Wall clock time and date at job start Tue Mar 31 2020 05:55:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50701 * 120.00170 * 2 1 4 4 N 1.46899 * 109.47141 * 123.13660 * 3 2 1 5 5 C 1.46901 * 110.99928 * 64.60566 * 4 3 2 6 6 C 1.50707 * 109.46910 * 66.04451 * 5 4 3 7 7 H 1.07996 * 119.99982 * 0.02562 * 6 5 4 8 8 C 1.37879 * 119.99602 * 179.97438 * 6 5 4 9 9 N 1.31513 * 120.00218 * 0.02562 * 8 6 5 10 10 Si 1.86802 * 119.99714 * 180.02562 * 8 6 5 11 11 H 1.48498 * 109.47199 * 59.99924 * 10 8 6 12 12 H 1.48495 * 109.47213 * 180.02562 * 10 8 6 13 13 H 1.48503 * 109.46809 * 300.00060 * 10 8 6 14 14 C 1.46896 * 111.00077 * 300.65198 * 4 3 2 15 15 C 1.50703 * 109.47321 * 288.27918 * 14 4 3 16 16 C 1.34004 * 124.92497 * 91.24442 * 15 14 4 17 17 C 1.46779 * 106.18656 * 180.02562 * 16 15 14 18 18 C 1.39434 * 134.31071 * 179.35146 * 17 16 15 19 19 C 1.37916 * 119.58067 * 180.02562 * 18 17 16 20 20 F 1.35105 * 119.89121 * 179.97438 * 19 18 17 21 21 C 1.38955 * 120.22062 * 0.02562 * 19 18 17 22 22 C 1.37812 * 120.66822 * 359.97438 * 21 19 18 23 23 C 1.38912 * 119.99020 * 0.25677 * 22 21 19 24 24 O 1.34439 * 124.91907 * 270.65567 * 15 14 4 25 25 H 1.07999 * 119.99860 * 0.02562 * 1 2 3 26 26 H 1.07997 * 120.00229 * 180.02562 * 1 2 3 27 27 H 1.07999 * 119.99860 * 179.97438 * 2 1 3 28 28 H 1.09000 * 109.46793 * 3.13645 * 3 2 1 29 29 H 1.08999 * 109.46686 * 243.13573 * 3 2 1 30 30 H 1.09001 * 109.47019 * 186.04248 * 5 4 3 31 31 H 1.08999 * 109.47271 * 306.04714 * 5 4 3 32 32 H 0.97003 * 119.99776 * 179.97438 * 9 8 6 33 33 H 1.09001 * 109.47036 * 168.28052 * 14 4 3 34 34 H 1.08999 * 109.46957 * 48.28020 * 14 4 3 35 35 H 1.08003 * 126.90032 * 359.40999 * 16 15 14 36 36 H 1.07994 * 120.21420 * 0.02571 * 18 17 16 37 37 H 1.08000 * 119.66659 * 179.97438 * 21 19 18 38 38 H 1.07993 * 120.00190 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9640 1.3506 1.1597 5 6 4.0007 0.3144 1.0623 6 6 4.9044 0.6162 -0.1055 7 1 4.7266 1.4905 -0.7140 8 6 5.9587 -0.2235 -0.3962 9 7 6.1754 -1.2879 0.3451 10 14 7.0792 0.1510 -1.8432 11 1 7.7200 1.4756 -1.6432 12 1 8.1271 -0.8965 -1.9418 13 1 6.2808 0.1713 -3.0951 14 6 2.2119 1.2263 2.4154 15 6 1.4397 2.4959 2.6663 16 6 0.1826 2.7220 2.2612 17 6 -0.1586 4.0736 2.7207 18 6 -1.2884 4.8834 2.6112 19 6 -1.2808 6.1425 3.1739 20 9 -2.3719 6.9325 3.0711 21 6 -0.1542 6.6016 3.8454 22 6 0.9677 5.8094 3.9594 23 6 0.9816 4.5400 3.3954 24 8 1.9084 3.5616 3.3387 25 1 -0.5400 0.9353 -0.0004 26 1 -0.5400 -0.9353 0.0004 27 1 1.8500 -0.9353 0.0004 28 1 1.3565 2.1328 0.0562 29 1 2.6473 1.3875 -0.9168 30 1 4.5870 0.2994 1.9810 31 1 3.5301 -0.6578 0.9157 32 1 6.9170 -1.8787 0.1403 33 1 2.9053 1.0541 3.2387 34 1 1.5191 0.3880 2.3425 35 1 -0.4488 2.0491 1.6998 36 1 -2.1640 4.5269 2.0890 37 1 -0.1578 7.5892 4.2823 38 1 1.8375 6.1772 4.4833 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000430110194.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:57 Heat of formation + Delta-G solvation = 12.064990 kcal Electronic energy + Delta-G solvation = -22113.828213 eV Core-core repulsion = 18645.046603 eV Total energy + Delta-G solvation = -3468.781610 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.122 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -48.99086 -42.41666 -37.95149 -37.35610 -33.14062 -32.94040 -32.22498 -30.24411 -29.95878 -27.22874 -26.48098 -24.15434 -22.89978 -22.06180 -21.46553 -20.77048 -19.05499 -17.79264 -17.42294 -16.60515 -16.29101 -16.05514 -15.58954 -15.19281 -14.98315 -14.66740 -14.41874 -14.30699 -13.76404 -13.53336 -13.16182 -13.00593 -12.85167 -12.62420 -12.09239 -11.91128 -11.48086 -11.38752 -11.01920 -10.95460 -10.91584 -10.71089 -10.56370 -10.18394 -9.96517 -9.44083 -8.99796 -8.52738 -8.49498 -8.21551 -7.45661 -6.10051 -4.11622 0.71997 1.07786 2.35883 2.60609 2.74540 3.30095 3.34432 3.37523 3.43710 3.99664 4.34824 4.39312 4.56367 4.83661 4.93821 5.07392 5.14486 5.22263 5.26697 5.36599 5.47631 5.58466 5.69229 5.77439 5.86057 5.91805 5.92386 5.96138 6.12535 6.29729 6.40852 6.51418 6.58456 6.91246 6.97750 7.19378 7.21368 7.25572 7.67678 7.92009 8.02840 8.38379 8.94585 9.52762 11.00590 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.023709 B = 0.003574 C = 0.003373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.707534 B = 7831.456815 C = 8298.372242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.162 4.162 3 C 0.079 3.921 4 N -0.524 5.524 5 C 0.191 3.809 6 C -0.509 4.509 7 H 0.063 0.937 8 C 0.058 3.942 9 N -0.898 5.898 10 Si 0.898 3.102 11 H -0.276 1.276 12 H -0.288 1.288 13 H -0.277 1.277 14 C 0.113 3.887 15 C 0.090 3.910 16 C -0.225 4.225 17 C -0.096 4.096 18 C -0.112 4.112 19 C 0.078 3.922 20 F -0.141 7.141 21 C -0.136 4.136 22 C -0.072 4.072 23 C 0.040 3.960 24 O -0.179 6.179 25 H 0.091 0.909 26 H 0.090 0.910 27 H 0.114 0.886 28 H 0.063 0.937 29 H 0.096 0.904 30 H 0.033 0.967 31 H 0.002 0.998 32 H 0.263 0.737 33 H 0.092 0.908 34 H 0.071 0.929 35 H 0.159 0.841 36 H 0.138 0.862 37 H 0.144 0.856 38 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.932 9.678 5.964 17.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C -0.182 4.182 3 C -0.048 4.048 4 N -0.247 5.247 5 C 0.067 3.933 6 C -0.548 4.548 7 H 0.082 0.918 8 C -0.144 4.144 9 N -0.537 5.537 10 Si 0.726 3.274 11 H -0.201 1.201 12 H -0.213 1.213 13 H -0.202 1.202 14 C -0.015 4.015 15 C 0.041 3.959 16 C -0.245 4.245 17 C -0.097 4.097 18 C -0.131 4.131 19 C 0.059 3.941 20 F -0.120 7.120 21 C -0.155 4.155 22 C -0.091 4.091 23 C -0.008 4.008 24 O -0.080 6.080 25 H 0.109 0.891 26 H 0.108 0.892 27 H 0.132 0.868 28 H 0.081 0.919 29 H 0.114 0.886 30 H 0.051 0.949 31 H 0.020 0.980 32 H 0.072 0.928 33 H 0.110 0.890 34 H 0.089 0.911 35 H 0.176 0.824 36 H 0.155 0.845 37 H 0.162 0.838 38 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -13.294 10.030 6.108 17.738 hybrid contribution -0.080 -0.612 -0.910 1.099 sum -13.374 9.418 5.198 17.164 Atomic orbital electron populations 1.23742 0.95954 1.00942 1.04410 1.23910 0.96243 1.01457 0.96551 1.21408 0.94520 0.92662 0.96238 1.62376 1.11906 1.51950 0.98432 1.19836 0.87903 0.87245 0.98302 1.21065 1.11625 1.09505 1.12586 0.91840 1.24956 0.97550 0.94990 0.96891 1.69935 1.30633 1.14002 1.39144 0.86555 0.80246 0.78009 0.82601 1.20112 1.21336 1.20238 1.20757 0.96819 0.87696 0.96241 1.22701 0.92709 0.88347 0.92162 1.22239 0.97042 0.95888 1.09284 1.19684 0.94118 0.95226 1.00652 1.20353 0.98650 0.92358 1.01721 1.17337 0.84494 0.89744 1.02554 1.91489 1.52313 1.73419 1.94742 1.20779 0.91767 1.01059 1.01904 1.19721 0.99138 0.89502 1.00725 1.19649 0.88240 0.91345 1.01544 1.84073 1.39454 1.21950 1.62516 0.89118 0.89197 0.86806 0.91869 0.88578 0.94934 0.98048 0.92770 0.89004 0.91084 0.82362 0.84460 0.83800 0.84061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.88 13.92 29.01 0.40 -2.48 16 2 C -0.16 -2.66 7.39 -36.03 -0.27 -2.93 16 3 C 0.08 1.44 5.43 -4.98 -0.03 1.42 16 4 N -0.52 -10.55 4.65 -238.96 -1.11 -11.66 16 5 C 0.19 4.62 4.56 -4.97 -0.02 4.60 16 6 C -0.51 -13.62 8.45 -34.44 -0.29 -13.91 16 7 H 0.06 1.69 7.13 -52.49 -0.37 1.32 16 8 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 9 N -0.90 -25.66 13.29 55.43 0.74 -24.92 16 10 Si 0.90 21.09 29.54 -169.99 -5.02 16.07 16 11 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 12 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 13 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 14 C 0.11 1.91 5.33 -4.98 -0.03 1.88 16 15 C 0.09 1.43 6.29 -35.80 -0.22 1.21 16 16 C -0.22 -3.21 9.80 -37.62 -0.37 -3.57 16 17 C -0.10 -1.34 6.39 -105.16 -0.67 -2.01 16 18 C -0.11 -1.36 10.07 -39.25 -0.40 -1.76 16 19 C 0.08 0.91 7.29 -39.43 -0.29 0.62 16 20 F -0.14 -1.64 17.26 2.25 0.04 -1.61 16 21 C -0.14 -1.41 9.99 -39.47 -0.39 -1.81 16 22 C -0.07 -0.83 10.06 -39.49 -0.40 -1.23 16 23 C 0.04 0.58 7.41 -38.49 -0.29 0.30 16 24 O -0.18 -2.97 10.58 3.72 0.04 -2.93 16 25 H 0.09 1.11 6.64 -52.49 -0.35 0.76 16 26 H 0.09 1.10 8.06 -52.49 -0.42 0.68 16 27 H 0.11 2.09 6.84 -52.49 -0.36 1.73 16 28 H 0.06 1.05 6.25 -51.93 -0.32 0.73 16 29 H 0.10 1.93 6.74 -51.93 -0.35 1.58 16 30 H 0.03 0.85 7.86 -51.93 -0.41 0.44 16 31 H 0.00 0.04 6.38 -51.93 -0.33 -0.29 16 32 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 33 H 0.09 1.54 7.81 -51.93 -0.41 1.14 16 34 H 0.07 1.11 6.69 -51.93 -0.35 0.76 16 35 H 0.16 1.99 6.40 -52.48 -0.34 1.65 16 36 H 0.14 1.41 8.06 -52.49 -0.42 0.98 16 37 H 0.14 1.08 8.06 -52.49 -0.42 0.66 16 38 H 0.14 1.28 8.06 -52.49 -0.42 0.86 16 LS Contribution 323.77 15.07 4.88 4.88 Total: -1.00 -28.66 323.77 -8.20 -36.86 By element: Atomic # 1 Polarization: 5.91 SS G_CDS: -4.41 Total: 1.50 kcal Atomic # 6 Polarization: -14.83 SS G_CDS: -3.35 Total: -18.19 kcal Atomic # 7 Polarization: -36.21 SS G_CDS: -0.37 Total: -36.58 kcal Atomic # 8 Polarization: -2.97 SS G_CDS: 0.04 Total: -2.93 kcal Atomic # 9 Polarization: -1.64 SS G_CDS: 0.04 Total: -1.61 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -28.66 -8.20 -36.86 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430110194.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.925 kcal (2) G-P(sol) polarization free energy of solvation -28.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.860 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds