Wall clock time and date at job start Tue Mar 31 2020 06:41:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.39430 * 125.90004 * 2 1 4 4 C 1.38744 * 132.70180 * 359.96126 * 3 2 1 5 5 C 1.38308 * 119.88882 * 180.02562 * 4 3 2 6 6 F 1.35098 * 119.90068 * 180.02562 * 5 4 3 7 7 C 1.38596 * 120.19872 * 359.97438 * 5 4 3 8 8 C 1.38116 * 120.23008 * 0.27462 * 7 5 4 9 9 C 1.38726 * 119.93698 * 359.45676 * 8 7 5 10 10 N 1.39553 * 132.70620 * 180.16967 * 9 8 7 11 11 H 0.97008 * 125.91971 * 0.34080 * 10 9 8 12 12 C 1.37162 * 108.16179 * 180.33967 * 10 9 8 13 13 N 1.30645 * 125.60440 * 179.97438 * 12 10 9 14 14 C 1.46497 * 120.00482 * 354.61207 * 13 12 10 15 15 C 1.53001 * 109.47571 * 117.84690 * 14 13 12 16 16 C 1.50702 * 115.54891 * 155.40960 * 15 14 13 17 17 H 1.08001 * 119.99572 * 114.59480 * 16 15 14 18 18 C 1.37870 * 120.00071 * 294.58405 * 16 15 14 19 19 N 1.31521 * 120.00116 * 352.86362 * 18 16 15 20 20 Si 1.86804 * 120.00210 * 172.86014 * 18 16 15 21 21 H 1.48503 * 109.46890 * 0.02562 * 20 18 16 22 22 H 1.48490 * 109.47219 * 119.99946 * 20 18 16 23 23 H 1.48501 * 109.47082 * 240.00290 * 20 18 16 24 24 C 1.53001 * 117.49571 * 9.70045 * 15 14 13 25 25 C 1.53002 * 60.00149 * 252.51058 * 24 15 14 26 26 H 1.08997 * 109.47107 * 94.96252 * 1 2 3 27 27 H 1.08997 * 109.47212 * 214.97255 * 1 2 3 28 28 H 1.09004 * 109.46520 * 334.96311 * 1 2 3 29 29 H 1.07997 * 120.05844 * 0.02562 * 4 3 2 30 30 H 1.08002 * 119.87932 * 180.02562 * 7 5 4 31 31 H 1.08004 * 120.03361 * 179.72133 * 8 7 5 32 32 H 1.09002 * 109.47169 * 237.84917 * 14 13 12 33 33 H 1.09003 * 109.46709 * 357.84528 * 14 13 12 34 34 H 0.97003 * 120.00098 * 185.00787 * 19 18 16 35 35 H 1.09001 * 117.49949 * 359.97438 * 24 15 14 36 36 H 1.09004 * 117.49490 * 145.02037 * 24 15 14 37 37 H 1.08994 * 117.49949 * 252.51373 * 25 24 15 38 38 H 1.09002 * 117.51779 * 107.47963 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2826 1.1294 0.0000 4 6 2.0084 2.4895 -0.0007 5 6 3.0477 3.4021 -0.0010 6 9 2.7809 4.7265 -0.0012 7 6 4.3619 2.9620 -0.0001 8 6 4.6423 1.6096 -0.0046 9 6 3.6058 0.6876 0.0013 10 7 3.5802 -0.7077 0.0021 11 1 4.3552 -1.2911 0.0028 12 6 2.2693 -1.1112 0.0016 13 7 1.8549 -2.3502 0.0015 14 6 2.8203 -3.4456 -0.1171 15 6 2.7663 -4.3118 1.1429 16 6 3.2260 -5.7369 0.9721 17 1 4.1133 -6.0827 1.4816 18 6 2.5138 -6.5990 0.1657 19 7 1.3602 -6.2230 -0.3417 20 14 3.1874 -8.3012 -0.2063 21 1 4.4922 -8.4781 0.4803 22 1 2.2307 -9.3287 0.2776 23 1 3.3745 -8.4501 -1.6719 24 6 1.6291 -4.0496 2.1322 25 6 3.0586 -3.6308 2.4815 26 1 -0.3633 -0.0889 -1.0238 27 1 -0.3633 -0.8421 0.5890 28 1 -0.3632 0.9312 0.4349 29 1 0.9852 2.8351 -0.0010 30 1 5.1694 3.6792 0.0000 31 1 5.6677 1.2702 -0.0085 32 1 2.5742 -4.0542 -0.9873 33 1 3.8234 -3.0349 -0.2330 34 1 0.8248 -6.8533 -0.8487 35 1 0.9197 -3.2596 1.8856 36 1 1.2130 -4.9079 2.6598 37 1 3.5830 -4.2136 3.2387 38 1 3.2898 -2.5657 2.4643 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000431420093.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:06 Heat of formation + Delta-G solvation = 73.104463 kcal Electronic energy + Delta-G solvation = -22422.901576 eV Core-core repulsion = 18989.059587 eV Total energy + Delta-G solvation = -3433.841989 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.129 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -48.90939 -41.72004 -37.54872 -36.51660 -34.62398 -32.84670 -31.90333 -30.55686 -28.39515 -27.44970 -26.11464 -24.82021 -22.49489 -22.17896 -21.02199 -20.39802 -18.79301 -18.02898 -17.71949 -16.39589 -16.14346 -15.83031 -15.60696 -15.31367 -14.84009 -14.61137 -14.44179 -14.08312 -13.84493 -13.27905 -13.17429 -13.04052 -12.75060 -12.30698 -11.98770 -11.60878 -11.41472 -11.30429 -10.98229 -10.85416 -10.58289 -10.47398 -10.14149 -9.53726 -9.08645 -9.02365 -8.79109 -8.48666 -8.44569 -7.85334 -6.79992 -5.99479 -4.07084 1.02318 1.19911 2.50033 3.19444 3.27173 3.31837 3.36284 3.39749 3.48927 4.23666 4.39201 4.41059 4.83448 4.92339 5.05694 5.14537 5.25644 5.43061 5.43327 5.50085 5.52169 5.75652 5.86472 5.89305 6.05022 6.24184 6.27880 6.28130 6.53365 6.58981 6.75917 6.90409 7.01672 7.10731 7.23195 7.36450 7.55958 7.62019 7.76345 7.91410 8.45962 8.87126 8.92926 9.56080 11.06303 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.032991 B = 0.003628 C = 0.003496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.521225 B = 7715.817097 C = 8008.244688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.113 3.887 2 N -0.528 5.528 3 C 0.139 3.861 4 C -0.157 4.157 5 C 0.096 3.904 6 F -0.141 7.141 7 C -0.151 4.151 8 C -0.094 4.094 9 C 0.101 3.899 10 N -0.672 5.672 11 H 0.431 0.569 12 C 0.554 3.446 13 N -0.574 5.574 14 C 0.122 3.878 15 C 0.054 3.946 16 C -0.501 4.501 17 H 0.059 0.941 18 C 0.072 3.928 19 N -0.866 5.866 20 Si 0.887 3.113 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.283 1.283 24 C -0.155 4.155 25 C -0.217 4.217 26 H 0.063 0.937 27 H 0.089 0.911 28 H 0.073 0.927 29 H 0.136 0.864 30 H 0.139 0.861 31 H 0.136 0.864 32 H 0.094 0.906 33 H 0.006 0.994 34 H 0.259 0.741 35 H 0.076 0.924 36 H 0.069 0.931 37 H 0.071 0.929 38 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.523 18.076 -0.765 18.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.028 4.028 2 N -0.235 5.235 3 C 0.035 3.965 4 C -0.181 4.181 5 C 0.075 3.925 6 F -0.120 7.120 7 C -0.172 4.172 8 C -0.117 4.117 9 C -0.005 4.005 10 N -0.307 5.307 11 H 0.273 0.727 12 C 0.192 3.808 13 N -0.309 5.309 14 C -0.007 4.007 15 C 0.053 3.947 16 C -0.539 4.539 17 H 0.078 0.922 18 C -0.132 4.132 19 N -0.501 5.501 20 Si 0.715 3.285 21 H -0.197 1.197 22 H -0.210 1.210 23 H -0.209 1.209 24 C -0.193 4.193 25 C -0.254 4.254 26 H 0.082 0.918 27 H 0.108 0.892 28 H 0.092 0.908 29 H 0.154 0.846 30 H 0.156 0.844 31 H 0.153 0.847 32 H 0.111 0.889 33 H 0.024 0.976 34 H 0.069 0.931 35 H 0.095 0.905 36 H 0.088 0.912 37 H 0.090 0.910 38 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 1.369 17.314 -0.907 17.392 hybrid contribution 1.282 -0.865 -0.163 1.555 sum 2.651 16.449 -1.070 16.696 Atomic orbital electron populations 1.21637 0.74668 1.03545 1.02938 1.43548 1.05815 1.01281 1.72835 1.17653 0.88457 0.88290 1.02109 1.19698 0.99692 0.88981 1.09699 1.16954 0.93025 0.77112 1.05441 1.91479 1.94816 1.31375 1.94282 1.20657 0.95016 0.95573 1.05993 1.19834 0.97648 0.90600 1.03602 1.18196 0.93659 0.84760 1.03850 1.43180 1.08319 1.03977 1.75176 0.72660 1.19557 0.77569 0.88302 0.95421 1.72654 1.33953 0.93810 1.30441 1.21383 0.88818 0.89274 1.01224 1.18888 0.97985 0.93310 0.84553 1.20506 1.11454 0.93350 1.28560 0.92248 1.25012 0.94858 0.98092 0.95280 1.70059 1.10893 1.34512 1.34680 0.86617 0.79242 0.84501 0.78153 1.19748 1.21030 1.20914 1.22592 0.90091 1.00885 1.05721 1.22868 1.01974 0.97479 1.03128 0.91821 0.89195 0.90810 0.84568 0.84365 0.84662 0.88853 0.97604 0.93064 0.90532 0.91237 0.91025 0.92645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.38 11.02 59.85 0.66 2.04 16 2 N -0.53 -7.96 3.26 -122.58 -0.40 -8.36 16 3 C 0.14 1.88 6.81 -83.74 -0.57 1.30 16 4 C -0.16 -1.77 9.91 -39.37 -0.39 -2.16 16 5 C 0.10 1.05 7.29 -39.42 -0.29 0.76 16 6 F -0.14 -1.56 17.26 2.25 0.04 -1.52 16 7 C -0.15 -1.47 10.01 -39.49 -0.40 -1.87 16 8 C -0.09 -0.98 10.07 -39.45 -0.40 -1.37 16 9 C 0.10 1.34 7.22 -83.69 -0.60 0.74 16 10 N -0.67 -10.27 5.99 -11.25 -0.07 -10.34 16 11 H 0.43 6.18 7.30 -40.82 -0.30 5.88 16 12 C 0.55 9.90 8.39 -320.61 -2.69 7.21 16 13 N -0.57 -12.24 8.69 -61.88 -0.54 -12.78 16 14 C 0.12 2.85 6.37 -4.04 -0.03 2.83 16 15 C 0.05 1.35 1.87 -155.66 -0.29 1.06 16 16 C -0.50 -13.75 8.82 -34.44 -0.30 -14.05 16 17 H 0.06 1.63 7.82 -52.49 -0.41 1.22 16 18 C 0.07 1.97 5.23 -17.82 -0.09 1.87 16 19 N -0.87 -24.67 12.58 55.43 0.70 -23.97 16 20 Si 0.89 20.93 29.55 -169.99 -5.02 15.91 16 21 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 22 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 23 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 24 C -0.16 -3.84 9.56 -26.73 -0.26 -4.09 16 25 C -0.22 -4.97 9.86 -26.73 -0.26 -5.23 16 26 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 28 H 0.07 0.67 7.96 -51.93 -0.41 0.25 16 29 H 0.14 1.28 7.96 -52.49 -0.42 0.86 16 30 H 0.14 1.01 8.06 -52.49 -0.42 0.59 16 31 H 0.14 1.09 8.06 -52.48 -0.42 0.67 16 32 H 0.09 2.47 7.25 -51.93 -0.38 2.09 16 33 H 0.01 0.12 6.10 -51.93 -0.32 -0.20 16 34 H 0.26 7.06 8.32 -40.82 -0.34 6.72 16 35 H 0.08 1.88 6.96 -51.93 -0.36 1.52 16 36 H 0.07 1.80 8.14 -51.93 -0.42 1.38 16 37 H 0.07 1.61 8.14 -51.93 -0.42 1.19 16 38 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 LS Contribution 327.59 15.07 4.94 4.94 Total: -1.00 -30.57 327.59 -10.95 -41.52 By element: Atomic # 1 Polarization: 10.25 SS G_CDS: -4.69 Total: 5.56 kcal Atomic # 6 Polarization: -5.05 SS G_CDS: -5.91 Total: -10.96 kcal Atomic # 7 Polarization: -55.14 SS G_CDS: -0.31 Total: -55.44 kcal Atomic # 9 Polarization: -1.56 SS G_CDS: 0.04 Total: -1.52 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -30.57 -10.95 -41.52 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431420093.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.621 kcal (2) G-P(sol) polarization free energy of solvation -30.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.516 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds