Wall clock time and date at job start Tue Mar 31 2020 05:55:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 N 1.46494 * 109.47271 * 308.60707 * 3 2 1 5 5 C 1.36938 * 120.00423 * 264.39176 * 4 3 2 6 6 H 1.07998 * 120.00221 * 198.54963 * 5 4 3 7 7 C 1.38818 * 119.99800 * 18.54125 * 5 4 3 8 8 N 1.31621 * 119.99648 * 11.34801 * 7 5 4 9 9 Si 1.86798 * 120.00007 * 191.34024 * 7 5 4 10 10 H 1.48500 * 109.46802 * 84.98263 * 9 7 5 11 11 H 1.48496 * 109.47146 * 204.98388 * 9 7 5 12 12 H 1.48495 * 109.47197 * 324.98355 * 9 7 5 13 13 C 1.46498 * 120.00007 * 84.38791 * 4 3 2 14 14 C 1.52998 * 109.47395 * 270.00346 * 13 4 3 15 15 C 1.53001 * 109.47011 * 179.97438 * 14 13 4 16 16 C 1.50710 * 109.46872 * 179.97438 * 15 14 13 17 17 O 1.21277 * 119.99736 * 0.02562 * 16 15 14 18 18 C 1.47011 * 119.99787 * 179.97438 * 16 15 14 19 19 C 1.39936 * 120.14791 * 359.72486 * 18 16 15 20 20 C 1.37747 * 119.85457 * 179.74091 * 19 18 16 21 21 C 1.38720 * 120.14244 * 0.53825 * 20 19 18 22 22 F 1.35101 * 119.85267 * 179.69915 * 21 20 19 23 23 C 1.38716 * 120.29440 * 359.71855 * 21 20 19 24 24 C 1.37740 * 120.14727 * 0.02562 * 23 21 20 25 25 H 4.40642 * 5.51398 * 179.97438 * 4 1 2 26 26 H 1.09005 * 109.46817 * 188.61145 * 3 2 1 27 27 H 1.08996 * 109.47210 * 68.61553 * 3 2 1 28 28 H 0.97002 * 119.99373 * 179.97438 * 8 7 5 29 29 H 1.09006 * 109.47482 * 149.99987 * 13 4 3 30 30 H 1.09006 * 109.46958 * 30.00450 * 13 4 3 31 31 H 1.08996 * 109.47298 * 59.99386 * 14 13 4 32 32 H 1.08998 * 109.47004 * 299.99724 * 14 13 4 33 33 H 1.09003 * 109.47344 * 60.00278 * 15 14 13 34 34 H 1.09000 * 109.47457 * 299.99381 * 15 14 13 35 35 H 1.08005 * 120.07708 * 0.02562 * 19 18 16 36 36 H 1.08004 * 119.92934 * 180.25525 * 20 19 18 37 37 H 1.07995 * 119.92504 * 180.02562 * 23 21 20 38 38 H 1.08004 * 120.07710 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1347 -0.8609 1.0793 5 6 3.4720 -0.3173 2.2900 6 1 4.0997 -0.8693 2.9739 7 6 3.0073 0.9436 2.6383 8 7 2.0710 1.5223 1.9166 9 14 3.7107 1.8188 4.1312 10 1 4.9507 2.5384 3.7444 11 1 2.7152 2.7912 4.6495 12 1 4.0252 0.8225 5.1864 13 6 3.2626 -2.3043 0.8634 14 6 1.9537 -2.9958 1.2502 15 6 2.0871 -4.5031 1.0241 16 6 0.7980 -5.1843 1.4056 17 8 -0.1355 -4.5286 1.8173 18 6 0.6719 -6.6433 1.2777 19 6 1.7448 -7.4020 0.7965 20 6 1.6218 -8.7694 0.6842 21 6 0.4339 -9.3932 1.0362 22 9 0.3176 -10.7340 0.9179 23 6 -0.6354 -8.6465 1.5088 24 6 -0.5238 -7.2790 1.6309 25 1 -1.0499 0.0000 0.0003 26 1 3.0088 1.0170 0.1539 27 1 3.0095 -0.3739 -0.9569 28 1 1.7460 2.4032 2.1603 29 1 4.0744 -2.6932 1.4782 30 1 3.4785 -2.4967 -0.1876 31 1 1.1419 -2.6069 0.6355 32 1 1.7379 -2.8033 2.3011 33 1 2.8990 -4.8922 1.6386 34 1 2.3027 -4.6952 -0.0270 35 1 2.6689 -6.9171 0.5183 36 1 2.4505 -9.3566 0.3169 37 1 -1.5573 -9.1383 1.7815 38 1 -1.3571 -6.6987 1.9986 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491816705.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:16 Heat of formation + Delta-G solvation = 19.855587 kcal Electronic energy + Delta-G solvation = -21533.738647 eV Core-core repulsion = 18065.294863 eV Total energy + Delta-G solvation = -3468.443784 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.122 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.30029 -40.09035 -38.17034 -36.32674 -33.32960 -31.67735 -31.43952 -31.23135 -30.29413 -26.87007 -25.88649 -24.06773 -23.32359 -22.18139 -20.38943 -19.63601 -18.10433 -17.39893 -16.74452 -16.59730 -16.31263 -15.98874 -15.33101 -15.12640 -14.82060 -14.41986 -13.98156 -13.80191 -13.54103 -13.37768 -13.09993 -12.97021 -12.83375 -12.32912 -11.76857 -11.43383 -11.39372 -11.22409 -10.98596 -10.83300 -10.71508 -10.21989 -10.10781 -9.82706 -9.57350 -9.53013 -9.05914 -8.90407 -8.71688 -8.27956 -6.92524 -5.71228 -3.18398 0.30526 0.87898 2.26871 3.39384 3.39874 3.45330 3.47127 3.81407 3.96468 4.27769 4.33113 4.48220 4.48664 4.59176 4.86851 4.88902 5.17658 5.31070 5.44145 5.45269 5.52883 5.57983 5.69645 5.75370 5.82461 5.94083 5.97119 6.10979 6.23149 6.42965 6.44717 6.47600 6.79660 6.92048 7.20801 7.40928 7.57275 7.63119 7.76270 8.36746 9.18590 9.29743 9.82520 10.28189 11.31180 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.026623 B = 0.003044 C = 0.002966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.460336 B = 9196.974171 C = 9438.980958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.311 4.311 2 C -0.087 4.087 3 C 0.266 3.734 4 N -0.589 5.589 5 C -0.257 4.257 6 H 0.074 0.926 7 C -0.001 4.001 8 N -0.898 5.898 9 Si 0.907 3.093 10 H -0.287 1.287 11 H -0.292 1.292 12 H -0.281 1.281 13 C 0.150 3.850 14 C -0.132 4.132 15 C -0.163 4.163 16 C 0.390 3.610 17 O -0.439 6.439 18 C -0.173 4.173 19 C -0.044 4.044 20 C -0.167 4.167 21 C 0.121 3.879 22 F -0.137 7.137 23 C -0.167 4.167 24 C -0.037 4.037 25 H 0.187 0.813 26 H 0.108 0.892 27 H 0.030 0.970 28 H 0.254 0.746 29 H 0.047 0.953 30 H 0.039 0.961 31 H 0.064 0.936 32 H 0.066 0.934 33 H 0.095 0.905 34 H 0.094 0.906 35 H 0.146 0.854 36 H 0.141 0.859 37 H 0.140 0.860 38 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.440 -19.593 -4.411 20.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.330 4.330 2 C -0.090 4.090 3 C 0.140 3.860 4 N -0.309 5.309 5 C -0.386 4.386 6 H 0.092 0.908 7 C -0.199 4.199 8 N -0.543 5.543 9 Si 0.738 3.262 10 H -0.214 1.214 11 H -0.218 1.218 12 H -0.207 1.207 13 C 0.023 3.977 14 C -0.172 4.172 15 C -0.201 4.201 16 C 0.267 3.733 17 O -0.313 6.313 18 C -0.174 4.174 19 C -0.062 4.062 20 C -0.186 4.186 21 C 0.102 3.898 22 F -0.116 7.116 23 C -0.186 4.186 24 C -0.055 4.055 25 H 0.205 0.795 26 H 0.125 0.875 27 H 0.048 0.952 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.057 0.943 31 H 0.083 0.917 32 H 0.085 0.915 33 H 0.113 0.887 34 H 0.112 0.888 35 H 0.164 0.836 36 H 0.159 0.841 37 H 0.158 0.842 38 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -0.949 -19.104 -4.144 19.571 hybrid contribution -0.261 0.087 0.985 1.022 sum -1.210 -19.017 -3.159 19.316 Atomic orbital electron populations 1.24152 0.95340 1.06563 1.06960 1.24357 0.95299 0.94908 0.94479 1.17968 0.82716 0.97570 0.87701 1.44135 1.74813 1.00395 1.11545 1.19260 1.24628 1.00039 0.94713 0.90780 1.24998 0.97188 0.99152 0.98544 1.70021 1.28202 1.16026 1.40043 0.86226 0.78074 0.79470 0.82451 1.21430 1.21826 1.20700 1.20905 0.94280 0.84874 0.97647 1.22167 1.01658 0.90049 1.03345 1.22094 0.95926 0.99097 1.02990 1.22652 0.89755 0.86940 0.73979 1.90568 1.40404 1.67081 1.33253 1.20870 0.95384 0.96419 1.04767 1.21396 0.98368 0.92585 0.93848 1.21140 0.97302 0.95621 1.04506 1.18049 0.95280 0.77137 0.99341 1.91518 1.96505 1.30075 1.93458 1.21134 0.99063 0.94468 1.03902 1.21355 0.97239 0.93326 0.93569 0.79542 0.87471 0.95207 0.93532 0.93484 0.94309 0.91692 0.91520 0.88706 0.88821 0.83630 0.84073 0.84208 0.83841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.31 -7.44 19.25 29.55 0.57 -6.87 16 2 C -0.09 -2.19 10.58 -37.12 -0.39 -2.58 16 3 C 0.27 6.38 5.45 -6.83 -0.04 6.35 16 4 N -0.59 -14.31 2.50 -176.57 -0.44 -14.75 16 5 C -0.26 -6.87 9.72 -15.06 -0.15 -7.01 16 6 H 0.07 1.92 7.84 -52.49 -0.41 1.51 16 7 C 0.00 -0.02 5.12 -17.43 -0.09 -0.11 16 8 N -0.90 -25.70 8.96 55.49 0.50 -25.20 16 9 Si 0.91 21.72 29.57 -169.99 -5.03 16.69 16 10 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 11 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 12 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 13 C 0.15 2.90 5.70 -4.04 -0.02 2.88 16 14 C -0.13 -2.48 4.69 -26.73 -0.13 -2.61 16 15 C -0.16 -2.14 4.31 -27.88 -0.12 -2.26 16 16 C 0.39 5.53 7.11 -30.75 -0.22 5.31 16 17 O -0.44 -8.04 15.97 5.56 0.09 -7.95 16 18 C -0.17 -1.94 5.87 -105.07 -0.62 -2.56 16 19 C -0.04 -0.38 9.46 -39.13 -0.37 -0.75 16 20 C -0.17 -1.36 10.01 -39.58 -0.40 -1.76 16 21 C 0.12 1.12 7.31 -39.23 -0.29 0.84 16 22 F -0.14 -1.33 17.26 2.25 0.04 -1.29 16 23 C -0.17 -1.52 10.01 -39.59 -0.40 -1.92 16 24 C -0.04 -0.39 9.59 -39.12 -0.38 -0.76 16 25 H 0.19 3.86 7.80 -54.10 -0.42 3.43 16 26 H 0.11 2.82 6.19 -51.93 -0.32 2.50 16 27 H 0.03 0.63 7.97 -51.93 -0.41 0.21 16 28 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 29 H 0.05 0.85 8.03 -51.93 -0.42 0.44 16 30 H 0.04 0.66 7.95 -51.93 -0.41 0.25 16 31 H 0.06 1.39 7.17 -51.93 -0.37 1.02 16 32 H 0.07 1.47 8.10 -51.93 -0.42 1.05 16 33 H 0.09 1.03 8.09 -51.93 -0.42 0.61 16 34 H 0.09 1.00 8.08 -51.93 -0.42 0.58 16 35 H 0.15 0.91 7.05 -52.48 -0.37 0.54 16 36 H 0.14 0.83 8.06 -52.48 -0.42 0.41 16 37 H 0.14 1.00 8.06 -52.49 -0.42 0.57 16 38 H 0.14 1.52 7.65 -52.48 -0.40 1.12 16 LS Contribution 336.10 15.07 5.06 5.06 Total: -1.00 -31.97 336.10 -7.59 -39.55 By element: Atomic # 1 Polarization: 6.48 SS G_CDS: -4.78 Total: 1.70 kcal Atomic # 6 Polarization: -10.79 SS G_CDS: -3.03 Total: -13.81 kcal Atomic # 7 Polarization: -40.01 SS G_CDS: 0.05 Total: -39.96 kcal Atomic # 8 Polarization: -8.04 SS G_CDS: 0.09 Total: -7.95 kcal Atomic # 9 Polarization: -1.33 SS G_CDS: 0.04 Total: -1.29 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.03 Total: 16.69 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -31.97 -7.59 -39.55 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491816705.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.408 kcal (2) G-P(sol) polarization free energy of solvation -31.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.553 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds