Wall clock time and date at job start Tue Mar 31 2020 05:46:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50697 * 109.47580 * 2 1 4 4 C 1.39261 * 119.78408 * 124.99918 * 3 2 1 5 5 C 1.38149 * 119.01480 * 180.28011 * 4 3 2 6 6 N 1.37721 * 120.64422 * 179.69980 * 5 4 3 7 7 C 1.47477 * 110.99895 * 132.32608 * 6 5 4 8 8 C 1.53520 * 87.93046 * 221.30020 * 7 6 5 9 9 O 1.42898 * 114.16560 * 272.37536 * 8 7 6 10 10 C 1.50703 * 114.16900 * 139.67618 * 8 7 6 11 11 H 1.08001 * 119.99552 * 266.15166 * 10 8 7 12 12 C 1.37874 * 120.00366 * 86.15711 * 10 8 7 13 13 N 1.31521 * 120.00027 * 359.97438 * 12 10 8 14 14 Si 1.86802 * 120.00206 * 179.97438 * 12 10 8 15 15 H 1.48501 * 109.46763 * 89.99721 * 14 12 10 16 16 H 1.48489 * 109.47223 * 209.99957 * 14 12 10 17 17 H 1.48500 * 109.46941 * 330.00469 * 14 12 10 18 18 C 1.47483 * 110.99633 * 36.35706 * 6 5 4 19 19 N 1.36507 * 118.71343 * 359.45452 * 5 4 3 20 20 N 1.40071 * 133.37654 * 180.21430 * 19 5 4 21 21 C 1.31064 * 107.03873 * 180.28436 * 20 19 5 22 22 N 1.32737 * 109.62897 * 0.02562 * 21 20 19 23 23 C 1.32858 * 109.73925 * 359.97438 * 22 21 20 24 24 N 1.31649 * 119.78195 * 304.98245 * 3 2 1 25 25 H 1.08997 * 109.46799 * 59.99499 * 1 2 3 26 26 H 1.09000 * 109.47075 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.46872 * 300.00084 * 1 2 3 28 28 H 1.09002 * 109.47087 * 240.00308 * 2 1 3 29 29 H 1.09004 * 109.47080 * 120.00700 * 2 1 3 30 30 H 1.08003 * 120.48722 * 0.02562 * 4 3 2 31 31 H 1.09000 * 113.48222 * 336.06245 * 7 6 5 32 32 H 1.08999 * 113.47901 * 106.53693 * 7 6 5 33 33 H 0.96705 * 114.00492 * 273.83736 * 9 8 7 34 34 H 0.96995 * 119.99844 * 179.97438 * 13 12 10 35 35 H 1.09001 * 113.47297 * 253.46702 * 18 6 5 36 36 H 1.08993 * 113.48214 * 23.93569 * 18 6 5 37 37 H 1.08004 * 125.19086 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.9167 1.8418 0.9901 5 6 3.3626 3.1493 0.9783 6 7 4.2326 3.6030 1.9448 7 6 5.3564 4.3415 1.3395 8 6 6.2847 3.6377 2.3394 9 8 6.4161 4.3138 3.5914 10 6 7.6030 3.2000 1.7548 11 1 7.7168 2.1971 1.3705 12 6 8.6637 4.0796 1.7105 13 7 8.5249 5.3011 2.1781 14 14 10.2979 3.5367 0.9865 15 1 10.3159 3.8296 -0.4692 16 1 11.4029 4.2713 1.6530 17 1 10.4735 2.0777 1.2001 18 6 5.1981 2.5536 2.3213 19 7 2.9283 3.9814 -0.0128 20 7 3.1774 5.3255 -0.3184 21 6 2.4817 5.6105 -1.3921 22 7 1.8088 4.5362 -1.7856 23 6 2.0602 3.5232 -0.9636 24 7 1.6329 2.2556 -0.9362 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5140 0.8900 30 1 3.2456 1.1574 1.7581 31 1 5.5479 4.0673 0.3021 32 1 5.2971 5.4199 1.4870 33 1 7.1014 4.9961 3.6001 34 1 9.2713 5.9198 2.1473 35 1 5.0043 2.1167 3.3010 36 1 5.3472 1.8022 1.5460 37 1 2.4588 6.5730 -1.8815 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000444830784.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:03 Heat of formation + Delta-G solvation = 110.641859 kcal Electronic energy + Delta-G solvation = -23180.121370 eV Core-core repulsion = 19767.827086 eV Total energy + Delta-G solvation = -3412.294283 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.128 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -44.10170 -41.86405 -39.81511 -37.03167 -35.17495 -34.22229 -34.10390 -32.07499 -31.22383 -29.71317 -27.31975 -27.12700 -25.43064 -24.90296 -22.79608 -22.36238 -20.94212 -19.80227 -19.13720 -19.01096 -17.82859 -17.54625 -17.16797 -16.46357 -16.23162 -15.74746 -15.48600 -15.36510 -14.90999 -14.60845 -14.36271 -14.20081 -13.91379 -13.79637 -13.49427 -12.96052 -12.88319 -12.81569 -12.78914 -12.41536 -12.29913 -12.22012 -11.92897 -11.56147 -11.32703 -11.14986 -10.92252 -10.76440 -10.63024 -10.27423 -9.40322 -8.35597 -6.54063 -0.65325 -0.33864 0.68103 1.40393 1.43442 1.45832 1.53207 2.18064 2.26369 2.32059 2.54427 2.84983 2.98855 3.36412 3.58151 3.71063 3.80145 3.95254 3.95980 4.14559 4.19767 4.40179 4.42440 4.55925 4.60577 4.75183 4.86993 4.88689 5.02482 5.11773 5.14687 5.18549 5.25022 5.32339 5.49971 5.64262 5.71903 5.78998 6.41663 6.52888 6.81580 7.20100 7.38921 8.70547 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.018890 B = 0.005017 C = 0.004561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1481.934738 B = 5580.073063 C = 6137.986689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.070 4.070 3 C 0.256 3.744 4 C -0.259 4.259 5 C 0.353 3.647 6 N -0.437 5.437 7 C 0.022 3.978 8 C 0.228 3.772 9 O -0.577 6.577 10 C -0.557 4.557 11 H 0.079 0.921 12 C 0.029 3.971 13 N -0.918 5.918 14 Si 0.969 3.031 15 H -0.280 1.280 16 H -0.280 1.280 17 H -0.260 1.260 18 C 0.032 3.968 19 N -0.350 5.350 20 N -0.369 5.369 21 C 0.250 3.750 22 N -0.564 5.564 23 C 0.447 3.553 24 N -0.505 5.505 25 H 0.047 0.953 26 H 0.091 0.909 27 H 0.049 0.951 28 H 0.110 0.890 29 H 0.127 0.873 30 H 0.206 0.794 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.388 0.612 34 H 0.277 0.723 35 H 0.114 0.886 36 H 0.111 0.889 37 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.576 -10.298 -2.827 14.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.107 4.107 3 C 0.096 3.904 4 C -0.288 4.288 5 C 0.135 3.865 6 N -0.151 5.151 7 C -0.104 4.104 8 C 0.186 3.814 9 O -0.389 6.389 10 C -0.595 4.595 11 H 0.097 0.903 12 C -0.172 4.172 13 N -0.559 5.559 14 Si 0.794 3.206 15 H -0.205 1.205 16 H -0.206 1.206 17 H -0.184 1.184 18 C -0.093 4.093 19 N -0.133 5.133 20 N -0.199 5.199 21 C -0.051 4.051 22 N -0.299 5.299 23 C 0.087 3.913 24 N -0.225 5.225 25 H 0.066 0.934 26 H 0.110 0.890 27 H 0.068 0.932 28 H 0.128 0.872 29 H 0.145 0.855 30 H 0.223 0.777 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.244 0.756 34 H 0.086 0.914 35 H 0.132 0.868 36 H 0.129 0.871 37 H 0.285 0.715 Dipole moment (debyes) X Y Z Total from point charges -10.696 -9.629 -2.808 14.663 hybrid contribution 2.004 1.103 -0.428 2.327 sum -8.692 -8.526 -3.236 12.598 Atomic orbital electron populations 1.21690 0.93099 1.03524 1.01790 1.20886 0.97532 0.85524 1.06801 1.22505 0.85833 0.97232 0.84819 1.22220 1.07675 0.91838 1.07025 1.20957 0.94464 0.88364 0.82726 1.65248 1.09995 1.16742 1.23144 1.24528 0.87958 0.99342 0.98614 1.19667 0.91737 0.88286 0.81664 1.86013 1.62542 1.56579 1.33799 1.21757 0.96381 1.00219 1.41153 0.90258 1.25847 1.02663 0.94383 0.94262 1.69355 1.33860 1.06127 1.46522 0.85369 0.78127 0.79080 0.78018 1.20539 1.20563 1.18379 1.24437 0.87223 0.93864 1.03774 1.48942 1.33267 1.10389 1.20664 1.78551 1.29610 0.89632 1.22118 1.27070 0.88352 0.99538 0.90106 1.70893 1.31522 0.98710 1.28763 1.23223 0.88336 0.93475 0.86293 1.67852 1.28529 0.97874 1.28271 0.93372 0.89044 0.93218 0.87168 0.85518 0.77666 0.92669 0.92513 0.75615 0.91358 0.86755 0.87084 0.71516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.02 9.77 71.98 0.70 -1.32 16 2 C -0.07 -0.97 6.34 29.85 0.19 -0.78 16 3 C 0.26 6.33 6.21 42.83 0.27 6.59 16 4 C -0.26 -6.80 8.42 22.49 0.19 -6.61 16 5 C 0.35 12.75 6.15 131.99 0.81 13.56 16 6 N -0.44 -17.50 6.49 -730.72 -4.74 -22.24 16 7 C 0.02 1.04 5.69 83.58 0.48 1.51 16 8 C 0.23 10.69 1.57 -11.19 -0.02 10.68 16 9 O -0.58 -29.46 13.54 -148.98 -2.02 -31.48 16 10 C -0.56 -27.32 8.69 25.60 0.22 -27.10 16 11 H 0.08 3.66 7.81 -2.91 -0.02 3.64 16 12 C 0.03 1.44 5.40 84.65 0.46 1.90 16 13 N -0.92 -47.62 11.02 21.45 0.24 -47.39 16 14 Si 0.97 39.34 29.54 68.60 2.03 41.37 16 15 H -0.28 -11.38 7.11 99.48 0.71 -10.67 16 16 H -0.28 -11.24 7.11 99.48 0.71 -10.53 16 17 H -0.26 -10.05 7.11 99.48 0.71 -9.34 16 18 C 0.03 1.18 5.89 83.57 0.49 1.67 16 19 N -0.35 -13.87 3.69 -194.98 -0.72 -14.59 16 20 N -0.37 -14.88 11.55 -61.35 -0.71 -15.59 16 21 C 0.25 8.43 12.98 180.82 2.35 10.78 16 22 N -0.56 -21.20 11.26 -203.46 -2.29 -23.49 16 23 C 0.45 17.07 9.00 261.60 2.35 19.42 16 24 N -0.50 -16.46 10.00 -186.12 -1.86 -18.32 16 25 H 0.05 0.89 7.95 -2.39 -0.02 0.87 16 26 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 27 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 28 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 29 H 0.13 0.92 7.90 -2.38 -0.02 0.91 16 30 H 0.21 3.72 7.06 -2.91 -0.02 3.70 16 31 H 0.05 2.67 7.79 -2.39 -0.02 2.65 16 32 H 0.06 2.94 8.14 -2.39 -0.02 2.92 16 33 H 0.39 20.69 6.34 -74.05 -0.47 20.22 16 34 H 0.28 13.60 8.31 -92.71 -0.77 12.83 16 35 H 0.11 3.68 8.14 -2.39 -0.02 3.66 16 36 H 0.11 3.48 7.21 -2.39 -0.02 3.47 16 37 H 0.27 5.92 8.06 -2.91 -0.02 5.90 16 Total: -1.00 -67.43 313.63 -0.94 -68.38 By element: Atomic # 1 Polarization: 32.39 SS G_CDS: 0.64 Total: 33.04 kcal Atomic # 6 Polarization: 21.82 SS G_CDS: 8.49 Total: 30.31 kcal Atomic # 7 Polarization: -131.52 SS G_CDS: -10.09 Total: -141.61 kcal Atomic # 8 Polarization: -29.46 SS G_CDS: -2.02 Total: -31.48 kcal Atomic # 14 Polarization: 39.34 SS G_CDS: 2.03 Total: 41.37 kcal Total: -67.43 -0.94 -68.38 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000444830784.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 179.020 kcal (2) G-P(sol) polarization free energy of solvation -67.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.378 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds