Wall clock time and date at job start Tue Mar 31 2020 05:58:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46495 * 109.47402 * 6.88226 * 3 2 1 5 5 C 1.37098 * 120.00025 * 264.13802 * 4 3 2 6 6 H 1.08001 * 119.99871 * 197.43973 * 5 4 3 7 7 C 1.38944 * 119.99925 * 17.43731 * 5 4 3 8 8 N 1.31406 * 120.00329 * 21.51980 * 7 5 4 9 9 Si 1.86806 * 119.99975 * 201.51803 * 7 5 4 10 10 H 1.48501 * 109.46801 * 60.00232 * 9 7 5 11 11 H 1.48495 * 109.47026 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47262 * 300.00608 * 9 7 5 13 13 C 1.34775 * 120.00163 * 84.14116 * 4 3 2 14 14 O 1.21289 * 120.00476 * 179.97438 * 13 4 3 15 15 C 1.50708 * 119.99837 * 359.97438 * 13 4 3 16 16 C 1.52996 * 109.46967 * 179.97438 * 15 13 4 17 17 C 1.53004 * 109.46949 * 179.97438 * 16 15 13 18 18 C 1.50701 * 109.46983 * 180.02562 * 17 16 15 19 19 C 1.38246 * 119.97939 * 270.32342 * 18 17 16 20 20 C 1.38190 * 120.02570 * 180.28205 * 19 18 17 21 21 C 1.38466 * 119.97567 * 359.41992 * 20 19 18 22 22 F 1.35103 * 120.02410 * 180.30031 * 21 20 19 23 23 C 1.38453 * 119.94663 * 0.28504 * 21 20 19 24 24 C 1.38203 * 119.97798 * 359.97438 * 23 21 20 25 25 H 4.40634 * 5.51344 * 180.02562 * 4 1 2 26 26 H 1.09002 * 109.46891 * 246.87855 * 3 2 1 27 27 H 1.09002 * 109.47243 * 126.88625 * 3 2 1 28 28 H 0.97000 * 120.00414 * 179.97438 * 8 7 5 29 29 H 1.09001 * 109.46600 * 60.00128 * 15 13 4 30 30 H 1.09000 * 109.47050 * 300.00286 * 15 13 4 31 31 H 1.09008 * 109.46871 * 60.00872 * 16 15 13 32 32 H 1.08992 * 109.47519 * 300.00411 * 16 15 13 33 33 H 1.08994 * 109.46694 * 60.00707 * 17 16 15 34 34 H 1.09000 * 109.47235 * 300.00549 * 17 16 15 35 35 H 1.08000 * 119.98342 * 0.02562 * 19 18 17 36 36 H 1.07997 * 120.01462 * 179.69897 * 20 19 18 37 37 H 1.08004 * 120.01308 * 180.02562 * 23 21 20 38 38 H 1.07999 * 119.99013 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1350 -1.3703 -0.1655 5 6 3.4782 -2.1132 0.9345 6 1 4.0912 -2.9951 0.8207 7 6 3.0374 -1.7315 2.1957 8 7 1.9857 -0.9529 2.3164 9 14 3.9398 -2.3251 3.7198 10 1 5.3482 -1.8566 3.6750 11 1 3.2759 -1.7809 4.9314 12 1 3.9130 -3.8092 3.7642 13 6 3.2476 -1.9013 -1.3991 14 8 3.6528 -3.0363 -1.5362 15 6 2.8698 -1.0849 -2.6083 16 6 3.0905 -1.9158 -3.8738 17 6 2.7064 -1.0872 -5.1014 18 6 2.9231 -1.9059 -6.3479 19 6 4.1471 -1.8760 -6.9898 20 6 4.3451 -2.6218 -8.1362 21 6 3.3207 -3.4085 -8.6352 22 9 3.5151 -4.1428 -9.7526 23 6 2.0972 -3.4424 -7.9881 24 6 1.8998 -2.6915 -6.8447 25 1 -1.0497 -0.0004 -0.0002 26 1 3.0091 0.4044 0.9451 27 1 3.0091 0.6177 -0.8220 28 1 1.6778 -0.6867 3.1968 29 1 3.4893 -0.1890 -2.6496 30 1 1.8204 -0.7982 -2.5397 31 1 2.4712 -2.8120 -3.8327 32 1 4.1399 -2.2022 -3.9421 33 1 3.3252 -0.1909 -5.1427 34 1 1.6568 -0.8012 -5.0328 35 1 4.9476 -1.2664 -6.5975 36 1 5.2998 -2.5946 -8.6403 37 1 1.2976 -4.0560 -8.3762 38 1 0.9456 -2.7181 -6.3395 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491675614.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:13 Heat of formation + Delta-G solvation = -4.158294 kcal Electronic energy + Delta-G solvation = -21527.334490 eV Core-core repulsion = 18057.849386 eV Total energy + Delta-G solvation = -3469.485104 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.122 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -48.98892 -39.37031 -38.62673 -35.38021 -34.38391 -32.16072 -31.24980 -31.21709 -30.62571 -27.00592 -26.24623 -24.46493 -23.16782 -22.34461 -20.84147 -18.84409 -17.86698 -17.76655 -16.63282 -16.51238 -16.13211 -15.69598 -15.54495 -15.03402 -14.56689 -14.26379 -13.98991 -13.89642 -13.62399 -13.27262 -13.03299 -12.67507 -12.41920 -12.24113 -11.94783 -11.65747 -11.45285 -11.21266 -11.08281 -11.02433 -10.81762 -10.54466 -10.37114 -10.26594 -9.36878 -9.26388 -9.22700 -8.89696 -8.61148 -8.37575 -7.85616 -6.32852 -3.84970 1.03720 1.11505 3.17482 3.24814 3.28253 3.46662 3.68471 3.93050 4.04362 4.15418 4.18602 4.58687 4.65839 4.76129 4.97287 5.04863 5.10340 5.17157 5.39736 5.44492 5.51953 5.55955 5.73342 5.84428 5.89772 5.97274 5.99724 6.04519 6.11446 6.15009 6.37391 6.40474 6.61039 6.69282 6.75194 6.79761 7.02009 7.56864 8.06727 8.43802 8.79500 9.15171 9.37653 9.93476 10.68148 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.028720 B = 0.002981 C = 0.002823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.700321 B = 9389.809811 C = 9916.346600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.263 4.263 2 C -0.112 4.112 3 C 0.232 3.768 4 N -0.443 5.443 5 C -0.317 4.317 6 H 0.103 0.897 7 C 0.031 3.969 8 N -0.864 5.864 9 Si 0.920 3.080 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.274 1.274 13 C 0.450 3.550 14 O -0.585 6.585 15 C -0.132 4.132 16 C -0.092 4.092 17 C -0.084 4.084 18 C -0.081 4.081 19 C -0.089 4.089 20 C -0.152 4.152 21 C 0.084 3.916 22 F -0.145 7.145 23 C -0.152 4.152 24 C -0.088 4.088 25 H 0.199 0.801 26 H 0.109 0.891 27 H 0.062 0.938 28 H 0.268 0.732 29 H 0.076 0.924 30 H 0.080 0.920 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.133 0.867 36 H 0.133 0.867 37 H 0.133 0.867 38 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.020 3.967 -15.577 16.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.282 4.282 2 C -0.113 4.113 3 C 0.108 3.892 4 N -0.161 5.161 5 C -0.444 4.444 6 H 0.121 0.879 7 C -0.173 4.173 8 N -0.502 5.502 9 Si 0.747 3.253 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.199 1.199 13 C 0.239 3.761 14 O -0.469 6.469 15 C -0.173 4.173 16 C -0.130 4.130 17 C -0.121 4.121 18 C -0.081 4.081 19 C -0.107 4.107 20 C -0.171 4.171 21 C 0.065 3.935 22 F -0.124 7.124 23 C -0.170 4.170 24 C -0.106 4.106 25 H 0.216 0.784 26 H 0.127 0.873 27 H 0.080 0.920 28 H 0.079 0.921 29 H 0.094 0.906 30 H 0.098 0.902 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.092 0.908 34 H 0.093 0.907 35 H 0.151 0.849 36 H 0.151 0.849 37 H 0.151 0.849 38 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 0.113 3.458 -15.496 15.877 hybrid contribution -0.044 -0.376 0.802 0.887 sum 0.069 3.082 -14.694 15.014 Atomic orbital electron populations 1.24265 0.95374 1.02331 1.06195 1.23210 0.94381 0.98147 0.95608 1.18252 0.84226 0.84802 1.01875 1.43723 1.56098 1.11080 1.05247 1.19618 1.30255 1.10928 0.83601 0.87934 1.25265 0.95164 0.97608 0.99228 1.70074 1.19703 1.35919 1.24478 0.86097 0.79638 0.79234 0.80357 1.19922 1.21076 1.19888 1.20133 0.84086 0.87594 0.84305 1.90518 1.51065 1.19456 1.85871 1.21584 1.02450 0.99119 0.94111 1.21249 1.02739 0.98054 0.90972 1.20725 1.02556 0.97520 0.91286 1.20078 0.93523 0.97720 0.96767 1.20962 0.97084 0.98515 0.94107 1.21125 0.98914 0.98709 0.98332 1.17719 0.95404 0.94932 0.85405 1.91481 1.95721 1.75357 1.49794 1.21133 0.96392 1.02169 0.97352 1.20984 0.99556 0.95255 0.94846 0.78432 0.87337 0.91978 0.92135 0.90556 0.90197 0.91335 0.91320 0.90767 0.90742 0.84911 0.84937 0.84926 0.84894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -5.31 19.25 29.55 0.57 -4.74 16 2 C -0.11 -2.44 10.88 -37.12 -0.40 -2.84 16 3 C 0.23 4.99 4.91 -6.83 -0.03 4.95 16 4 N -0.44 -11.00 2.60 -117.94 -0.31 -11.30 16 5 C -0.32 -8.66 9.33 -14.93 -0.14 -8.80 16 6 H 0.10 2.96 7.38 -52.49 -0.39 2.58 16 7 C 0.03 0.81 4.87 -17.47 -0.09 0.73 16 8 N -0.86 -22.49 9.48 55.50 0.53 -21.96 16 9 Si 0.92 20.37 29.60 -169.99 -5.03 15.34 16 10 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 11 H -0.29 -6.21 7.11 56.52 0.40 -5.81 16 12 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 13 C 0.45 10.63 7.56 -10.98 -0.08 10.55 16 14 O -0.58 -15.92 15.63 5.55 0.09 -15.83 16 15 C -0.13 -2.28 4.31 -27.88 -0.12 -2.40 16 16 C -0.09 -1.41 4.49 -26.73 -0.12 -1.53 16 17 C -0.08 -0.94 5.34 -27.88 -0.15 -1.09 16 18 C -0.08 -0.91 5.13 -104.61 -0.54 -1.45 16 19 C -0.09 -0.94 9.70 -39.60 -0.38 -1.33 16 20 C -0.15 -1.61 10.03 -39.52 -0.40 -2.01 16 21 C 0.08 0.97 7.30 -39.42 -0.29 0.69 16 22 F -0.14 -1.74 17.27 2.25 0.04 -1.70 16 23 C -0.15 -1.63 10.03 -39.51 -0.40 -2.03 16 24 C -0.09 -0.96 9.70 -39.59 -0.38 -1.35 16 25 H 0.20 3.24 7.80 -54.10 -0.42 2.82 16 26 H 0.11 2.47 6.44 -51.93 -0.33 2.14 16 27 H 0.06 1.09 6.69 -51.93 -0.35 0.74 16 28 H 0.27 6.71 8.31 -40.82 -0.34 6.37 16 29 H 0.08 1.13 7.41 -51.93 -0.39 0.74 16 30 H 0.08 1.34 7.50 -51.93 -0.39 0.95 16 31 H 0.07 1.16 8.10 -51.92 -0.42 0.74 16 32 H 0.07 1.12 8.10 -51.93 -0.42 0.70 16 33 H 0.07 0.73 8.09 -51.93 -0.42 0.31 16 34 H 0.07 0.78 8.08 -51.93 -0.42 0.36 16 35 H 0.13 1.17 8.06 -52.49 -0.42 0.75 16 36 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 37 H 0.13 1.18 8.06 -52.48 -0.42 0.76 16 38 H 0.13 1.25 8.06 -52.49 -0.42 0.82 16 LS Contribution 334.85 15.07 5.05 5.05 Total: -1.00 -31.32 334.85 -7.36 -38.69 By element: Atomic # 1 Polarization: 9.15 SS G_CDS: -4.77 Total: 4.38 kcal Atomic # 6 Polarization: -9.70 SS G_CDS: -2.95 Total: -12.65 kcal Atomic # 7 Polarization: -33.49 SS G_CDS: 0.22 Total: -33.27 kcal Atomic # 8 Polarization: -15.92 SS G_CDS: 0.09 Total: -15.83 kcal Atomic # 9 Polarization: -1.74 SS G_CDS: 0.04 Total: -1.70 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.03 Total: 15.34 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -31.32 -7.36 -38.69 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491675614.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.529 kcal (2) G-P(sol) polarization free energy of solvation -31.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds