Wall clock time and date at job start Tue Mar 31 2020 05:51:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47397 * 2 1 4 4 C 1.50703 * 109.47248 * 239.99464 * 2 1 3 5 5 H 1.07995 * 120.00107 * 240.00273 * 4 2 1 6 6 C 1.37878 * 119.99714 * 60.00009 * 4 2 1 7 7 N 1.31510 * 119.99944 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 119.99765 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47110 * 90.00207 * 8 6 4 10 10 H 1.48501 * 109.47137 * 210.00199 * 8 6 4 11 11 H 1.48496 * 109.47323 * 330.00240 * 8 6 4 12 12 C 1.53004 * 109.46923 * 119.99895 * 2 1 3 13 13 N 1.46901 * 109.46916 * 299.99733 * 12 2 1 14 14 C 1.46905 * 110.99870 * 180.02562 * 13 12 2 15 15 C 1.50697 * 109.47066 * 180.02562 * 14 13 12 16 16 C 1.31824 * 122.55565 * 259.71139 * 15 14 13 17 17 S 1.75297 * 111.40230 * 179.85935 * 16 15 14 18 18 C 1.75904 * 92.19567 * 0.34580 * 17 16 15 19 19 C 1.39849 * 130.56699 * 179.81079 * 18 17 16 20 20 C 1.37465 * 120.18018 * 179.97438 * 19 18 17 21 21 C 1.38854 * 120.18681 * 0.02562 * 20 19 18 22 22 C 1.36085 * 120.59144 * 0.02562 * 21 20 19 23 23 C 1.39746 * 109.67761 * 359.80931 * 18 17 16 24 24 H 1.09002 * 109.47301 * 300.00132 * 1 2 3 25 25 H 1.09001 * 109.47017 * 60.00685 * 1 2 3 26 26 H 1.09005 * 109.47249 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46999 * 179.97438 * 3 2 1 28 28 H 1.09001 * 109.46478 * 299.99645 * 3 2 1 29 29 H 1.08993 * 109.47197 * 59.99666 * 3 2 1 30 30 H 0.97007 * 120.00038 * 179.97438 * 7 6 4 31 31 H 1.09004 * 109.46889 * 180.02562 * 12 2 1 32 32 H 1.08995 * 109.47384 * 59.99754 * 12 2 1 33 33 H 1.00901 * 111.00067 * 303.95263 * 13 12 2 34 34 H 1.09001 * 109.46798 * 300.00327 * 14 13 12 35 35 H 1.08998 * 109.46961 * 60.00043 * 14 13 12 36 36 H 1.07998 * 124.29640 * 0.02562 * 16 15 14 37 37 H 1.08003 * 119.91032 * 0.02665 * 19 18 17 38 38 H 1.07994 * 119.90687 * 180.02562 * 20 19 18 39 39 H 1.08001 * 119.70100 * 179.97438 * 21 20 19 40 40 H 1.08001 * 119.77744 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1312 6 6 1.6993 -0.2395 -2.4827 7 7 0.9436 0.8300 -2.6034 8 14 2.3225 -1.1198 -4.0078 9 1 1.3449 -2.1619 -4.4122 10 1 2.4874 -0.1406 -5.1120 11 1 3.6309 -1.7569 -3.7118 12 6 2.0399 -0.7213 1.2493 13 7 1.5503 -0.0286 2.4487 14 6 2.0218 -0.6944 3.6704 15 6 1.5001 0.0422 4.8771 16 6 2.2386 0.8911 5.5640 17 16 1.3418 1.5816 6.9026 18 6 -0.0995 0.6559 6.5027 19 6 -1.3542 0.6149 7.1191 20 6 -2.3434 -0.1984 6.6193 21 6 -2.1023 -0.9840 5.5001 22 6 -0.8883 -0.9601 4.8856 23 6 0.1459 -0.1337 5.3761 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5137 -0.8901 26 1 -0.3634 -1.0277 0.0005 27 1 3.1301 1.4424 0.0005 28 1 1.6767 1.9562 -0.8901 29 1 1.6767 1.9563 0.8899 30 1 0.7095 1.1616 -3.4845 31 1 3.1300 -0.7209 1.2495 32 1 1.6766 -1.7489 1.2494 33 1 1.8198 0.9437 2.4401 34 1 1.6586 -1.7220 3.6874 35 1 3.1116 -0.6939 3.6870 36 1 3.2649 1.1326 5.3300 37 1 -1.5467 1.2244 7.9896 38 1 -3.3108 -0.2263 7.0985 39 1 -2.8850 -1.6204 5.1143 40 1 -0.7150 -1.5769 4.0161 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459694858.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:11 Heat of formation + Delta-G solvation = 36.928489 kcal Electronic energy + Delta-G solvation = -20282.620252 eV Core-core repulsion = 17381.129981 eV Total energy + Delta-G solvation = -2901.490272 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 289.120 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.62761 -37.17642 -35.68602 -33.29782 -31.14183 -30.69906 -29.32123 -26.23051 -25.55609 -25.18279 -23.39511 -22.84573 -22.32698 -19.50493 -18.45570 -18.09400 -16.07549 -15.71397 -15.45129 -15.15698 -14.90371 -14.47414 -14.27723 -13.79660 -13.50460 -13.41693 -12.79557 -12.46654 -12.39414 -12.15955 -11.95471 -11.50342 -11.23746 -11.15482 -11.01528 -10.95086 -10.64796 -10.60681 -10.55435 -10.17572 -10.05733 -9.59066 -9.38288 -9.08689 -8.62542 -8.52495 -8.28839 -7.78723 -7.62657 -5.90804 -4.01398 0.74602 1.25520 1.53496 1.97531 2.26272 3.31382 3.38429 3.41052 3.73699 4.44283 4.59353 4.72637 4.89670 4.98009 5.19506 5.23383 5.34672 5.41683 5.54369 5.63825 5.68532 5.87044 6.01711 6.12832 6.29537 6.32402 6.37667 6.45701 6.58563 6.71687 6.86763 6.89072 7.08038 7.16965 7.39326 7.46799 7.70608 7.76295 7.83083 7.94330 8.21266 8.35094 8.55924 9.00051 9.63648 11.09630 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.026382 B = 0.003585 C = 0.003366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.066411 B = 7808.908935 C = 8316.896487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.069 3.931 3 C -0.132 4.132 4 C -0.507 4.507 5 H 0.052 0.948 6 C 0.066 3.934 7 N -0.884 5.884 8 Si 0.888 3.112 9 H -0.282 1.282 10 H -0.288 1.288 11 H -0.276 1.276 12 C 0.075 3.925 13 N -0.679 5.679 14 C 0.112 3.888 15 C -0.066 4.066 16 C -0.196 4.196 17 S 0.065 5.935 18 C -0.139 4.139 19 C -0.092 4.092 20 C -0.104 4.104 21 C -0.125 4.125 22 C -0.059 4.059 23 C -0.055 4.055 24 H 0.020 0.980 25 H 0.073 0.927 26 H 0.017 0.983 27 H 0.018 0.982 28 H 0.083 0.917 29 H 0.010 0.990 30 H 0.258 0.742 31 H 0.014 0.986 32 H 0.057 0.943 33 H 0.339 0.661 34 H 0.078 0.922 35 H 0.034 0.966 36 H 0.165 0.835 37 H 0.123 0.877 38 H 0.127 0.873 39 H 0.127 0.873 40 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.451 -0.551 18.860 19.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.068 3.932 3 C -0.190 4.190 4 C -0.546 4.546 5 H 0.070 0.930 6 C -0.135 4.135 7 N -0.523 5.523 8 Si 0.716 3.284 9 H -0.208 1.208 10 H -0.213 1.213 11 H -0.201 1.201 12 C -0.053 4.053 13 N -0.311 5.311 14 C -0.020 4.020 15 C -0.078 4.078 16 C -0.330 4.330 17 S 0.329 5.671 18 C -0.254 4.254 19 C -0.114 4.114 20 C -0.125 4.125 21 C -0.145 4.145 22 C -0.078 4.078 23 C -0.063 4.063 24 H 0.039 0.961 25 H 0.092 0.908 26 H 0.037 0.963 27 H 0.037 0.963 28 H 0.102 0.898 29 H 0.029 0.971 30 H 0.068 0.932 31 H 0.032 0.968 32 H 0.075 0.925 33 H 0.158 0.842 34 H 0.096 0.904 35 H 0.052 0.948 36 H 0.182 0.818 37 H 0.141 0.859 38 H 0.145 0.855 39 H 0.145 0.855 40 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -2.672 0.316 19.819 20.000 hybrid contribution 1.033 -1.136 -1.975 2.501 sum -1.640 -0.820 17.844 17.938 Atomic orbital electron populations 1.21632 0.97352 0.98518 1.00102 1.18091 0.93236 0.91952 0.89871 1.21829 0.97644 0.99199 1.00306 1.21103 1.31140 1.11857 0.90477 0.93013 1.24881 0.95034 0.94948 0.98676 1.69837 1.36813 1.22737 1.22897 0.86666 0.79181 0.79457 0.83059 1.20791 1.21343 1.20123 1.22187 0.95550 0.97853 0.89699 1.60634 1.63551 1.06467 1.00458 1.20625 0.96376 0.97675 0.87300 1.19784 0.92019 0.98422 0.97583 1.24845 1.04129 1.03417 1.00641 1.83938 1.03122 1.47623 1.32416 1.22674 0.98829 1.02982 1.00877 1.20393 0.90807 1.00212 1.00020 1.21020 0.98570 0.96297 0.96614 1.20728 0.97212 1.00202 0.96376 1.20839 0.91567 0.96818 0.98623 1.19090 0.93994 0.98422 0.94800 0.96089 0.90795 0.96344 0.96265 0.89830 0.97066 0.93197 0.96811 0.92452 0.84159 0.90354 0.94795 0.81803 0.85938 0.85540 0.85544 0.84971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.88 8.09 37.16 0.30 -2.58 16 2 C 0.07 1.66 0.57 -155.66 -0.09 1.57 16 3 C -0.13 -3.12 7.92 37.16 0.29 -2.83 16 4 C -0.51 -13.56 8.01 -34.44 -0.28 -13.84 16 5 H 0.05 1.38 7.74 -52.49 -0.41 0.98 16 6 C 0.07 1.77 5.15 -17.82 -0.09 1.68 16 7 N -0.88 -24.46 9.35 55.43 0.52 -23.94 16 8 Si 0.89 21.04 29.54 -169.99 -5.02 16.02 16 9 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 10 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 12 C 0.08 1.54 4.59 -3.82 -0.02 1.52 16 13 N -0.68 -11.98 5.70 -115.05 -0.66 -12.64 16 14 C 0.11 1.65 5.82 -4.97 -0.03 1.62 16 15 C -0.07 -0.93 5.48 -103.68 -0.57 -1.50 16 16 C -0.20 -2.47 10.72 28.84 0.31 -2.16 16 17 S 0.06 0.77 23.23 -107.50 -2.50 -1.73 16 18 C -0.14 -1.83 6.48 -38.42 -0.25 -2.08 16 19 C -0.09 -1.04 10.07 -39.26 -0.40 -1.43 16 20 C -0.10 -1.09 10.03 -39.64 -0.40 -1.48 16 21 C -0.12 -1.42 9.95 -40.13 -0.40 -1.82 16 22 C -0.06 -0.79 9.82 -39.24 -0.39 -1.18 16 23 C -0.06 -0.79 6.01 -105.37 -0.63 -1.42 16 24 H 0.02 0.47 7.60 -51.93 -0.39 0.07 16 25 H 0.07 1.98 6.07 -51.93 -0.32 1.66 16 26 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.08 2.20 6.07 -51.93 -0.32 1.88 16 29 H 0.01 0.23 6.57 -51.93 -0.34 -0.11 16 30 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 31 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 33 H 0.34 6.10 6.76 -39.29 -0.27 5.84 16 34 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 35 H 0.03 0.47 8.06 -51.93 -0.42 0.05 16 36 H 0.16 1.75 8.06 -52.49 -0.42 1.32 16 37 H 0.12 1.11 8.06 -52.48 -0.42 0.68 16 38 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 39 H 0.13 1.16 8.06 -52.49 -0.42 0.73 16 40 H 0.13 1.79 8.06 -52.49 -0.42 1.37 16 LS Contribution 336.06 15.07 5.06 5.06 Total: -1.00 -27.97 336.06 -11.04 -39.01 By element: Atomic # 1 Polarization: 9.96 SS G_CDS: -5.82 Total: 4.14 kcal Atomic # 6 Polarization: -23.30 SS G_CDS: -2.63 Total: -25.93 kcal Atomic # 7 Polarization: -36.44 SS G_CDS: -0.14 Total: -36.58 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Atomic # 16 Polarization: 0.77 SS G_CDS: -2.50 Total: -1.73 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -27.97 -11.04 -39.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459694858.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.937 kcal (2) G-P(sol) polarization free energy of solvation -27.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.009 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds