Wall clock time and date at job start Tue Mar 31 2020 05:46:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50697 * 109.47580 * 2 1 4 4 C 1.39261 * 119.78408 * 124.99918 * 3 2 1 5 5 C 1.38149 * 119.01480 * 180.28011 * 4 3 2 6 6 N 1.37721 * 120.64422 * 179.69980 * 5 4 3 7 7 C 1.47477 * 110.99895 * 132.32608 * 6 5 4 8 8 C 1.53520 * 87.93046 * 221.30020 * 7 6 5 9 9 O 1.42898 * 114.16560 * 272.37536 * 8 7 6 10 10 C 1.50703 * 114.16900 * 139.67618 * 8 7 6 11 11 H 1.08001 * 119.99552 * 266.15166 * 10 8 7 12 12 C 1.37874 * 120.00366 * 86.15711 * 10 8 7 13 13 N 1.31521 * 120.00027 * 359.97438 * 12 10 8 14 14 Si 1.86802 * 120.00206 * 179.97438 * 12 10 8 15 15 H 1.48501 * 109.46763 * 89.99721 * 14 12 10 16 16 H 1.48489 * 109.47223 * 209.99957 * 14 12 10 17 17 H 1.48500 * 109.46941 * 330.00469 * 14 12 10 18 18 C 1.47483 * 110.99633 * 36.35706 * 6 5 4 19 19 N 1.36507 * 118.71343 * 359.45452 * 5 4 3 20 20 N 1.40071 * 133.37654 * 180.21430 * 19 5 4 21 21 C 1.31064 * 107.03873 * 180.28436 * 20 19 5 22 22 N 1.32737 * 109.62897 * 0.02562 * 21 20 19 23 23 C 1.32858 * 109.73925 * 359.97438 * 22 21 20 24 24 N 1.31649 * 119.78195 * 304.98245 * 3 2 1 25 25 H 1.08997 * 109.46799 * 59.99499 * 1 2 3 26 26 H 1.09000 * 109.47075 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.46872 * 300.00084 * 1 2 3 28 28 H 1.09002 * 109.47087 * 240.00308 * 2 1 3 29 29 H 1.09004 * 109.47080 * 120.00700 * 2 1 3 30 30 H 1.08003 * 120.48722 * 0.02562 * 4 3 2 31 31 H 1.09000 * 113.48222 * 336.06245 * 7 6 5 32 32 H 1.08999 * 113.47901 * 106.53693 * 7 6 5 33 33 H 0.96705 * 114.00492 * 273.83736 * 9 8 7 34 34 H 0.96995 * 119.99844 * 179.97438 * 13 12 10 35 35 H 1.09001 * 113.47297 * 253.46702 * 18 6 5 36 36 H 1.08993 * 113.48214 * 23.93569 * 18 6 5 37 37 H 1.08004 * 125.19086 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.9167 1.8418 0.9901 5 6 3.3626 3.1493 0.9783 6 7 4.2326 3.6030 1.9448 7 6 5.3564 4.3415 1.3395 8 6 6.2847 3.6377 2.3394 9 8 6.4161 4.3138 3.5914 10 6 7.6030 3.2000 1.7548 11 1 7.7168 2.1971 1.3705 12 6 8.6637 4.0796 1.7105 13 7 8.5249 5.3011 2.1781 14 14 10.2979 3.5367 0.9865 15 1 10.3159 3.8296 -0.4692 16 1 11.4029 4.2713 1.6530 17 1 10.4735 2.0777 1.2001 18 6 5.1981 2.5536 2.3213 19 7 2.9283 3.9814 -0.0128 20 7 3.1774 5.3255 -0.3184 21 6 2.4817 5.6105 -1.3921 22 7 1.8088 4.5362 -1.7856 23 6 2.0602 3.5232 -0.9636 24 7 1.6329 2.2556 -0.9362 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5140 0.8900 30 1 3.2456 1.1574 1.7581 31 1 5.5479 4.0673 0.3021 32 1 5.2971 5.4199 1.4870 33 1 7.1014 4.9961 3.6001 34 1 9.2713 5.9198 2.1473 35 1 5.0043 2.1167 3.3010 36 1 5.3472 1.8022 1.5460 37 1 2.4588 6.5730 -1.8815 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000444830784.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:04 Heat of formation + Delta-G solvation = 129.636259 kcal Electronic energy + Delta-G solvation = -23179.297711 eV Core-core repulsion = 19767.827086 eV Total energy + Delta-G solvation = -3411.470624 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.128 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.74430 -40.32255 -38.53578 -35.40715 -33.85056 -32.93919 -32.30244 -30.70759 -30.01350 -28.10671 -25.77541 -25.57518 -24.17994 -23.53053 -21.70573 -20.96557 -19.24743 -18.26452 -17.72542 -17.55866 -16.43440 -16.04442 -15.32882 -15.06339 -14.81879 -14.45484 -14.22902 -14.01224 -13.88477 -13.25053 -12.82755 -12.76263 -12.46318 -12.39207 -11.84367 -11.72459 -11.66692 -11.39591 -11.23194 -11.15022 -11.12439 -10.60302 -10.37962 -10.05545 -9.89890 -9.68659 -9.51071 -9.27097 -8.89913 -8.45644 -7.97724 -6.50937 -4.62678 0.64857 0.94936 2.00038 2.75970 3.07667 3.16127 3.18299 3.42538 3.56016 3.91472 4.09623 4.19123 4.62297 4.71765 4.82077 4.95922 5.10501 5.18498 5.21884 5.34274 5.47891 5.53947 5.56910 5.70986 5.81865 5.88992 5.97852 6.12158 6.13383 6.29114 6.32780 6.47053 6.65370 6.73554 6.94578 7.25662 7.51427 7.63979 7.71384 8.15482 8.39927 9.08862 9.35772 10.55984 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.018890 B = 0.005017 C = 0.004561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1481.934738 B = 5580.073063 C = 6137.986689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.072 4.072 3 C 0.251 3.749 4 C -0.287 4.287 5 C 0.392 3.608 6 N -0.429 5.429 7 C 0.005 3.995 8 C 0.254 3.746 9 O -0.567 6.567 10 C -0.542 4.542 11 H 0.072 0.928 12 C 0.075 3.925 13 N -0.893 5.893 14 Si 0.909 3.091 15 H -0.277 1.277 16 H -0.281 1.281 17 H -0.269 1.269 18 C 0.016 3.984 19 N -0.340 5.340 20 N -0.327 5.327 21 C 0.243 3.757 22 N -0.543 5.543 23 C 0.466 3.534 24 N -0.494 5.494 25 H 0.069 0.931 26 H 0.062 0.938 27 H 0.054 0.946 28 H 0.094 0.906 29 H 0.090 0.910 30 H 0.169 0.831 31 H 0.071 0.929 32 H 0.090 0.910 33 H 0.396 0.604 34 H 0.276 0.724 35 H 0.094 0.906 36 H 0.090 0.910 37 H 0.228 0.772 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.049 -7.400 -2.670 11.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.110 4.110 3 C 0.091 3.909 4 C -0.317 4.317 5 C 0.172 3.828 6 N -0.143 5.143 7 C -0.121 4.121 8 C 0.212 3.788 9 O -0.380 6.380 10 C -0.580 4.580 11 H 0.090 0.910 12 C -0.129 4.129 13 N -0.532 5.532 14 Si 0.736 3.264 15 H -0.202 1.202 16 H -0.206 1.206 17 H -0.194 1.194 18 C -0.109 4.109 19 N -0.123 5.123 20 N -0.156 5.156 21 C -0.059 4.059 22 N -0.277 5.277 23 C 0.105 3.895 24 N -0.214 5.214 25 H 0.088 0.912 26 H 0.081 0.919 27 H 0.073 0.927 28 H 0.112 0.888 29 H 0.109 0.891 30 H 0.186 0.814 31 H 0.089 0.911 32 H 0.108 0.892 33 H 0.253 0.747 34 H 0.086 0.914 35 H 0.112 0.888 36 H 0.108 0.892 37 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -10.141 -6.697 -2.658 12.441 hybrid contribution 1.962 0.286 -0.426 2.028 sum -8.180 -6.411 -3.084 10.841 Atomic orbital electron populations 1.21694 0.93427 1.02075 1.03088 1.20593 0.97448 0.88715 1.04263 1.21603 0.87196 0.95686 0.86431 1.21630 1.09764 0.93234 1.07067 1.20606 0.93130 0.86944 0.82082 1.65255 1.10235 1.16541 1.22258 1.24994 0.86171 1.01264 0.99639 1.19340 0.90818 0.86489 0.82152 1.86031 1.62808 1.56604 1.32533 1.21423 0.95540 0.99875 1.41138 0.90973 1.25085 0.99591 0.94349 0.93854 1.69263 1.33103 1.05274 1.45596 0.86300 0.81822 0.79112 0.79181 1.20249 1.20637 1.19385 1.24508 0.89555 0.94841 1.02046 1.48883 1.32937 1.10332 1.20140 1.78622 1.27775 0.88801 1.20433 1.26248 0.90018 0.98550 0.91080 1.70896 1.30629 0.98095 1.28118 1.22805 0.88006 0.92576 0.86100 1.67699 1.28220 0.98448 1.27076 0.91241 0.91858 0.92690 0.88788 0.89140 0.81380 0.91062 0.89202 0.74720 0.91359 0.88771 0.89203 0.75594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.28 9.77 37.16 0.36 -0.91 16 2 C -0.07 -0.67 6.34 -27.88 -0.18 -0.84 16 3 C 0.25 3.48 6.21 -82.29 -0.51 2.97 16 4 C -0.29 -4.21 8.42 -39.23 -0.33 -4.54 16 5 C 0.39 7.27 6.15 -152.98 -0.94 6.33 16 6 N -0.43 -8.66 6.49 -182.19 -1.18 -9.84 16 7 C 0.00 0.11 5.69 -7.54 -0.04 0.06 16 8 C 0.25 5.92 1.57 -91.24 -0.14 5.78 16 9 O -0.57 -14.17 13.54 -35.23 -0.48 -14.65 16 10 C -0.54 -13.31 8.69 -34.44 -0.30 -13.61 16 11 H 0.07 1.71 7.81 -52.49 -0.41 1.30 16 12 C 0.07 1.85 5.40 -17.82 -0.10 1.75 16 13 N -0.89 -22.62 11.02 55.43 0.61 -22.00 16 14 Si 0.91 19.26 29.54 -169.99 -5.02 14.24 16 15 H -0.28 -5.91 7.11 56.52 0.40 -5.50 16 16 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 17 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 18 C 0.02 0.31 5.89 -7.55 -0.04 0.27 16 19 N -0.34 -6.70 3.69 -12.98 -0.05 -6.74 16 20 N -0.33 -6.41 11.55 29.26 0.34 -6.07 16 21 C 0.24 4.06 12.98 -91.96 -1.19 2.87 16 22 N -0.54 -10.18 11.26 -15.66 -0.18 -10.36 16 23 C 0.47 8.94 9.00 -323.15 -2.91 6.03 16 24 N -0.49 -8.40 10.00 -10.18 -0.10 -8.51 16 25 H 0.07 0.72 7.95 -51.93 -0.41 0.31 16 26 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.09 0.62 7.90 -51.93 -0.41 0.21 16 30 H 0.17 1.96 7.06 -52.48 -0.37 1.59 16 31 H 0.07 1.66 7.79 -51.93 -0.40 1.26 16 32 H 0.09 2.19 8.14 -51.93 -0.42 1.77 16 33 H 0.40 10.17 6.34 45.56 0.29 10.46 16 34 H 0.28 6.64 8.31 -40.82 -0.34 6.30 16 35 H 0.09 1.65 8.14 -51.93 -0.42 1.23 16 36 H 0.09 1.54 7.21 -51.93 -0.37 1.16 16 37 H 0.23 2.59 8.06 -52.48 -0.42 2.16 16 LS Contribution 313.63 15.07 4.73 4.73 Total: -1.00 -29.73 313.63 -11.42 -41.15 By element: Atomic # 1 Polarization: 15.69 SS G_CDS: -3.77 Total: 11.92 kcal Atomic # 6 Polarization: 12.47 SS G_CDS: -6.32 Total: 6.14 kcal Atomic # 7 Polarization: -62.97 SS G_CDS: -0.56 Total: -63.53 kcal Atomic # 8 Polarization: -14.17 SS G_CDS: -0.48 Total: -14.65 kcal Atomic # 14 Polarization: 19.26 SS G_CDS: -5.02 Total: 14.24 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -29.73 -11.42 -41.15 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000444830784.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.787 kcal (2) G-P(sol) polarization free energy of solvation -29.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 141.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.150 kcal (6) G-S(sol) free energy of system = (1) + (5) 129.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds