 -2.9916 5.6712 18 6 3.8497 -2.7544 5.0050 19 8 5.6934 -1.9546 6.2662 20 6 6.6895 -2.2922 7.2377 21 6 7.5668 -3.4101 6.6582 22 8 6.7288 -4.5356 6.3741 23 6 1.5728 -3.5804 -0.9271 24 6 0.2451 -2.8218 -0.9975 25 1 -0.4849 0.8401 -0.0004 26 1 0.3521 -2.1720 2.0342 27 1 0.3235 -3.8648 1.4849 28 1 2.6968 -3.9468 1.8240 29 1 1.3673 -2.6980 4.1393 30 1 1.2542 -4.4244 3.7207 31 1 3.1660 -5.8916 3.9700 32 1 5.2868 -6.3227 5.1406 33 1 3.4440 -1.7543 4.9645 34 1 7.3034 -1.4178 7.4538 35 1 6.2083 -2.6392 8.1521 36 1 8.0430 -3.0652 5.7404 37 1 8.3289 -3.6931 7.3844 38 1 2.3249 -3.3509 -1.6819 39 1 1.5426 -4.6177 -0.5938 40 1 -0.6581 -3.3604 -0.7105 41 1 0.1231 -2.0929 -1.7987 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000430056329.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:02 Heat of formation + Delta-G solvation = -38.389999 kcal Electronic energy + Delta-G solvation = -22506.588430 eV Core-core repulsion = 19159.079233 eV Total energy + Delta-G solvation = -3347.509197 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.18788 -39.37732 -38.51353 -38.21819 -35.76411 -33.86477 -32.22014 -31.73571 -29.86872 -27.85506 -27.01712 -25.54197 -24.32221 -23.47150 -22.75350 -21.38562 -20.84953 -19.56831 -18.31037 -18.12739 -17.91299 -16.81260 -16.43226 -16.37143 -15.92305 -15.52680 -15.38512 -15.34888 -15.29534 -14.81834 -14.80047 -14.55195 -13.94969 -13.64648 -13.22043 -13.08709 -12.79844 -12.73693 -12.61748 -12.40059 -12.31328 -12.01072 -11.95491 -11.94651 -11.42730 -11.19825 -10.85012 -10.29986 -9.88727 -9.58094 -9.12423 -8.91839 -8.01193 -6.07235 0.26815 0.34044 1.42324 1.44696 1.51358 2.07468 2.30394 2.48882 2.66183 3.28636 3.31466 3.44152 3.68873 3.75355 3.92748 3.96416 4.10337 4.13281 4.33911 4.37104 4.44281 4.51560 4.57455 4.58739 4.65910 4.75204 4.77176 4.87318 4.97426 5.03790 5.11129 5.15827 5.18477 5.34695 5.60010 5.69551 5.71850 5.75463 5.90316 5.93503 6.36792 6.43569 6.53834 6.77199 6.95781 7.57517 9.06905 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.017607 B = 0.004025 C = 0.003492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1589.872849 B = 6955.593326 C = 8017.250278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.023 3.977 3 Si 0.940 3.060 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.279 1.279 7 C -0.478 4.478 8 H 0.043 0.957 9 C 0.022 3.978 10 C 0.123 3.877 11 N -0.677 5.677 12 C 0.105 3.895 13 C -0.074 4.074 14 C -0.104 4.104 15 C -0.114 4.114 16 C 0.036 3.964 17 C 0.036 3.964 18 C -0.111 4.111 19 O -0.331 6.331 20 C 0.013 3.987 21 C 0.016 3.984 22 O -0.319 6.319 23 C -0.189 4.189 24 C -0.159 4.159 25 H 0.255 0.745 26 H 0.040 0.960 27 H 0.016 0.984 28 H 0.340 0.660 29 H 0.064 0.936 30 H 0.053 0.947 31 H 0.154 0.846 32 H 0.156 0.844 33 H 0.119 0.881 34 H 0.150 0.850 35 H 0.082 0.918 36 H 0.074 0.926 37 H 0.158 0.842 38 H 0.071 0.929 39 H 0.092 0.908 40 H 0.072 0.928 41 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.873 -10.598 15.083 21.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.176 4.176 3 Si 0.767 3.233 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.205 1.205 7 C -0.516 4.516 8 H 0.061 0.939 9 C 0.021 3.979 10 C -0.006 4.006 11 N -0.308 5.308 12 C -0.023 4.023 13 C -0.074 4.074 14 C -0.123 4.123 15 C -0.132 4.132 16 C -0.009 4.009 17 C -0.009 4.009 18 C -0.131 4.131 19 O -0.247 6.247 20 C -0.062 4.062 21 C -0.059 4.059 22 O -0.234 6.234 23 C -0.226 4.226 24 C -0.198 4.198 25 H 0.064 0.936 26 H 0.058 0.942 27 H 0.034 0.966 28 H 0.158 0.842 29 H 0.082 0.918 30 H 0.071 0.929 31 H 0.172 0.828 32 H 0.174 0.826 33 H 0.137 0.863 34 H 0.167 0.833 35 H 0.100 0.900 36 H 0.092 0.908 37 H 0.176 0.824 38 H 0.090 0.910 39 H 0.110 0.890 40 H 0.090 0.910 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 11.881 -9.768 15.249 21.659 hybrid contribution -0.063 0.677 -0.181 0.704 sum 11.818 -9.091 15.068 21.198 Atomic orbital electron populations 1.70104 1.06688 1.26521 1.51780 1.25520 0.95480 1.01328 0.95230 0.85905 0.78581 0.80423 0.78393 1.20010 1.21144 1.20499 1.20493 0.92076 0.90288 1.48743 0.93856 1.18935 0.98400 0.93146 0.87381 1.21203 0.89332 0.96082 0.93995 1.60166 1.20889 1.48720 1.01002 1.20797 0.92821 0.99956 0.88762 1.19593 0.97008 0.92981 0.97867 1.21062 0.95537 0.96442 0.99258 1.20663 0.95720 0.98830 0.98022 1.19047 0.88896 0.93177 0.99800 1.18961 0.94407 0.87138 1.00359 1.20387 0.92843 1.00109 0.99742 1.86301 1.52423 1.30924 1.55030 1.23971 0.90013 1.01993 0.90219 1.23927 0.92769 0.86032 1.03177 1.86259 1.29048 1.35219 1.72903 1.22976 0.98753 0.96398 1.04482 1.22388 0.91965 1.01816 1.03596 0.93559 0.94187 0.96601 0.84201 0.91752 0.92911 0.82809 0.82621 0.86304 0.83278 0.89999 0.90756 0.82432 0.91015 0.89004 0.90962 0.92531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.13 12.65 21.45 0.27 -52.86 16 2 C 0.02 1.31 5.43 84.65 0.46 1.77 16 3 Si 0.94 45.48 29.54 68.60 2.03 47.51 16 4 H -0.27 -12.96 7.11 99.48 0.71 -12.25 16 5 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 6 H -0.28 -13.54 7.11 99.48 0.71 -12.83 16 7 C -0.48 -26.66 8.71 25.60 0.22 -26.43 16 8 H 0.04 2.48 7.82 -2.91 -0.02 2.45 16 9 C 0.02 1.08 1.64 -52.93 -0.09 0.99 16 10 C 0.12 5.35 5.51 86.30 0.48 5.83 16 11 N -0.68 -25.91 6.34 -517.94 -3.29 -29.20 16 12 C 0.11 3.32 5.80 85.56 0.50 3.82 16 13 C -0.07 -2.17 5.39 -19.87 -0.11 -2.28 16 14 C -0.10 -2.51 9.69 22.27 0.22 -2.29 16 15 C -0.11 -2.68 9.96 22.37 0.22 -2.45 16 16 C 0.04 0.96 6.49 22.56 0.15 1.10 16 17 C 0.04 1.08 6.49 22.56 0.15 1.23 16 18 C -0.11 -3.61 9.62 22.37 0.22 -3.39 16 19 O -0.33 -9.22 10.42 -82.56 -0.86 -10.08 16 20 C 0.01 0.21 7.26 72.14 0.52 0.73 16 21 C 0.02 0.24 7.26 72.14 0.52 0.76 16 22 O -0.32 -7.27 10.42 -82.62 -0.86 -8.13 16 23 C -0.19 -7.96 9.96 30.61 0.30 -7.65 16 24 C -0.16 -7.53 9.15 30.61 0.28 -7.25 16 25 H 0.26 14.38 8.31 -92.71 -0.77 13.61 16 26 H 0.04 1.98 8.13 -2.39 -0.02 1.96 16 27 H 0.02 0.63 8.10 -2.39 -0.02 0.61 16 28 H 0.34 11.99 8.78 -89.70 -0.79 11.21 16 29 H 0.06 2.19 8.08 -2.39 -0.02 2.17 16 30 H 0.05 1.43 8.08 -2.39 -0.02 1.41 16 31 H 0.15 2.86 8.06 -2.91 -0.02 2.83 16 32 H 0.16 2.82 8.06 -2.92 -0.02 2.79 16 33 H 0.12 4.13 8.06 -2.91 -0.02 4.11 16 34 H 0.15 1.46 8.14 -2.39 -0.02 1.44 16 35 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 36 H 0.07 1.18 8.14 -2.39 -0.02 1.17 16 37 H 0.16 1.10 8.14 -2.39 -0.02 1.08 16 38 H 0.07 3.06 8.14 -2.39 -0.02 3.04 16 39 H 0.09 3.27 8.14 -2.39 -0.02 3.25 16 40 H 0.07 3.16 8.14 -2.38 -0.02 3.14 16 41 H 0.06 2.95 8.14 -2.39 -0.02 2.93 16 Total: -1.00 -67.34 345.67 1.57 -65.77 By element: Atomic # 1 Polarization: 22.28 SS G_CDS: 0.24 Total: 22.51 kcal Atomic # 6 Polarization: -39.56 SS G_CDS: 4.04 Total: -35.52 kcal Atomic # 7 Polarization: -79.05 SS G_CDS: -3.01 Total: -82.06 kcal Atomic # 8 Polarization: -16.49 SS G_CDS: -1.72 Total: -18.21 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 2.03 Total: 47.51 kcal Total: -67.34 1.57 -65.77 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430056329.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.379 kcal (2) G-P(sol) polarization free energy of solvation -67.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds