Wall clock time and date at job start Tue Mar 31 2020 06:41:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.39430 * 125.90004 * 2 1 4 4 C 1.38744 * 132.70180 * 359.96126 * 3 2 1 5 5 C 1.38308 * 119.88882 * 180.02562 * 4 3 2 6 6 F 1.35098 * 119.90068 * 180.02562 * 5 4 3 7 7 C 1.38596 * 120.19872 * 359.97438 * 5 4 3 8 8 C 1.38116 * 120.23008 * 0.27462 * 7 5 4 9 9 C 1.38726 * 119.93698 * 359.45676 * 8 7 5 10 10 N 1.39553 * 132.70620 * 180.16967 * 9 8 7 11 11 H 0.97008 * 125.91971 * 0.34080 * 10 9 8 12 12 C 1.37162 * 108.16179 * 180.33967 * 10 9 8 13 13 N 1.30645 * 125.60440 * 179.97438 * 12 10 9 14 14 C 1.46497 * 120.00482 * 354.61207 * 13 12 10 15 15 C 1.53001 * 109.47571 * 117.84690 * 14 13 12 16 16 C 1.50702 * 115.54891 * 155.40960 * 15 14 13 17 17 H 1.08001 * 119.99572 * 114.59480 * 16 15 14 18 18 C 1.37870 * 120.00071 * 294.58405 * 16 15 14 19 19 N 1.31521 * 120.00116 * 352.86362 * 18 16 15 20 20 Si 1.86804 * 120.00210 * 172.86014 * 18 16 15 21 21 H 1.48503 * 109.46890 * 0.02562 * 20 18 16 22 22 H 1.48490 * 109.47219 * 119.99946 * 20 18 16 23 23 H 1.48501 * 109.47082 * 240.00290 * 20 18 16 24 24 C 1.53001 * 117.49571 * 9.70045 * 15 14 13 25 25 C 1.53002 * 60.00149 * 252.51058 * 24 15 14 26 26 H 1.08997 * 109.47107 * 94.96252 * 1 2 3 27 27 H 1.08997 * 109.47212 * 214.97255 * 1 2 3 28 28 H 1.09004 * 109.46520 * 334.96311 * 1 2 3 29 29 H 1.07997 * 120.05844 * 0.02562 * 4 3 2 30 30 H 1.08002 * 119.87932 * 180.02562 * 7 5 4 31 31 H 1.08004 * 120.03361 * 179.72133 * 8 7 5 32 32 H 1.09002 * 109.47169 * 237.84917 * 14 13 12 33 33 H 1.09003 * 109.46709 * 357.84528 * 14 13 12 34 34 H 0.97003 * 120.00098 * 185.00787 * 19 18 16 35 35 H 1.09001 * 117.49949 * 359.97438 * 24 15 14 36 36 H 1.09004 * 117.49490 * 145.02037 * 24 15 14 37 37 H 1.08994 * 117.49949 * 252.51373 * 25 24 15 38 38 H 1.09002 * 117.51779 * 107.47963 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2826 1.1294 0.0000 4 6 2.0084 2.4895 -0.0007 5 6 3.0477 3.4021 -0.0010 6 9 2.7809 4.7265 -0.0012 7 6 4.3619 2.9620 -0.0001 8 6 4.6423 1.6096 -0.0046 9 6 3.6058 0.6876 0.0013 10 7 3.5802 -0.7077 0.0021 11 1 4.3552 -1.2911 0.0028 12 6 2.2693 -1.1112 0.0016 13 7 1.8549 -2.3502 0.0015 14 6 2.8203 -3.4456 -0.1171 15 6 2.7663 -4.3118 1.1429 16 6 3.2260 -5.7369 0.9721 17 1 4.1133 -6.0827 1.4816 18 6 2.5138 -6.5990 0.1657 19 7 1.3602 -6.2230 -0.3417 20 14 3.1874 -8.3012 -0.2063 21 1 4.4922 -8.4781 0.4803 22 1 2.2307 -9.3287 0.2776 23 1 3.3745 -8.4501 -1.6719 24 6 1.6291 -4.0496 2.1322 25 6 3.0586 -3.6308 2.4815 26 1 -0.3633 -0.0889 -1.0238 27 1 -0.3633 -0.8421 0.5890 28 1 -0.3632 0.9312 0.4349 29 1 0.9852 2.8351 -0.0010 30 1 5.1694 3.6792 0.0000 31 1 5.6677 1.2702 -0.0085 32 1 2.5742 -4.0542 -0.9873 33 1 3.8234 -3.0349 -0.2330 34 1 0.8248 -6.8533 -0.8487 35 1 0.9197 -3.2596 1.8856 36 1 1.2130 -4.9079 2.6598 37 1 3.5830 -4.2136 3.2387 38 1 3.2898 -2.5657 2.4643 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000431420093.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:05 Heat of formation + Delta-G solvation = 58.239950 kcal Electronic energy + Delta-G solvation = -22423.546150 eV Core-core repulsion = 18989.059587 eV Total energy + Delta-G solvation = -3434.486562 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.129 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.77914 -42.82697 -38.96388 -37.93567 -35.77778 -34.37784 -33.85162 -31.47079 -29.51258 -28.64912 -27.88084 -26.50569 -23.47671 -23.23166 -22.89487 -21.74440 -20.55689 -19.07829 -18.76942 -18.07514 -17.37876 -16.99418 -16.64862 -16.59637 -16.31390 -15.91088 -15.77501 -15.56405 -15.05858 -14.76551 -14.20350 -14.08245 -13.93490 -13.66763 -13.49331 -13.15756 -12.97706 -12.83479 -12.60901 -12.33625 -12.14627 -12.03523 -11.61432 -11.36477 -10.98026 -10.56188 -10.44169 -10.24475 -9.68196 -9.40414 -8.07509 -8.06553 -6.20994 0.12452 0.28377 1.36455 1.40809 1.42920 1.54066 1.84700 2.19476 2.42893 2.59156 3.14205 3.34224 3.48783 3.53573 3.89446 4.00745 4.09684 4.22956 4.36464 4.39097 4.52799 4.55100 4.55909 4.65184 4.78800 4.87669 4.89265 5.04345 5.05789 5.15881 5.18783 5.29599 5.38622 5.62073 5.65926 5.70525 5.84312 5.97777 6.08535 6.38627 6.53682 6.85182 7.43708 7.48746 8.98906 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.032991 B = 0.003628 C = 0.003496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.521225 B = 7715.817097 C = 8008.244688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.109 3.891 2 N -0.530 5.530 3 C 0.116 3.884 4 C -0.149 4.149 5 C 0.095 3.905 6 F -0.140 7.140 7 C -0.138 4.138 8 C -0.081 4.081 9 C 0.076 3.924 10 N -0.671 5.671 11 H 0.433 0.567 12 C 0.563 3.437 13 N -0.625 5.625 14 C 0.141 3.859 15 C 0.031 3.969 16 C -0.521 4.521 17 H 0.054 0.946 18 C 0.027 3.973 19 N -0.896 5.896 20 Si 0.953 3.047 21 H -0.266 1.266 22 H -0.282 1.282 23 H -0.279 1.279 24 C -0.159 4.159 25 C -0.188 4.188 26 H 0.069 0.931 27 H 0.070 0.930 28 H 0.108 0.892 29 H 0.155 0.845 30 H 0.170 0.830 31 H 0.162 0.838 32 H 0.049 0.951 33 H 0.020 0.980 34 H 0.259 0.741 35 H 0.075 0.925 36 H 0.048 0.952 37 H 0.075 0.925 38 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.009 20.538 -0.661 20.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.032 4.032 2 N -0.237 5.237 3 C 0.013 3.987 4 C -0.173 4.173 5 C 0.073 3.927 6 F -0.118 7.118 7 C -0.159 4.159 8 C -0.104 4.104 9 C -0.028 4.028 10 N -0.305 5.305 11 H 0.275 0.725 12 C 0.200 3.800 13 N -0.364 5.364 14 C 0.011 3.989 15 C 0.030 3.970 16 C -0.559 4.559 17 H 0.072 0.928 18 C -0.175 4.175 19 N -0.533 5.533 20 Si 0.778 3.222 21 H -0.190 1.190 22 H -0.208 1.208 23 H -0.205 1.205 24 C -0.197 4.197 25 C -0.226 4.226 26 H 0.087 0.913 27 H 0.089 0.911 28 H 0.127 0.873 29 H 0.172 0.828 30 H 0.187 0.813 31 H 0.180 0.820 32 H 0.068 0.932 33 H 0.038 0.962 34 H 0.068 0.932 35 H 0.093 0.907 36 H 0.066 0.934 37 H 0.093 0.907 38 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 2.884 19.874 -0.796 20.098 hybrid contribution 0.870 -1.315 -0.188 1.588 sum 3.754 18.559 -0.984 18.960 Atomic orbital electron populations 1.21806 0.73489 1.04551 1.03308 1.43769 1.06639 1.01019 1.72262 1.17874 0.88278 0.88602 1.03969 1.19888 1.01003 0.88046 1.08333 1.17123 0.93498 0.77067 1.04993 1.91494 1.94863 1.31266 1.94216 1.21038 0.95440 0.95746 1.03635 1.20187 0.98271 0.90308 1.01594 1.18542 0.94687 0.83903 1.05637 1.43130 1.07458 1.05210 1.74690 0.72466 1.19702 0.78937 0.88302 0.93030 1.72564 1.33388 0.94600 1.35836 1.20848 0.89995 0.89714 0.98314 1.19062 0.98388 0.93275 0.86283 1.20814 1.11353 0.94965 1.28775 0.92798 1.25728 0.94964 1.01791 0.95000 1.70195 1.12045 1.35695 1.35342 0.85596 0.78689 0.79919 0.77965 1.19033 1.20825 1.20473 1.22406 0.90888 1.00225 1.06195 1.22775 1.00005 0.98138 1.01634 0.91273 0.91145 0.87343 0.82762 0.81259 0.82011 0.93233 0.96203 0.93204 0.90686 0.93357 0.90688 0.91068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.59 11.02 127.77 1.41 4.00 16 2 N -0.53 -15.59 3.26 -541.73 -1.76 -17.36 16 3 C 0.12 2.88 6.81 38.36 0.26 3.14 16 4 C -0.15 -2.93 9.91 22.41 0.22 -2.71 16 5 C 0.09 1.71 7.29 22.37 0.16 1.87 16 6 F -0.14 -2.59 17.26 44.97 0.78 -1.81 16 7 C -0.14 -2.08 10.01 22.33 0.22 -1.85 16 8 C -0.08 -1.40 10.07 22.36 0.23 -1.17 16 9 C 0.08 1.87 7.22 38.33 0.28 2.14 16 10 N -0.67 -19.93 5.99 -189.50 -1.14 -21.06 16 11 H 0.43 12.11 7.30 -92.70 -0.68 11.43 16 12 C 0.56 20.18 8.39 260.72 2.19 22.36 16 13 N -0.63 -27.52 8.69 -349.69 -3.04 -30.56 16 14 C 0.14 6.85 6.37 86.38 0.55 7.40 16 15 C 0.03 1.61 1.87 -52.92 -0.10 1.51 16 16 C -0.52 -29.33 8.82 25.60 0.23 -29.10 16 17 H 0.05 3.00 7.82 -2.91 -0.02 2.98 16 18 C 0.03 1.49 5.23 84.65 0.44 1.93 16 19 N -0.90 -52.90 12.58 21.45 0.27 -52.63 16 20 Si 0.95 43.81 29.55 68.60 2.03 45.84 16 21 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 22 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 23 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 24 C -0.16 -8.13 9.56 30.60 0.29 -7.84 16 25 C -0.19 -8.64 9.86 30.60 0.30 -8.33 16 26 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 27 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 28 H 0.11 1.75 7.96 -2.39 -0.02 1.73 16 29 H 0.15 2.39 7.96 -2.91 -0.02 2.36 16 30 H 0.17 1.55 8.06 -2.91 -0.02 1.52 16 31 H 0.16 1.92 8.06 -2.91 -0.02 1.89 16 32 H 0.05 2.77 7.25 -2.39 -0.02 2.75 16 33 H 0.02 0.86 6.10 -2.39 -0.01 0.84 16 34 H 0.26 14.55 8.32 -92.71 -0.77 13.78 16 35 H 0.07 3.83 6.96 -2.39 -0.02 3.81 16 36 H 0.05 2.60 8.14 -2.39 -0.02 2.59 16 37 H 0.07 3.35 8.14 -2.39 -0.02 3.33 16 38 H 0.07 3.01 8.14 -2.39 -0.02 2.99 16 Total: -1.00 -68.01 327.59 4.23 -63.77 By element: Atomic # 1 Polarization: 20.02 SS G_CDS: 0.42 Total: 20.43 kcal Atomic # 6 Polarization: -13.32 SS G_CDS: 6.68 Total: -6.64 kcal Atomic # 7 Polarization: -115.93 SS G_CDS: -5.67 Total: -121.60 kcal Atomic # 9 Polarization: -2.59 SS G_CDS: 0.78 Total: -1.81 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.84 kcal Total: -68.01 4.23 -63.77 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431420093.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.014 kcal (2) G-P(sol) polarization free energy of solvation -68.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.774 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds