Wall clock time and date at job start Tue Mar 31 2020 05:51:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47397 * 2 1 4 4 C 1.50703 * 109.47248 * 239.99464 * 2 1 3 5 5 H 1.07995 * 120.00107 * 240.00273 * 4 2 1 6 6 C 1.37878 * 119.99714 * 60.00009 * 4 2 1 7 7 N 1.31510 * 119.99944 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 119.99765 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47110 * 90.00207 * 8 6 4 10 10 H 1.48501 * 109.47137 * 210.00199 * 8 6 4 11 11 H 1.48496 * 109.47323 * 330.00240 * 8 6 4 12 12 C 1.53004 * 109.46923 * 119.99895 * 2 1 3 13 13 N 1.46901 * 109.46916 * 299.99733 * 12 2 1 14 14 C 1.46905 * 110.99870 * 180.02562 * 13 12 2 15 15 C 1.50697 * 109.47066 * 180.02562 * 14 13 12 16 16 C 1.31824 * 122.55565 * 259.71139 * 15 14 13 17 17 S 1.75297 * 111.40230 * 179.85935 * 16 15 14 18 18 C 1.75904 * 92.19567 * 0.34580 * 17 16 15 19 19 C 1.39849 * 130.56699 * 179.81079 * 18 17 16 20 20 C 1.37465 * 120.18018 * 179.97438 * 19 18 17 21 21 C 1.38854 * 120.18681 * 0.02562 * 20 19 18 22 22 C 1.36085 * 120.59144 * 0.02562 * 21 20 19 23 23 C 1.39746 * 109.67761 * 359.80931 * 18 17 16 24 24 H 1.09002 * 109.47301 * 300.00132 * 1 2 3 25 25 H 1.09001 * 109.47017 * 60.00685 * 1 2 3 26 26 H 1.09005 * 109.47249 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46999 * 179.97438 * 3 2 1 28 28 H 1.09001 * 109.46478 * 299.99645 * 3 2 1 29 29 H 1.08993 * 109.47197 * 59.99666 * 3 2 1 30 30 H 0.97007 * 120.00038 * 179.97438 * 7 6 4 31 31 H 1.09004 * 109.46889 * 180.02562 * 12 2 1 32 32 H 1.08995 * 109.47384 * 59.99754 * 12 2 1 33 33 H 1.00901 * 111.00067 * 303.95263 * 13 12 2 34 34 H 1.09001 * 109.46798 * 300.00327 * 14 13 12 35 35 H 1.08998 * 109.46961 * 60.00043 * 14 13 12 36 36 H 1.07998 * 124.29640 * 0.02562 * 16 15 14 37 37 H 1.08003 * 119.91032 * 0.02665 * 19 18 17 38 38 H 1.07994 * 119.90687 * 180.02562 * 20 19 18 39 39 H 1.08001 * 119.70100 * 179.97438 * 21 20 19 40 40 H 1.08001 * 119.77744 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1312 6 6 1.6993 -0.2395 -2.4827 7 7 0.9436 0.8300 -2.6034 8 14 2.3225 -1.1198 -4.0078 9 1 1.3449 -2.1619 -4.4122 10 1 2.4874 -0.1406 -5.1120 11 1 3.6309 -1.7569 -3.7118 12 6 2.0399 -0.7213 1.2493 13 7 1.5503 -0.0286 2.4487 14 6 2.0218 -0.6944 3.6704 15 6 1.5001 0.0422 4.8771 16 6 2.2386 0.8911 5.5640 17 16 1.3418 1.5816 6.9026 18 6 -0.0995 0.6559 6.5027 19 6 -1.3542 0.6149 7.1191 20 6 -2.3434 -0.1984 6.6193 21 6 -2.1023 -0.9840 5.5001 22 6 -0.8883 -0.9601 4.8856 23 6 0.1459 -0.1337 5.3761 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5137 -0.8901 26 1 -0.3634 -1.0277 0.0005 27 1 3.1301 1.4424 0.0005 28 1 1.6767 1.9562 -0.8901 29 1 1.6767 1.9563 0.8899 30 1 0.7095 1.1616 -3.4845 31 1 3.1300 -0.7209 1.2495 32 1 1.6766 -1.7489 1.2494 33 1 1.8198 0.9437 2.4401 34 1 1.6586 -1.7220 3.6874 35 1 3.1116 -0.6939 3.6870 36 1 3.2649 1.1326 5.3300 37 1 -1.5467 1.2244 7.9896 38 1 -3.3108 -0.2263 7.0985 39 1 -2.8850 -1.6204 5.1143 40 1 -0.7150 -1.5769 4.0161 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459694858.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:11 Heat of formation + Delta-G solvation = 23.605646 kcal Electronic energy + Delta-G solvation = -20283.197974 eV Core-core repulsion = 17381.129981 eV Total energy + Delta-G solvation = -2902.067993 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 289.120 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.56232 -38.71888 -36.96527 -34.85088 -32.73586 -31.82152 -30.31914 -27.58298 -27.50575 -27.20993 -24.82836 -23.84331 -23.33087 -20.59687 -20.21862 -19.06382 -17.88488 -17.08621 -16.58397 -16.34018 -16.02952 -15.91652 -15.67989 -15.08125 -14.67671 -14.56109 -14.18831 -14.09536 -13.91906 -13.34758 -13.28389 -13.01610 -12.91011 -12.58232 -12.49708 -12.41807 -12.16242 -12.08612 -12.04052 -11.93235 -11.55654 -11.30501 -10.95748 -10.59623 -10.50761 -10.33744 -9.45136 -9.17743 -8.59215 -7.95685 -6.12775 -0.18853 0.34260 0.61555 1.01455 1.29085 1.42877 1.45080 1.53164 2.47271 2.81673 3.26526 3.57351 3.67440 3.80472 4.09070 4.23177 4.36462 4.44155 4.51104 4.56457 4.63864 4.68122 4.74154 4.87832 4.89344 5.03152 5.10899 5.16984 5.21421 5.29224 5.39409 5.43982 5.53151 5.54369 5.65267 5.70793 5.77440 6.00164 6.15852 6.23975 6.34175 6.48862 6.61235 6.96855 7.54944 9.02414 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.026382 B = 0.003585 C = 0.003366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.066411 B = 7808.908935 C = 8316.896487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.060 3.940 3 C -0.120 4.120 4 C -0.526 4.526 5 H 0.046 0.954 6 C 0.022 3.978 7 N -0.904 5.904 8 Si 0.944 3.056 9 H -0.280 1.280 10 H -0.286 1.286 11 H -0.272 1.272 12 C 0.091 3.909 13 N -0.680 5.680 14 C 0.118 3.882 15 C -0.086 4.086 16 C -0.195 4.195 17 S 0.090 5.910 18 C -0.161 4.161 19 C -0.097 4.097 20 C -0.101 4.101 21 C -0.125 4.125 22 C -0.084 4.084 23 C -0.079 4.079 24 H 0.030 0.970 25 H 0.046 0.954 26 H 0.011 0.989 27 H 0.017 0.983 28 H 0.054 0.946 29 H 0.030 0.970 30 H 0.257 0.743 31 H 0.012 0.988 32 H 0.052 0.948 33 H 0.338 0.662 34 H 0.077 0.923 35 H 0.045 0.955 36 H 0.182 0.818 37 H 0.146 0.854 38 H 0.160 0.840 39 H 0.147 0.853 40 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.683 -0.547 20.416 20.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.059 3.941 3 C -0.178 4.178 4 C -0.564 4.564 5 H 0.064 0.936 6 C -0.177 4.177 7 N -0.543 5.543 8 Si 0.771 3.229 9 H -0.206 1.206 10 H -0.212 1.212 11 H -0.197 1.197 12 C -0.038 4.038 13 N -0.312 5.312 14 C -0.013 4.013 15 C -0.098 4.098 16 C -0.329 4.329 17 S 0.355 5.645 18 C -0.276 4.276 19 C -0.119 4.119 20 C -0.121 4.121 21 C -0.145 4.145 22 C -0.103 4.103 23 C -0.087 4.087 24 H 0.049 0.951 25 H 0.065 0.935 26 H 0.030 0.970 27 H 0.037 0.963 28 H 0.073 0.927 29 H 0.049 0.951 30 H 0.066 0.934 31 H 0.030 0.970 32 H 0.070 0.930 33 H 0.157 0.843 34 H 0.095 0.905 35 H 0.063 0.937 36 H 0.199 0.801 37 H 0.164 0.836 38 H 0.178 0.822 39 H 0.165 0.835 40 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -2.903 0.316 21.391 21.589 hybrid contribution 1.054 -1.122 -2.372 2.827 sum -1.849 -0.806 19.019 19.126 Atomic orbital electron populations 1.21445 0.97765 0.97728 0.99145 1.18145 0.92869 0.92312 0.90778 1.21652 0.97414 0.98905 0.99800 1.21432 1.31179 1.11942 0.91871 0.93563 1.25534 0.95326 0.95624 1.01177 1.69975 1.37464 1.23626 1.23231 0.85778 0.78730 0.78423 0.79967 1.20557 1.21180 1.19702 1.21838 0.95187 0.97249 0.89527 1.60533 1.63778 1.06274 1.00613 1.20566 0.96929 0.97479 0.86335 1.19728 0.92562 0.99620 0.97893 1.25135 1.04890 1.02455 1.00465 1.83783 1.02256 1.46870 1.31567 1.22988 1.00103 1.03410 1.01079 1.20789 0.90223 1.00389 1.00528 1.21426 0.99747 0.95037 0.95917 1.21054 0.96861 1.00209 0.96407 1.20916 0.92668 0.97612 0.99142 1.19282 0.94333 0.99355 0.95711 0.95071 0.93465 0.96963 0.96335 0.92664 0.95115 0.93377 0.96977 0.92964 0.84323 0.90479 0.93715 0.80109 0.83621 0.82219 0.83547 0.86107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -5.05 8.09 71.98 0.58 -4.47 16 2 C 0.06 2.86 0.57 -52.93 -0.03 2.83 16 3 C -0.12 -5.66 7.92 71.98 0.57 -5.09 16 4 C -0.53 -28.25 8.01 25.60 0.21 -28.05 16 5 H 0.05 2.48 7.74 -2.91 -0.02 2.45 16 6 C 0.02 1.21 5.15 84.66 0.44 1.65 16 7 N -0.90 -50.62 9.35 21.45 0.20 -50.42 16 8 Si 0.94 43.27 29.54 68.60 2.03 45.30 16 9 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 10 H -0.29 -12.95 7.11 99.48 0.71 -12.24 16 11 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 12 C 0.09 3.69 4.59 86.30 0.40 4.08 16 13 N -0.68 -23.60 5.70 -517.92 -2.95 -26.56 16 14 C 0.12 3.40 5.82 85.55 0.50 3.90 16 15 C -0.09 -2.34 5.48 -18.81 -0.10 -2.44 16 16 C -0.20 -4.63 10.72 67.04 0.72 -3.91 16 17 S 0.09 1.99 23.23 -56.49 -1.31 0.68 16 18 C -0.16 -4.02 6.48 23.02 0.15 -3.87 16 19 C -0.10 -1.97 10.07 22.48 0.23 -1.74 16 20 C -0.10 -1.83 10.03 22.23 0.22 -1.61 16 21 C -0.13 -2.66 9.95 21.92 0.22 -2.44 16 22 C -0.08 -2.22 9.82 22.49 0.22 -2.00 16 23 C -0.08 -2.21 6.01 -20.35 -0.12 -2.33 16 24 H 0.03 1.41 7.60 -2.39 -0.02 1.39 16 25 H 0.05 2.56 6.07 -2.39 -0.01 2.55 16 26 H 0.01 0.56 8.14 -2.38 -0.02 0.54 16 27 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 28 H 0.05 2.93 6.07 -2.39 -0.01 2.92 16 29 H 0.03 1.28 6.57 -2.39 -0.02 1.27 16 30 H 0.26 13.86 8.31 -92.70 -0.77 13.09 16 31 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 32 H 0.05 2.15 8.14 -2.39 -0.02 2.14 16 33 H 0.34 11.84 6.76 -89.69 -0.61 11.23 16 34 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 35 H 0.04 1.19 8.06 -2.39 -0.02 1.17 16 36 H 0.18 3.50 8.06 -2.91 -0.02 3.48 16 37 H 0.15 2.18 8.06 -2.91 -0.02 2.16 16 38 H 0.16 1.77 8.06 -2.91 -0.02 1.75 16 39 H 0.15 2.39 8.06 -2.91 -0.02 2.37 16 40 H 0.12 3.35 8.06 -2.91 -0.02 3.33 16 Total: -1.00 -59.44 336.06 2.57 -56.86 By element: Atomic # 1 Polarization: 19.20 SS G_CDS: 0.42 Total: 19.63 kcal Atomic # 6 Polarization: -49.68 SS G_CDS: 4.19 Total: -45.49 kcal Atomic # 7 Polarization: -74.22 SS G_CDS: -2.75 Total: -76.98 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.30 kcal Atomic # 16 Polarization: 1.99 SS G_CDS: -1.31 Total: 0.68 kcal Total: -59.44 2.57 -56.86 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459694858.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.469 kcal (2) G-P(sol) polarization free energy of solvation -59.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.863 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds