Wall clock time and date at job start Tue Mar 31 2020 06:04:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.47191 * 179.97438 * 2 1 4 4 N 1.46500 * 109.47282 * 216.93302 * 3 2 1 5 5 C 1.36932 * 120.00068 * 263.91936 * 4 3 2 6 6 H 1.08000 * 119.99928 * 201.61056 * 5 4 3 7 7 C 1.38809 * 120.00047 * 21.61654 * 5 4 3 8 8 N 1.31619 * 120.00181 * 18.04388 * 7 5 4 9 9 Si 1.86797 * 119.99941 * 198.05310 * 7 5 4 10 10 H 1.48496 * 109.47596 * 89.99500 * 9 7 5 11 11 H 1.48508 * 109.47148 * 209.99563 * 9 7 5 12 12 H 1.48500 * 109.47360 * 329.99522 * 9 7 5 13 13 C 1.46501 * 119.99820 * 84.19396 * 4 3 2 14 14 C 1.50704 * 109.47293 * 89.99957 * 13 4 3 15 15 C 1.38299 * 119.92378 * 269.72510 * 14 13 4 16 16 C 1.38082 * 120.08202 * 179.76232 * 15 14 13 17 17 C 1.38970 * 119.91739 * 0.50867 * 16 15 14 18 18 S 1.76195 * 120.07935 * 179.71991 * 17 16 15 19 19 C 1.81397 * 103.00239 * 6.34886 * 18 17 16 20 20 C 1.53007 * 109.46934 * 69.26236 * 19 18 17 21 21 C 1.52992 * 109.47605 * 189.26086 * 19 18 17 22 22 C 1.38976 * 119.84090 * 359.74616 * 17 16 15 23 23 C 1.38079 * 119.91773 * 0.02562 * 22 17 16 24 24 H 4.40640 * 5.51464 * 180.02562 * 4 1 2 25 25 H 1.09002 * 109.47043 * 96.93148 * 3 2 1 26 26 H 1.09005 * 109.47256 * 336.93517 * 3 2 1 27 27 H 0.96996 * 120.00039 * 180.02562 * 8 7 5 28 28 H 1.08997 * 109.47309 * 210.00171 * 13 4 3 29 29 H 1.09002 * 109.47227 * 330.00025 * 13 4 3 30 30 H 1.08007 * 119.95550 * 359.97438 * 15 14 13 31 31 H 1.08000 * 120.03808 * 180.25678 * 16 15 14 32 32 H 1.09003 * 109.47128 * 309.26434 * 19 18 17 33 33 H 1.08995 * 109.47391 * 65.37404 * 20 19 18 34 34 H 1.09005 * 109.47097 * 185.37856 * 20 19 18 35 35 H 1.09002 * 109.46711 * 305.37258 * 20 19 18 36 36 H 1.09004 * 109.47225 * 64.47186 * 21 19 18 37 37 H 1.09003 * 109.47817 * 184.47288 * 21 19 18 38 38 H 1.09000 * 109.47240 * 304.47573 * 21 19 18 39 39 H 1.08004 * 120.04128 * 179.97438 * 22 17 16 40 40 H 1.08007 * 119.96135 * 179.97438 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1338 1.1049 0.8299 5 6 3.4800 2.2961 0.2501 6 1 4.1469 2.9729 0.7634 7 6 2.9735 2.6339 -0.9974 8 7 1.9121 2.0132 -1.4668 9 14 3.7987 3.9691 -2.0101 10 1 4.8427 3.3615 -2.8738 11 1 2.7846 4.6440 -2.8597 12 1 4.4246 4.9636 -1.1021 13 6 3.2571 0.9327 2.2796 14 6 4.6322 0.4112 2.6084 15 6 4.8577 -0.9521 2.6652 16 6 6.1176 -1.4335 2.9614 17 6 7.1571 -0.5462 3.2130 18 16 8.7646 -1.1559 3.5986 19 6 8.5924 -2.9449 3.3531 20 6 8.4182 -3.2405 1.8620 21 6 9.8456 -3.6538 3.8704 22 6 6.9256 0.8231 3.1602 23 6 5.6643 1.2972 2.8588 24 1 -1.0502 -0.0003 0.0000 25 1 3.0092 0.1248 -1.0202 26 1 3.0098 -0.9447 0.4026 27 1 1.5584 2.2489 -2.3387 28 1 3.1046 1.8922 2.7737 29 1 2.5066 0.2222 2.6262 30 1 4.0481 -1.6410 2.4743 31 1 6.2938 -2.4983 3.0015 32 1 7.7201 -3.3043 3.8990 33 1 9.3291 -2.9685 1.3287 34 1 8.2195 -4.3033 1.7231 35 1 7.5818 -2.6605 1.4719 36 1 9.9264 -3.5089 4.9478 37 1 9.7770 -4.7193 3.6513 38 1 10.7264 -3.2381 3.3810 39 1 7.7311 1.5156 3.3556 40 1 5.4835 2.3612 2.8180 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491537915.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:57 Heat of formation + Delta-G solvation = 84.727996 kcal Electronic energy + Delta-G solvation = -20090.040659 eV Core-core repulsion = 17190.623129 eV Total energy + Delta-G solvation = -2899.417529 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 289.120 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.17269 -37.73122 -35.85005 -33.87406 -33.42476 -31.83425 -31.59324 -28.31525 -27.97026 -27.36929 -24.02262 -23.82667 -22.45869 -21.95503 -19.28645 -18.55158 -18.09074 -17.23261 -16.97027 -16.32030 -16.06794 -15.55488 -15.51907 -15.21244 -14.86035 -14.54625 -14.38488 -14.08247 -13.74482 -13.36531 -13.24941 -13.12683 -13.03227 -12.78089 -12.61591 -12.30586 -12.26719 -12.18527 -12.05984 -11.88928 -11.80671 -10.91707 -10.81007 -10.76557 -10.40227 -10.31683 -9.82757 -8.90236 -8.26235 -7.80404 -5.28603 0.32135 0.51246 0.62323 1.46224 1.48991 1.49573 1.55677 2.32863 2.53031 2.60641 2.84931 3.31280 3.79929 3.88883 3.91730 3.95304 4.04232 4.10150 4.19135 4.28935 4.45281 4.55196 4.69865 4.75525 4.76787 4.85274 4.87905 4.91478 4.94453 5.05383 5.17397 5.23188 5.26185 5.28088 5.35424 5.46856 5.66511 5.68632 5.85121 6.05254 6.31341 7.11378 7.38093 7.82107 8.26139 9.19259 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.019333 B = 0.004076 C = 0.003768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1447.959746 B = 6867.401090 C = 7428.375454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.294 4.294 2 C -0.131 4.131 3 C 0.276 3.724 4 N -0.591 5.591 5 C -0.264 4.264 6 H 0.072 0.928 7 C -0.043 4.043 8 N -0.913 5.913 9 Si 0.957 3.043 10 H -0.289 1.289 11 H -0.299 1.299 12 H -0.271 1.271 13 C 0.183 3.817 14 C -0.094 4.094 15 C -0.101 4.101 16 C -0.131 4.131 17 C -0.098 4.098 18 S -0.148 6.148 19 C -0.072 4.072 20 C -0.152 4.152 21 C -0.130 4.130 22 C -0.110 4.110 23 C -0.097 4.097 24 H 0.221 0.779 25 H 0.061 0.939 26 H 0.060 0.940 27 H 0.246 0.754 28 H 0.052 0.948 29 H 0.056 0.944 30 H 0.130 0.870 31 H 0.141 0.859 32 H 0.098 0.902 33 H 0.066 0.934 34 H 0.085 0.915 35 H 0.047 0.953 36 H 0.068 0.932 37 H 0.094 0.906 38 H 0.063 0.937 39 H 0.131 0.869 40 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.209 -11.813 10.439 19.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.313 4.313 2 C -0.134 4.134 3 C 0.151 3.849 4 N -0.311 5.311 5 C -0.394 4.394 6 H 0.090 0.910 7 C -0.239 4.239 8 N -0.558 5.558 9 Si 0.787 3.213 10 H -0.216 1.216 11 H -0.226 1.226 12 H -0.196 1.196 13 C 0.057 3.943 14 C -0.098 4.098 15 C -0.121 4.121 16 C -0.154 4.154 17 C -0.210 4.210 18 S 0.094 5.906 19 C -0.201 4.201 20 C -0.211 4.211 21 C -0.188 4.188 22 C -0.133 4.133 23 C -0.118 4.118 24 H 0.238 0.762 25 H 0.079 0.921 26 H 0.078 0.922 27 H 0.056 0.944 28 H 0.071 0.929 29 H 0.074 0.926 30 H 0.148 0.852 31 H 0.159 0.841 32 H 0.116 0.884 33 H 0.085 0.915 34 H 0.104 0.896 35 H 0.066 0.934 36 H 0.087 0.913 37 H 0.112 0.888 38 H 0.082 0.918 39 H 0.149 0.851 40 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 13.224 -11.229 10.664 20.364 hybrid contribution -1.408 0.601 -1.370 2.055 sum 11.815 -10.628 9.293 18.410 Atomic orbital electron populations 1.24977 0.96330 1.05394 1.04567 1.24611 0.96071 0.95888 0.96792 1.17564 0.82869 0.88925 0.95581 1.44073 1.74799 1.10825 1.01352 1.19412 1.21710 0.96877 1.01392 0.91004 1.25583 0.96795 1.00839 1.00677 1.70229 1.21582 1.45358 1.18647 0.85421 0.77486 0.79468 0.78968 1.21601 1.22600 1.19633 1.19833 0.91302 0.99015 0.84101 1.20875 0.97903 0.94040 0.97010 1.21076 0.97080 0.94806 0.99155 1.21300 0.92311 0.99530 1.02244 1.21693 0.97304 0.96574 1.05452 1.85320 1.11361 1.08024 1.85847 1.23454 1.04192 0.91621 1.00802 1.22171 1.02690 1.03074 0.93174 1.21629 0.94432 1.00963 1.01777 1.20854 0.97182 0.93752 1.01520 1.21035 0.92422 0.99771 0.98526 0.76229 0.92051 0.92230 0.94446 0.92940 0.92587 0.85210 0.84096 0.88360 0.91515 0.89600 0.93366 0.91313 0.88785 0.91809 0.85143 0.86225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.29 -13.14 19.25 74.32 1.43 -11.71 16 2 C -0.13 -6.34 11.41 31.12 0.36 -5.98 16 3 C 0.28 13.09 5.41 84.57 0.46 13.54 16 4 N -0.59 -28.44 2.47 -716.91 -1.77 -30.21 16 5 C -0.26 -14.04 9.64 84.03 0.81 -13.23 16 6 H 0.07 3.75 7.89 -2.91 -0.02 3.73 16 7 C -0.04 -2.33 4.92 84.86 0.42 -1.91 16 8 N -0.91 -52.40 9.42 21.65 0.20 -52.20 16 9 Si 0.96 44.84 29.59 68.60 2.03 46.87 16 10 H -0.29 -13.48 7.11 99.48 0.71 -12.78 16 11 H -0.30 -14.24 7.11 99.48 0.71 -13.53 16 12 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 13 C 0.18 7.33 5.80 85.63 0.50 7.82 16 14 C -0.09 -3.30 5.47 -19.83 -0.11 -3.41 16 15 C -0.10 -3.12 9.69 22.25 0.22 -2.90 16 16 C -0.13 -3.59 8.00 22.41 0.18 -3.41 16 17 C -0.10 -2.79 5.97 22.62 0.13 -2.66 16 18 S -0.15 -3.49 21.31 -56.49 -1.20 -4.69 16 19 C -0.07 -1.22 2.60 30.59 0.08 -1.14 16 20 C -0.15 -2.60 8.70 71.98 0.63 -1.97 16 21 C -0.13 -1.57 9.20 71.98 0.66 -0.91 16 22 C -0.11 -3.39 9.79 22.41 0.22 -3.17 16 23 C -0.10 -3.32 9.69 22.25 0.22 -3.10 16 24 H 0.22 7.98 7.80 -4.41 -0.03 7.94 16 25 H 0.06 3.26 6.62 -2.39 -0.02 3.25 16 26 H 0.06 2.45 8.11 -2.38 -0.02 2.43 16 27 H 0.25 14.00 8.31 -92.71 -0.77 13.23 16 28 H 0.05 2.13 7.98 -2.39 -0.02 2.11 16 29 H 0.06 2.12 8.01 -2.39 -0.02 2.10 16 30 H 0.13 3.65 8.06 -2.91 -0.02 3.62 16 31 H 0.14 3.13 4.99 -2.91 -0.01 3.11 16 32 H 0.10 1.56 6.88 -2.39 -0.02 1.55 16 33 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.09 1.09 8.14 -2.38 -0.02 1.07 16 35 H 0.05 1.03 6.04 -2.39 -0.01 1.02 16 36 H 0.07 0.81 8.14 -2.38 -0.02 0.79 16 37 H 0.09 0.78 8.14 -2.39 -0.02 0.77 16 38 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 39 H 0.13 3.61 8.06 -2.91 -0.02 3.59 16 40 H 0.12 4.07 8.06 -2.91 -0.02 4.05 16 Total: -1.00 -62.38 347.17 6.46 -55.92 By element: Atomic # 1 Polarization: 17.43 SS G_CDS: 1.01 Total: 18.44 kcal Atomic # 6 Polarization: -40.33 SS G_CDS: 6.19 Total: -34.14 kcal Atomic # 7 Polarization: -80.84 SS G_CDS: -1.57 Total: -82.40 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.87 kcal Atomic # 16 Polarization: -3.49 SS G_CDS: -1.20 Total: -4.69 kcal Total: -62.38 6.46 -55.92 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491537915.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.651 kcal (2) G-P(sol) polarization free energy of solvation -62.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.923 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds