Wall clock time and date at job start Tue Mar 31 2020 05:51:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.46800 * 2 1 4 4 C 1.50701 * 109.47145 * 240.00569 * 2 1 3 5 5 H 1.08009 * 119.99651 * 241.34574 * 4 2 1 6 6 C 1.37868 * 120.00338 * 61.34033 * 4 2 1 7 7 N 1.31521 * 120.00453 * 193.97821 * 6 4 2 8 8 Si 1.86801 * 120.00217 * 13.98060 * 6 4 2 9 9 H 1.48505 * 109.47124 * 84.54309 * 8 6 4 10 10 H 1.48497 * 109.47512 * 204.54782 * 8 6 4 11 11 H 1.48505 * 109.46983 * 324.55043 * 8 6 4 12 12 C 1.52998 * 109.47584 * 119.99837 * 2 1 3 13 13 N 1.46496 * 109.47329 * 300.00315 * 12 2 1 14 14 C 1.34773 * 120.00133 * 180.26769 * 13 12 2 15 15 O 1.21560 * 119.99890 * 359.73139 * 14 13 12 16 16 C 1.47724 * 119.99923 * 179.72241 * 14 13 12 17 17 C 1.40121 * 120.35384 * 0.02562 * 16 14 13 18 18 N 1.31254 * 121.15108 * 179.97438 * 17 16 14 19 19 C 1.32719 * 121.80403 * 0.02562 * 18 17 16 20 20 N 1.37116 * 133.41201 * 179.97438 * 19 18 17 21 21 H 0.96998 * 126.58123 * 0.02562 * 20 19 18 22 22 N 1.40187 * 106.82118 * 180.02562 * 20 19 18 23 23 N 1.28658 * 109.51172 * 359.97438 * 22 20 19 24 24 C 1.35333 * 109.99998 * 0.02562 * 23 22 20 25 25 C 1.39432 * 120.35075 * 179.72975 * 16 14 13 26 26 H 1.08998 * 109.47272 * 309.36723 * 1 2 3 27 27 H 1.08992 * 109.47141 * 69.36784 * 1 2 3 28 28 H 1.09004 * 109.46813 * 189.36595 * 1 2 3 29 29 H 1.09008 * 109.47129 * 180.02562 * 3 2 1 30 30 H 1.08998 * 109.47398 * 300.00135 * 3 2 1 31 31 H 1.08999 * 109.47102 * 60.00497 * 3 2 1 32 32 H 0.96991 * 120.00307 * 180.02562 * 7 6 4 33 33 H 1.08999 * 109.47488 * 180.02562 * 12 2 1 34 34 H 1.09007 * 109.46656 * 60.00290 * 12 2 1 35 35 H 0.97008 * 119.99791 * 359.97438 * 13 12 2 36 36 H 1.08000 * 119.42362 * 0.02562 * 17 16 14 37 37 H 1.08002 * 120.94873 * 359.97438 * 25 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6353 -1.6010 -1.1316 6 6 1.7223 -0.2233 -2.4825 7 7 1.9157 -0.9724 -3.5461 8 14 1.0275 1.5007 -2.6684 9 1 2.1416 2.4818 -2.7083 10 1 0.2468 1.5866 -3.9287 11 1 0.1417 1.8043 -1.5158 12 6 2.0401 -0.7212 1.2492 13 7 1.5518 -0.0307 2.4454 14 6 1.8820 -0.4879 3.6694 15 8 2.5809 -1.4762 3.7809 16 6 1.3946 0.2120 4.8756 17 6 0.5882 1.3517 4.7557 18 7 0.1462 1.9853 5.8167 19 6 0.4399 1.5806 7.0461 20 7 0.1173 2.0477 8.2942 21 1 -0.4295 2.8224 8.4980 22 7 0.7298 1.1903 9.2190 23 7 1.3752 0.2714 8.5910 24 6 1.2446 0.4444 7.2552 25 6 1.7270 -0.2580 6.1455 26 1 -0.3634 0.6518 0.7945 27 1 -0.3633 0.3621 -0.9617 28 1 -0.3633 -1.0140 0.1672 29 1 3.1300 1.4426 -0.0005 30 1 1.6766 1.9564 -0.8899 31 1 1.6767 1.9563 0.8900 32 1 1.6979 -0.6297 -4.4269 33 1 3.1301 -0.7208 1.2494 34 1 1.6768 -1.7489 1.2492 35 1 0.9943 0.7582 2.3564 36 1 0.3252 1.7145 3.7730 37 1 2.3425 -1.1368 6.2690 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457990294.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:21 Heat of formation + Delta-G solvation = 104.860557 kcal Electronic energy + Delta-G solvation = -22259.820224 eV Core-core repulsion = 18847.275244 eV Total energy + Delta-G solvation = -3412.544979 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.128 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.76037 -40.09051 -38.47473 -36.84017 -34.37611 -33.60614 -32.08242 -31.73016 -30.83639 -26.62458 -26.41880 -25.20543 -25.02442 -24.03829 -23.07225 -20.96129 -19.42103 -19.08481 -18.64209 -17.15219 -16.83005 -16.51426 -16.14903 -15.38938 -15.09438 -14.98621 -14.30885 -13.75047 -13.62903 -13.60492 -13.16301 -12.99164 -12.92133 -12.70451 -12.34565 -12.29082 -12.11951 -11.92406 -11.40227 -10.55431 -10.47352 -10.26996 -10.24574 -10.14233 -9.75632 -9.75033 -9.45087 -9.20136 -8.75805 -8.71630 -8.51723 -6.19920 -4.17996 -0.20344 0.27487 1.58192 1.65670 2.63368 3.09822 3.19278 3.26045 3.35024 3.44410 3.51216 3.84585 3.88177 4.24604 4.30317 4.32996 4.73821 4.92121 5.10418 5.31308 5.45735 5.65236 5.73953 5.95726 5.96612 6.23073 6.25804 6.37607 6.41839 6.53398 6.58937 6.61316 6.85436 7.04429 7.13063 7.34196 7.34633 7.64401 7.66738 8.27656 8.39850 8.85295 9.43463 10.93094 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.036907 B = 0.003426 C = 0.003209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.472796 B = 8169.854565 C = 8722.368197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.028 3.972 3 C -0.149 4.149 4 C -0.515 4.515 5 H 0.077 0.923 6 C 0.076 3.924 7 N -0.890 5.890 8 Si 0.885 3.115 9 H -0.285 1.285 10 H -0.305 1.305 11 H -0.249 1.249 12 C 0.141 3.859 13 N -0.713 5.713 14 C 0.560 3.440 15 O -0.534 6.534 16 C -0.199 4.199 17 C 0.214 3.786 18 N -0.489 5.489 19 C 0.292 3.708 20 N -0.484 5.484 21 H 0.454 0.546 22 N 0.016 4.984 23 N -0.191 5.191 24 C -0.074 4.074 25 C 0.082 3.918 26 H 0.021 0.979 27 H 0.057 0.943 28 H 0.048 0.952 29 H 0.055 0.945 30 H 0.042 0.958 31 H 0.029 0.971 32 H 0.265 0.735 33 H 0.067 0.933 34 H 0.068 0.932 35 H 0.395 0.605 36 H 0.180 0.820 37 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.959 7.929 18.895 21.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.027 3.973 3 C -0.206 4.206 4 C -0.553 4.553 5 H 0.096 0.904 6 C -0.127 4.127 7 N -0.526 5.526 8 Si 0.717 3.283 9 H -0.213 1.213 10 H -0.234 1.234 11 H -0.175 1.175 12 C 0.019 3.981 13 N -0.364 5.364 14 C 0.345 3.655 15 O -0.412 6.412 16 C -0.208 4.208 17 C 0.040 3.960 18 N -0.203 5.203 19 C 0.047 3.953 20 N -0.209 5.209 21 H 0.302 0.698 22 N 0.033 4.967 23 N -0.072 5.072 24 C -0.200 4.200 25 C 0.051 3.949 26 H 0.040 0.960 27 H 0.076 0.924 28 H 0.068 0.932 29 H 0.074 0.926 30 H 0.061 0.939 31 H 0.048 0.952 32 H 0.075 0.925 33 H 0.086 0.914 34 H 0.087 0.913 35 H 0.231 0.769 36 H 0.196 0.804 37 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -4.734 7.574 20.228 22.112 hybrid contribution -0.682 1.515 -1.118 2.002 sum -5.415 9.089 19.110 21.843 Atomic orbital electron populations 1.22318 0.97768 0.99951 1.00075 1.18737 0.92568 0.92288 0.93722 1.22385 1.01368 0.98250 0.98622 1.20694 1.34244 1.12420 0.87917 0.90447 1.24972 0.94637 0.97290 0.95786 1.69945 1.47983 1.35921 0.98772 0.87307 0.79353 0.85525 0.76087 1.21317 1.23377 1.17464 1.21628 0.98938 0.95977 0.81524 1.46243 1.52399 1.31776 1.05955 1.17668 0.80942 0.84194 0.82734 1.90807 1.38001 1.25874 1.86524 1.20956 1.04963 0.99990 0.94937 1.23143 0.87902 0.88431 0.96480 1.66700 1.25483 1.32622 0.95460 1.19599 0.95105 0.92663 0.87939 1.47523 1.43929 1.27573 1.01914 0.69810 1.81731 1.05803 0.97036 1.12104 1.74895 1.13214 1.15296 1.03799 1.20413 1.07016 1.00060 0.92478 1.21113 0.90395 0.95936 0.87488 0.95976 0.92408 0.93239 0.92623 0.93927 0.95234 0.92486 0.91450 0.91333 0.76886 0.80359 0.81484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.67 7.53 37.16 0.28 -2.39 16 2 C 0.03 0.56 0.50 -155.66 -0.08 0.48 16 3 C -0.15 -2.76 7.52 37.16 0.28 -2.48 16 4 C -0.51 -13.13 8.62 -34.44 -0.30 -13.43 16 5 H 0.08 2.18 7.99 -52.48 -0.42 1.76 16 6 C 0.08 2.03 5.32 -17.82 -0.09 1.94 16 7 N -0.89 -25.84 13.96 55.43 0.77 -25.07 16 8 Si 0.88 20.14 22.79 -169.99 -3.87 16.27 16 9 H -0.29 -6.50 7.10 56.52 0.40 -6.10 16 10 H -0.31 -7.19 7.11 56.52 0.40 -6.79 16 11 H -0.25 -5.05 4.65 56.52 0.26 -4.78 16 12 C 0.14 2.53 4.49 -4.04 -0.02 2.52 16 13 N -0.71 -9.99 4.96 -61.29 -0.30 -10.29 16 14 C 0.56 7.92 7.77 -12.39 -0.10 7.83 16 15 O -0.53 -9.48 16.39 5.31 0.09 -9.39 16 16 C -0.20 -2.23 5.88 -104.87 -0.62 -2.84 16 17 C 0.21 2.03 10.69 -17.09 -0.18 1.84 16 18 N -0.49 -5.00 10.37 -12.03 -0.12 -5.13 16 19 C 0.29 3.07 8.49 -155.93 -1.32 1.74 16 20 N -0.48 -4.10 7.52 31.15 0.23 -3.86 16 21 H 0.45 2.20 8.96 -182.53 -1.64 0.56 16 22 N 0.02 0.17 13.82 60.35 0.83 1.01 16 23 N -0.19 -2.27 12.40 32.17 0.40 -1.87 16 24 C -0.07 -0.85 7.27 -84.73 -0.62 -1.47 16 25 C 0.08 0.91 9.75 -38.51 -0.38 0.53 16 26 H 0.02 0.32 7.13 -51.93 -0.37 -0.05 16 27 H 0.06 1.17 4.30 -51.93 -0.22 0.94 16 28 H 0.05 0.91 8.12 -51.93 -0.42 0.49 16 29 H 0.05 1.03 8.14 -51.92 -0.42 0.61 16 30 H 0.04 0.85 2.25 -51.93 -0.12 0.73 16 31 H 0.03 0.43 6.86 -51.93 -0.36 0.07 16 32 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 33 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 34 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 35 H 0.40 4.52 4.29 -40.82 -0.18 4.35 16 36 H 0.18 1.22 6.39 -52.49 -0.34 0.88 16 37 H 0.17 1.75 7.71 -52.49 -0.40 1.35 16 LS Contribution 301.67 15.07 4.55 4.55 Total: -1.00 -31.23 301.67 -5.57 -36.80 By element: Atomic # 1 Polarization: 7.72 SS G_CDS: -5.00 Total: 2.72 kcal Atomic # 6 Polarization: -2.59 SS G_CDS: -3.14 Total: -5.73 kcal Atomic # 7 Polarization: -47.02 SS G_CDS: 1.81 Total: -45.21 kcal Atomic # 8 Polarization: -9.48 SS G_CDS: 0.09 Total: -9.39 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -3.87 Total: 16.27 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -31.23 -5.57 -36.80 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457990294.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.660 kcal (2) G-P(sol) polarization free energy of solvation -31.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.800 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds