Wall clock time and date at job start Tue Mar 31 2020 06:04:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.47191 * 179.97438 * 2 1 4 4 N 1.46500 * 109.47282 * 216.93302 * 3 2 1 5 5 C 1.36932 * 120.00068 * 263.91936 * 4 3 2 6 6 H 1.08000 * 119.99928 * 201.61056 * 5 4 3 7 7 C 1.38809 * 120.00047 * 21.61654 * 5 4 3 8 8 N 1.31619 * 120.00181 * 18.04388 * 7 5 4 9 9 Si 1.86797 * 119.99941 * 198.05310 * 7 5 4 10 10 H 1.48496 * 109.47596 * 89.99500 * 9 7 5 11 11 H 1.48508 * 109.47148 * 209.99563 * 9 7 5 12 12 H 1.48500 * 109.47360 * 329.99522 * 9 7 5 13 13 C 1.46501 * 119.99820 * 84.19396 * 4 3 2 14 14 C 1.50704 * 109.47293 * 89.99957 * 13 4 3 15 15 C 1.38299 * 119.92378 * 269.72510 * 14 13 4 16 16 C 1.38082 * 120.08202 * 179.76232 * 15 14 13 17 17 C 1.38970 * 119.91739 * 0.50867 * 16 15 14 18 18 S 1.76195 * 120.07935 * 179.71991 * 17 16 15 19 19 C 1.81397 * 103.00239 * 6.34886 * 18 17 16 20 20 C 1.53007 * 109.46934 * 69.26236 * 19 18 17 21 21 C 1.52992 * 109.47605 * 189.26086 * 19 18 17 22 22 C 1.38976 * 119.84090 * 359.74616 * 17 16 15 23 23 C 1.38079 * 119.91773 * 0.02562 * 22 17 16 24 24 H 4.40640 * 5.51464 * 180.02562 * 4 1 2 25 25 H 1.09002 * 109.47043 * 96.93148 * 3 2 1 26 26 H 1.09005 * 109.47256 * 336.93517 * 3 2 1 27 27 H 0.96996 * 120.00039 * 180.02562 * 8 7 5 28 28 H 1.08997 * 109.47309 * 210.00171 * 13 4 3 29 29 H 1.09002 * 109.47227 * 330.00025 * 13 4 3 30 30 H 1.08007 * 119.95550 * 359.97438 * 15 14 13 31 31 H 1.08000 * 120.03808 * 180.25678 * 16 15 14 32 32 H 1.09003 * 109.47128 * 309.26434 * 19 18 17 33 33 H 1.08995 * 109.47391 * 65.37404 * 20 19 18 34 34 H 1.09005 * 109.47097 * 185.37856 * 20 19 18 35 35 H 1.09002 * 109.46711 * 305.37258 * 20 19 18 36 36 H 1.09004 * 109.47225 * 64.47186 * 21 19 18 37 37 H 1.09003 * 109.47817 * 184.47288 * 21 19 18 38 38 H 1.09000 * 109.47240 * 304.47573 * 21 19 18 39 39 H 1.08004 * 120.04128 * 179.97438 * 22 17 16 40 40 H 1.08007 * 119.96135 * 179.97438 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1338 1.1049 0.8299 5 6 3.4800 2.2961 0.2501 6 1 4.1469 2.9729 0.7634 7 6 2.9735 2.6339 -0.9974 8 7 1.9121 2.0132 -1.4668 9 14 3.7987 3.9691 -2.0101 10 1 4.8427 3.3615 -2.8738 11 1 2.7846 4.6440 -2.8597 12 1 4.4246 4.9636 -1.1021 13 6 3.2571 0.9327 2.2796 14 6 4.6322 0.4112 2.6084 15 6 4.8577 -0.9521 2.6652 16 6 6.1176 -1.4335 2.9614 17 6 7.1571 -0.5462 3.2130 18 16 8.7646 -1.1559 3.5986 19 6 8.5924 -2.9449 3.3531 20 6 8.4182 -3.2405 1.8620 21 6 9.8456 -3.6538 3.8704 22 6 6.9256 0.8231 3.1602 23 6 5.6643 1.2972 2.8588 24 1 -1.0502 -0.0003 0.0000 25 1 3.0092 0.1248 -1.0202 26 1 3.0098 -0.9447 0.4026 27 1 1.5584 2.2489 -2.3387 28 1 3.1046 1.8922 2.7737 29 1 2.5066 0.2222 2.6262 30 1 4.0481 -1.6410 2.4743 31 1 6.2938 -2.4983 3.0015 32 1 7.7201 -3.3043 3.8990 33 1 9.3291 -2.9685 1.3287 34 1 8.2195 -4.3033 1.7231 35 1 7.5818 -2.6605 1.4719 36 1 9.9264 -3.5089 4.9478 37 1 9.7770 -4.7193 3.6513 38 1 10.7264 -3.2381 3.3810 39 1 7.7311 1.5156 3.3556 40 1 5.4835 2.3612 2.8180 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491537915.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:58 Heat of formation + Delta-G solvation = 96.763239 kcal Electronic energy + Delta-G solvation = -20089.518771 eV Core-core repulsion = 17190.623129 eV Total energy + Delta-G solvation = -2898.895642 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 289.120 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -38.87876 -35.98809 -35.07849 -32.24325 -31.54649 -30.61062 -29.96442 -27.48552 -26.32287 -25.63947 -22.81560 -22.27973 -21.50995 -20.49413 -17.41653 -17.34977 -16.51401 -16.12216 -15.18248 -15.03629 -14.78452 -14.53045 -13.75535 -13.69104 -13.55210 -13.38906 -12.98594 -12.88450 -12.56460 -12.44908 -11.93652 -11.58990 -11.55508 -11.43133 -11.41538 -11.06552 -10.83021 -10.72329 -10.52260 -10.23529 -10.05917 -9.95608 -9.28889 -8.92784 -8.76381 -8.58956 -8.43682 -7.20841 -6.94681 -5.77945 -3.25668 1.53648 1.64058 1.75577 2.48906 3.36942 3.44367 3.44843 4.00607 4.28388 4.39255 4.53275 4.54257 4.61861 4.96446 5.13477 5.22780 5.32155 5.33026 5.43078 5.53782 5.56427 5.61822 5.71617 5.78021 5.80833 5.83828 5.87433 6.01324 6.12211 6.16524 6.45379 6.57091 6.59793 6.67086 6.80270 7.17902 7.20430 7.32416 7.42865 7.74579 8.28860 9.09551 9.20860 9.74807 10.21887 11.24546 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.019333 B = 0.004076 C = 0.003768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1447.959746 B = 6867.401090 C = 7428.375454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.302 4.302 2 C -0.093 4.093 3 C 0.271 3.729 4 N -0.578 5.578 5 C -0.265 4.265 6 H 0.073 0.927 7 C 0.006 3.994 8 N -0.889 5.889 9 Si 0.901 3.099 10 H -0.287 1.287 11 H -0.292 1.292 12 H -0.279 1.279 13 C 0.179 3.821 14 C -0.076 4.076 15 C -0.098 4.098 16 C -0.134 4.134 17 C -0.095 4.095 18 S -0.139 6.139 19 C -0.078 4.078 20 C -0.154 4.154 21 C -0.132 4.132 22 C -0.101 4.101 23 C -0.085 4.085 24 H 0.190 0.810 25 H 0.092 0.908 26 H 0.034 0.966 27 H 0.254 0.746 28 H 0.060 0.940 29 H 0.048 0.952 30 H 0.119 0.881 31 H 0.117 0.883 32 H 0.091 0.909 33 H 0.066 0.934 34 H 0.063 0.937 35 H 0.068 0.932 36 H 0.064 0.936 37 H 0.071 0.929 38 H 0.064 0.936 39 H 0.119 0.881 40 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.985 -10.248 9.554 17.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.321 4.321 2 C -0.096 4.096 3 C 0.145 3.855 4 N -0.297 5.297 5 C -0.393 4.393 6 H 0.091 0.909 7 C -0.193 4.193 8 N -0.532 5.532 9 Si 0.731 3.269 10 H -0.214 1.214 11 H -0.219 1.219 12 H -0.205 1.205 13 C 0.052 3.948 14 C -0.081 4.081 15 C -0.118 4.118 16 C -0.158 4.158 17 C -0.208 4.208 18 S 0.103 5.897 19 C -0.206 4.206 20 C -0.212 4.212 21 C -0.191 4.191 22 C -0.124 4.124 23 C -0.106 4.106 24 H 0.207 0.793 25 H 0.110 0.890 26 H 0.052 0.948 27 H 0.065 0.935 28 H 0.078 0.922 29 H 0.067 0.933 30 H 0.137 0.863 31 H 0.135 0.865 32 H 0.110 0.890 33 H 0.086 0.914 34 H 0.082 0.918 35 H 0.087 0.913 36 H 0.083 0.917 37 H 0.090 0.910 38 H 0.083 0.917 39 H 0.137 0.863 40 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 11.971 -9.660 9.740 18.207 hybrid contribution -1.104 0.215 -1.191 1.638 sum 10.868 -9.445 8.549 16.745 Atomic orbital electron populations 1.24163 0.95312 1.06650 1.05971 1.24229 0.95243 0.94665 0.95490 1.17681 0.82855 0.87935 0.96981 1.43918 1.74610 1.11403 0.99752 1.19167 1.22615 0.96250 1.01309 0.90896 1.24975 0.96072 0.98667 0.99603 1.70072 1.20323 1.43875 1.18922 0.86309 0.78711 0.81421 0.80431 1.21418 1.21856 1.20456 1.19824 0.89631 0.99049 0.86311 1.21154 0.99131 0.93039 0.94732 1.20932 0.96002 0.95422 0.99481 1.21065 0.93088 0.98313 1.03293 1.21414 0.95860 0.96657 1.06821 1.85252 1.13083 1.05001 1.86326 1.23287 1.02688 0.94159 1.00512 1.22188 1.03580 1.02017 0.93434 1.21605 0.95774 1.00033 1.01655 1.20693 0.97417 0.92854 1.01477 1.21000 0.91769 0.99945 0.97874 0.79317 0.89032 0.94796 0.93508 0.92177 0.93337 0.86312 0.86481 0.89046 0.91444 0.91827 0.91282 0.91677 0.91005 0.91676 0.86305 0.85727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.30 -6.88 19.25 29.55 0.57 -6.31 16 2 C -0.09 -2.26 11.41 -37.13 -0.42 -2.69 16 3 C 0.27 6.36 5.41 -6.83 -0.04 6.32 16 4 N -0.58 -13.78 2.47 -177.95 -0.44 -14.21 16 5 C -0.26 -6.94 9.64 -15.06 -0.15 -7.09 16 6 H 0.07 1.88 7.89 -52.49 -0.41 1.46 16 7 C 0.01 0.17 4.92 -17.43 -0.09 0.08 16 8 N -0.89 -25.07 9.42 55.49 0.52 -24.55 16 9 Si 0.90 21.49 29.59 -169.99 -5.03 16.46 16 10 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 11 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 12 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 13 C 0.18 3.56 5.80 -5.19 -0.03 3.53 16 14 C -0.08 -1.34 5.47 -104.57 -0.57 -1.91 16 15 C -0.10 -1.57 9.69 -39.62 -0.38 -1.96 16 16 C -0.13 -1.97 8.00 -39.37 -0.32 -2.28 16 17 C -0.10 -1.43 5.97 -39.04 -0.23 -1.66 16 18 S -0.14 -1.77 21.31 -107.50 -2.29 -4.06 16 19 C -0.08 -0.77 2.60 -26.73 -0.07 -0.84 16 20 C -0.15 -1.52 8.70 37.16 0.32 -1.19 16 21 C -0.13 -1.02 9.20 37.15 0.34 -0.68 16 22 C -0.10 -1.59 9.79 -39.37 -0.39 -1.98 16 23 C -0.09 -1.46 9.69 -39.62 -0.38 -1.84 16 24 H 0.19 3.62 7.80 -54.08 -0.42 3.20 16 25 H 0.09 2.37 6.62 -51.93 -0.34 2.03 16 26 H 0.03 0.70 8.11 -51.93 -0.42 0.28 16 27 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 28 H 0.06 1.20 7.98 -51.93 -0.41 0.78 16 29 H 0.05 0.92 8.01 -51.93 -0.42 0.50 16 30 H 0.12 1.76 8.06 -52.48 -0.42 1.34 16 31 H 0.12 1.46 4.99 -52.49 -0.26 1.20 16 32 H 0.09 0.88 6.88 -51.92 -0.36 0.53 16 33 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 35 H 0.07 0.82 6.04 -51.93 -0.31 0.50 16 36 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 38 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.12 1.68 8.06 -52.48 -0.42 1.26 16 40 H 0.12 2.07 8.06 -52.48 -0.42 1.65 16 LS Contribution 347.17 15.07 5.23 5.23 Total: -1.00 -29.23 347.17 -9.72 -38.95 By element: Atomic # 1 Polarization: 8.56 SS G_CDS: -5.88 Total: 2.67 kcal Atomic # 6 Polarization: -18.67 SS G_CDS: -1.83 Total: -20.50 kcal Atomic # 7 Polarization: -38.84 SS G_CDS: 0.08 Total: -38.76 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.03 Total: 16.46 kcal Atomic # 16 Polarization: -1.77 SS G_CDS: -2.29 Total: -4.06 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -29.23 -9.72 -38.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491537915.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.713 kcal (2) G-P(sol) polarization free energy of solvation -29.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.950 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds