Wall clock time and date at job start Tue Mar 31 2020 05:58:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46495 * 109.47402 * 6.88226 * 3 2 1 5 5 C 1.37098 * 120.00025 * 264.13802 * 4 3 2 6 6 H 1.08001 * 119.99871 * 197.43973 * 5 4 3 7 7 C 1.38944 * 119.99925 * 17.43731 * 5 4 3 8 8 N 1.31406 * 120.00329 * 21.51980 * 7 5 4 9 9 Si 1.86806 * 119.99975 * 201.51803 * 7 5 4 10 10 H 1.48501 * 109.46801 * 60.00232 * 9 7 5 11 11 H 1.48495 * 109.47026 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47262 * 300.00608 * 9 7 5 13 13 C 1.34775 * 120.00163 * 84.14116 * 4 3 2 14 14 O 1.21289 * 120.00476 * 179.97438 * 13 4 3 15 15 C 1.50708 * 119.99837 * 359.97438 * 13 4 3 16 16 C 1.52996 * 109.46967 * 179.97438 * 15 13 4 17 17 C 1.53004 * 109.46949 * 179.97438 * 16 15 13 18 18 C 1.50701 * 109.46983 * 180.02562 * 17 16 15 19 19 C 1.38246 * 119.97939 * 270.32342 * 18 17 16 20 20 C 1.38190 * 120.02570 * 180.28205 * 19 18 17 21 21 C 1.38466 * 119.97567 * 359.41992 * 20 19 18 22 22 F 1.35103 * 120.02410 * 180.30031 * 21 20 19 23 23 C 1.38453 * 119.94663 * 0.28504 * 21 20 19 24 24 C 1.38203 * 119.97798 * 359.97438 * 23 21 20 25 25 H 4.40634 * 5.51344 * 180.02562 * 4 1 2 26 26 H 1.09002 * 109.46891 * 246.87855 * 3 2 1 27 27 H 1.09002 * 109.47243 * 126.88625 * 3 2 1 28 28 H 0.97000 * 120.00414 * 179.97438 * 8 7 5 29 29 H 1.09001 * 109.46600 * 60.00128 * 15 13 4 30 30 H 1.09000 * 109.47050 * 300.00286 * 15 13 4 31 31 H 1.09008 * 109.46871 * 60.00872 * 16 15 13 32 32 H 1.08992 * 109.47519 * 300.00411 * 16 15 13 33 33 H 1.08994 * 109.46694 * 60.00707 * 17 16 15 34 34 H 1.09000 * 109.47235 * 300.00549 * 17 16 15 35 35 H 1.08000 * 119.98342 * 0.02562 * 19 18 17 36 36 H 1.07997 * 120.01462 * 179.69897 * 20 19 18 37 37 H 1.08004 * 120.01308 * 180.02562 * 23 21 20 38 38 H 1.07999 * 119.99013 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1350 -1.3703 -0.1655 5 6 3.4782 -2.1132 0.9345 6 1 4.0912 -2.9951 0.8207 7 6 3.0374 -1.7315 2.1957 8 7 1.9857 -0.9529 2.3164 9 14 3.9398 -2.3251 3.7198 10 1 5.3482 -1.8566 3.6750 11 1 3.2759 -1.7809 4.9314 12 1 3.9130 -3.8092 3.7642 13 6 3.2476 -1.9013 -1.3991 14 8 3.6528 -3.0363 -1.5362 15 6 2.8698 -1.0849 -2.6083 16 6 3.0905 -1.9158 -3.8738 17 6 2.7064 -1.0872 -5.1014 18 6 2.9231 -1.9059 -6.3479 19 6 4.1471 -1.8760 -6.9898 20 6 4.3451 -2.6218 -8.1362 21 6 3.3207 -3.4085 -8.6352 22 9 3.5151 -4.1428 -9.7526 23 6 2.0972 -3.4424 -7.9881 24 6 1.8998 -2.6915 -6.8447 25 1 -1.0497 -0.0004 -0.0002 26 1 3.0091 0.4044 0.9451 27 1 3.0091 0.6177 -0.8220 28 1 1.6778 -0.6867 3.1968 29 1 3.4893 -0.1890 -2.6496 30 1 1.8204 -0.7982 -2.5397 31 1 2.4712 -2.8120 -3.8327 32 1 4.1399 -2.2022 -3.9421 33 1 3.3252 -0.1909 -5.1427 34 1 1.6568 -0.8012 -5.0328 35 1 4.9476 -1.2664 -6.5975 36 1 5.2998 -2.5946 -8.6403 37 1 1.2976 -4.0560 -8.3762 38 1 0.9456 -2.7181 -6.3395 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491675614.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:12 Heat of formation + Delta-G solvation = -19.842035 kcal Electronic energy + Delta-G solvation = -21528.014588 eV Core-core repulsion = 18057.849386 eV Total energy + Delta-G solvation = -3470.165202 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.122 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.87889 -40.58984 -40.03698 -37.15109 -35.62910 -33.98754 -32.97964 -32.04710 -31.78300 -28.50143 -27.74728 -26.14512 -23.97178 -23.55767 -21.81822 -20.53991 -19.64282 -18.62419 -18.36139 -17.84878 -17.40015 -16.70593 -16.57812 -16.45211 -16.22960 -15.87477 -15.26077 -15.01300 -14.46584 -14.37591 -14.31968 -14.04718 -13.92095 -13.87557 -13.47019 -13.00487 -12.77768 -12.69950 -12.44947 -12.34570 -12.16096 -11.95238 -11.92626 -11.49885 -11.15076 -11.04055 -10.59765 -10.26009 -10.02920 -9.79399 -9.46691 -8.29998 -5.89879 0.18281 0.31436 1.38669 1.43029 1.52277 1.95044 2.19236 2.35537 2.42171 2.63138 3.07614 3.26836 3.32665 3.80566 3.81788 3.93117 4.00546 4.08160 4.16538 4.39488 4.39775 4.41043 4.59987 4.72281 4.77724 4.89083 4.97408 5.00907 5.03185 5.16527 5.19103 5.26012 5.31654 5.47336 5.49171 5.50075 5.68022 5.98051 6.09978 6.48781 7.17930 7.19722 7.48170 8.05464 8.68182 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.028720 B = 0.002981 C = 0.002823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.700321 B = 9389.809811 C = 9916.346600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.152 4.152 3 C 0.233 3.767 4 N -0.456 5.456 5 C -0.355 4.355 6 H 0.072 0.928 7 C 0.004 3.996 8 N -0.872 5.872 9 Si 0.980 3.020 10 H -0.267 1.267 11 H -0.273 1.273 12 H -0.282 1.282 13 C 0.436 3.564 14 O -0.634 6.634 15 C -0.119 4.119 16 C -0.084 4.084 17 C -0.071 4.071 18 C -0.093 4.093 19 C -0.093 4.093 20 C -0.156 4.156 21 C 0.066 3.934 22 F -0.151 7.151 23 C -0.158 4.158 24 C -0.096 4.096 25 H 0.232 0.768 26 H 0.090 0.910 27 H 0.103 0.897 28 H 0.271 0.729 29 H 0.109 0.891 30 H 0.091 0.909 31 H 0.043 0.957 32 H 0.053 0.947 33 H 0.096 0.904 34 H 0.088 0.912 35 H 0.151 0.849 36 H 0.149 0.851 37 H 0.147 0.853 38 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.607 5.608 -15.940 16.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.266 4.266 2 C -0.154 4.154 3 C 0.111 3.889 4 N -0.174 5.174 5 C -0.483 4.483 6 H 0.089 0.911 7 C -0.199 4.199 8 N -0.509 5.509 9 Si 0.804 3.196 10 H -0.192 1.192 11 H -0.198 1.198 12 H -0.207 1.207 13 C 0.227 3.773 14 O -0.521 6.521 15 C -0.158 4.158 16 C -0.122 4.122 17 C -0.108 4.108 18 C -0.093 4.093 19 C -0.111 4.111 20 C -0.175 4.175 21 C 0.047 3.953 22 F -0.130 7.130 23 C -0.176 4.176 24 C -0.114 4.114 25 H 0.248 0.752 26 H 0.108 0.892 27 H 0.121 0.879 28 H 0.081 0.919 29 H 0.127 0.873 30 H 0.109 0.891 31 H 0.062 0.938 32 H 0.072 0.928 33 H 0.114 0.886 34 H 0.106 0.894 35 H 0.169 0.831 36 H 0.167 0.833 37 H 0.165 0.835 38 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -0.490 5.139 -15.863 16.682 hybrid contribution 0.092 -0.914 0.916 1.297 sum -0.399 4.225 -14.947 15.537 Atomic orbital electron populations 1.25124 0.96349 1.00556 1.04567 1.23475 0.95012 0.99745 0.97150 1.18331 0.84547 0.83427 1.02600 1.43954 1.56152 1.12212 1.05103 1.19510 1.31727 1.11461 0.85605 0.91053 1.25903 0.95435 0.97547 1.01025 1.70162 1.19772 1.35795 1.25124 0.85209 0.78905 0.78142 0.77329 1.19187 1.19770 1.20743 1.21291 0.82677 0.87690 0.85658 1.90477 1.52997 1.21901 1.86765 1.21561 1.03452 0.99316 0.91509 1.21148 1.01375 0.97611 0.92092 1.20618 1.03816 0.97368 0.89018 1.20203 0.94015 0.98118 0.97000 1.21225 0.97384 0.98530 0.93941 1.21369 0.99453 0.98255 0.98416 1.17991 0.96173 0.95495 0.85594 1.91461 1.95799 1.75604 1.50158 1.21348 0.96671 1.02282 0.97337 1.21212 1.00206 0.95085 0.94920 0.75187 0.89214 0.87901 0.91869 0.87307 0.89066 0.93826 0.92818 0.88561 0.89369 0.83114 0.83282 0.83519 0.83672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -9.40 19.25 74.32 1.43 -7.97 16 2 C -0.15 -6.42 10.88 31.12 0.34 -6.08 16 3 C 0.23 9.83 4.91 84.57 0.42 10.25 16 4 N -0.46 -22.89 2.60 -645.43 -1.68 -24.57 16 5 C -0.36 -20.01 9.33 84.04 0.78 -19.22 16 6 H 0.07 4.36 7.38 -2.91 -0.02 4.34 16 7 C 0.00 0.23 4.87 84.93 0.41 0.64 16 8 N -0.87 -45.01 9.48 21.66 0.21 -44.80 16 9 Si 0.98 41.96 29.60 68.60 2.03 44.00 16 10 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 11 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 12 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 13 C 0.44 20.84 7.56 87.66 0.66 21.50 16 14 O -0.63 -35.83 15.63 -3.06 -0.05 -35.88 16 15 C -0.12 -3.89 4.31 29.85 0.13 -3.76 16 16 C -0.08 -2.48 4.49 30.59 0.14 -2.34 16 17 C -0.07 -1.42 5.34 29.85 0.16 -1.26 16 18 C -0.09 -1.94 5.13 -19.86 -0.10 -2.04 16 19 C -0.09 -1.80 9.70 22.26 0.22 -1.59 16 20 C -0.16 -3.11 10.03 22.31 0.22 -2.88 16 21 C 0.07 1.48 7.30 22.38 0.16 1.64 16 22 F -0.15 -3.56 17.27 44.97 0.78 -2.79 16 23 C -0.16 -3.24 10.03 22.31 0.22 -3.02 16 24 C -0.10 -1.96 9.70 22.26 0.22 -1.75 16 25 H 0.23 6.75 7.80 -4.43 -0.03 6.72 16 26 H 0.09 4.08 6.44 -2.39 -0.02 4.06 16 27 H 0.10 3.36 6.69 -2.39 -0.02 3.35 16 28 H 0.27 13.32 8.31 -92.71 -0.77 12.55 16 29 H 0.11 2.86 7.41 -2.39 -0.02 2.85 16 30 H 0.09 2.83 7.50 -2.39 -0.02 2.81 16 31 H 0.04 1.48 8.10 -2.38 -0.02 1.46 16 32 H 0.05 1.73 8.10 -2.39 -0.02 1.71 16 33 H 0.10 1.53 8.09 -2.39 -0.02 1.51 16 34 H 0.09 1.55 8.08 -2.39 -0.02 1.53 16 35 H 0.15 2.30 8.06 -2.91 -0.02 2.27 16 36 H 0.15 2.34 8.06 -2.91 -0.02 2.32 16 37 H 0.15 2.46 8.06 -2.91 -0.02 2.44 16 38 H 0.15 2.50 8.06 -2.91 -0.02 2.48 16 Total: -1.00 -69.70 334.85 7.75 -61.95 By element: Atomic # 1 Polarization: 18.93 SS G_CDS: 1.06 Total: 19.98 kcal Atomic # 6 Polarization: -23.30 SS G_CDS: 5.41 Total: -17.89 kcal Atomic # 7 Polarization: -67.90 SS G_CDS: -1.47 Total: -69.37 kcal Atomic # 8 Polarization: -35.83 SS G_CDS: -0.05 Total: -35.88 kcal Atomic # 9 Polarization: -3.56 SS G_CDS: 0.78 Total: -2.79 kcal Atomic # 14 Polarization: 41.96 SS G_CDS: 2.03 Total: 44.00 kcal Total: -69.70 7.75 -61.95 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491675614.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.108 kcal (2) G-P(sol) polarization free energy of solvation -69.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds