Wall clock time and date at job start Tue Mar 31 2020 05:55:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 N 1.46494 * 109.47271 * 308.60707 * 3 2 1 5 5 C 1.36938 * 120.00423 * 264.39176 * 4 3 2 6 6 H 1.07998 * 120.00221 * 198.54963 * 5 4 3 7 7 C 1.38818 * 119.99800 * 18.54125 * 5 4 3 8 8 N 1.31621 * 119.99648 * 11.34801 * 7 5 4 9 9 Si 1.86798 * 120.00007 * 191.34024 * 7 5 4 10 10 H 1.48500 * 109.46802 * 84.98263 * 9 7 5 11 11 H 1.48496 * 109.47146 * 204.98388 * 9 7 5 12 12 H 1.48495 * 109.47197 * 324.98355 * 9 7 5 13 13 C 1.46498 * 120.00007 * 84.38791 * 4 3 2 14 14 C 1.52998 * 109.47395 * 270.00346 * 13 4 3 15 15 C 1.53001 * 109.47011 * 179.97438 * 14 13 4 16 16 C 1.50710 * 109.46872 * 179.97438 * 15 14 13 17 17 O 1.21277 * 119.99736 * 0.02562 * 16 15 14 18 18 C 1.47011 * 119.99787 * 179.97438 * 16 15 14 19 19 C 1.39936 * 120.14791 * 359.72486 * 18 16 15 20 20 C 1.37747 * 119.85457 * 179.74091 * 19 18 16 21 21 C 1.38720 * 120.14244 * 0.53825 * 20 19 18 22 22 F 1.35101 * 119.85267 * 179.69915 * 21 20 19 23 23 C 1.38716 * 120.29440 * 359.71855 * 21 20 19 24 24 C 1.37740 * 120.14727 * 0.02562 * 23 21 20 25 25 H 4.40642 * 5.51398 * 179.97438 * 4 1 2 26 26 H 1.09005 * 109.46817 * 188.61145 * 3 2 1 27 27 H 1.08996 * 109.47210 * 68.61553 * 3 2 1 28 28 H 0.97002 * 119.99373 * 179.97438 * 8 7 5 29 29 H 1.09006 * 109.47482 * 149.99987 * 13 4 3 30 30 H 1.09006 * 109.46958 * 30.00450 * 13 4 3 31 31 H 1.08996 * 109.47298 * 59.99386 * 14 13 4 32 32 H 1.08998 * 109.47004 * 299.99724 * 14 13 4 33 33 H 1.09003 * 109.47344 * 60.00278 * 15 14 13 34 34 H 1.09000 * 109.47457 * 299.99381 * 15 14 13 35 35 H 1.08005 * 120.07708 * 0.02562 * 19 18 16 36 36 H 1.08004 * 119.92934 * 180.25525 * 20 19 18 37 37 H 1.07995 * 119.92504 * 180.02562 * 23 21 20 38 38 H 1.08004 * 120.07710 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1347 -0.8609 1.0793 5 6 3.4720 -0.3173 2.2900 6 1 4.0997 -0.8693 2.9739 7 6 3.0073 0.9436 2.6383 8 7 2.0710 1.5223 1.9166 9 14 3.7107 1.8188 4.1312 10 1 4.9507 2.5384 3.7444 11 1 2.7152 2.7912 4.6495 12 1 4.0252 0.8225 5.1864 13 6 3.2626 -2.3043 0.8634 14 6 1.9537 -2.9958 1.2502 15 6 2.0871 -4.5031 1.0241 16 6 0.7980 -5.1843 1.4056 17 8 -0.1355 -4.5286 1.8173 18 6 0.6719 -6.6433 1.2777 19 6 1.7448 -7.4020 0.7965 20 6 1.6218 -8.7694 0.6842 21 6 0.4339 -9.3932 1.0362 22 9 0.3176 -10.7340 0.9179 23 6 -0.6354 -8.6465 1.5088 24 6 -0.5238 -7.2790 1.6309 25 1 -1.0499 0.0000 0.0003 26 1 3.0088 1.0170 0.1539 27 1 3.0095 -0.3739 -0.9569 28 1 1.7460 2.4032 2.1603 29 1 4.0744 -2.6932 1.4782 30 1 3.4785 -2.4967 -0.1876 31 1 1.1419 -2.6069 0.6355 32 1 1.7379 -2.8033 2.3011 33 1 2.8990 -4.8922 1.6386 34 1 2.3027 -4.6952 -0.0270 35 1 2.6689 -6.9171 0.5183 36 1 2.4505 -9.3566 0.3169 37 1 -1.5573 -9.1383 1.7815 38 1 -1.3571 -6.6987 1.9986 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491816705.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:15 Heat of formation + Delta-G solvation = 3.315420 kcal Electronic energy + Delta-G solvation = -21534.455882 eV Core-core repulsion = 18065.294863 eV Total energy + Delta-G solvation = -3469.161020 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.122 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -50.02529 -41.06845 -39.10428 -38.09930 -34.82624 -33.40226 -32.77247 -32.09847 -31.70564 -28.33577 -27.78149 -25.29385 -24.14508 -23.48287 -21.92140 -20.67862 -19.32840 -18.83402 -18.26874 -17.66116 -17.40195 -16.85354 -16.75550 -16.52894 -15.87802 -15.56477 -15.46462 -15.09915 -14.83915 -14.61105 -14.40478 -14.13791 -13.85749 -13.37841 -13.24427 -13.11728 -12.93537 -12.70742 -12.47736 -12.37298 -12.16412 -12.00266 -11.93803 -11.45086 -10.88733 -10.73421 -10.60763 -10.20925 -10.20650 -9.83241 -8.86611 -7.77055 -5.24124 -0.51472 0.20208 1.32761 1.49186 1.49522 1.57227 2.36699 2.54463 2.62095 2.63131 2.96497 3.13513 3.36436 3.65898 3.84383 3.85151 4.09525 4.12702 4.20161 4.23440 4.25440 4.42991 4.76809 4.77606 4.86885 4.90368 4.91903 4.98131 5.02516 5.06357 5.12816 5.32899 5.38666 5.46359 5.58729 5.69122 5.75271 5.76546 6.36760 6.58476 7.16647 7.38331 7.89570 8.30140 9.23251 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.026623 B = 0.003044 C = 0.002966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.460336 B = 9196.974171 C = 9438.980958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.318 4.318 2 C -0.112 4.112 3 C 0.266 3.734 4 N -0.605 5.605 5 C -0.259 4.259 6 H 0.079 0.921 7 C -0.056 4.056 8 N -0.925 5.925 9 Si 0.967 3.033 10 H -0.281 1.281 11 H -0.304 1.304 12 H -0.274 1.274 13 C 0.146 3.854 14 C -0.118 4.118 15 C -0.155 4.155 16 C 0.393 3.607 17 O -0.499 6.499 18 C -0.192 4.192 19 C -0.031 4.031 20 C -0.160 4.160 21 C 0.117 3.883 22 F -0.139 7.139 23 C -0.169 4.169 24 C -0.050 4.050 25 H 0.211 0.789 26 H 0.080 0.920 27 H 0.063 0.937 28 H 0.244 0.756 29 H 0.064 0.936 30 H 0.071 0.929 31 H 0.030 0.970 32 H 0.021 0.979 33 H 0.128 0.872 34 H 0.132 0.868 35 H 0.178 0.822 36 H 0.171 0.829 37 H 0.155 0.845 38 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.478 -22.133 -5.167 22.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.337 4.337 2 C -0.115 4.115 3 C 0.140 3.860 4 N -0.325 5.325 5 C -0.389 4.389 6 H 0.097 0.903 7 C -0.251 4.251 8 N -0.571 5.571 9 Si 0.796 3.204 10 H -0.207 1.207 11 H -0.232 1.232 12 H -0.199 1.199 13 C 0.020 3.980 14 C -0.159 4.159 15 C -0.192 4.192 16 C 0.273 3.727 17 O -0.377 6.377 18 C -0.193 4.193 19 C -0.049 4.049 20 C -0.179 4.179 21 C 0.098 3.902 22 F -0.118 7.118 23 C -0.187 4.187 24 C -0.068 4.068 25 H 0.228 0.772 26 H 0.098 0.902 27 H 0.081 0.919 28 H 0.053 0.947 29 H 0.082 0.918 30 H 0.089 0.911 31 H 0.049 0.951 32 H 0.040 0.960 33 H 0.146 0.854 34 H 0.149 0.851 35 H 0.195 0.805 36 H 0.188 0.812 37 H 0.172 0.828 38 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 1.002 -21.696 -4.913 22.267 hybrid contribution -0.855 0.744 1.180 1.637 sum 0.147 -20.951 -3.732 21.282 Atomic orbital electron populations 1.24870 0.96367 1.05947 1.06493 1.24827 0.96165 0.95505 0.94999 1.17938 0.82319 0.96581 0.89140 1.44376 1.74698 1.02637 1.10822 1.19599 1.23829 1.00054 0.95462 0.90308 1.25690 0.97990 1.00191 1.01204 1.70220 1.29696 1.15703 1.41498 0.85283 0.77119 0.78168 0.79806 1.20719 1.23167 1.19915 1.21155 0.94702 0.82157 0.99948 1.21870 1.00097 0.94297 0.99619 1.22089 0.96473 0.94655 1.05967 1.23081 0.89198 0.88308 0.72069 1.90562 1.42247 1.68494 1.36367 1.20698 0.96797 0.94759 1.07033 1.21684 0.98375 0.92622 0.92178 1.21466 0.97528 0.95586 1.03297 1.18265 0.95792 0.77062 0.99113 1.91519 1.96556 1.30263 1.93429 1.21245 0.99980 0.93820 1.03663 1.21356 0.97175 0.94010 0.94249 0.77191 0.90235 0.91887 0.94668 0.91802 0.91122 0.95071 0.95980 0.85369 0.85050 0.80500 0.81160 0.82760 0.85025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.32 -15.41 19.25 74.32 1.43 -13.98 16 2 C -0.11 -5.68 10.58 31.13 0.33 -5.35 16 3 C 0.27 12.78 5.45 84.58 0.46 13.24 16 4 N -0.61 -29.11 2.50 -712.55 -1.78 -30.90 16 5 C -0.26 -13.84 9.72 84.03 0.82 -13.02 16 6 H 0.08 4.03 7.84 -2.91 -0.02 4.01 16 7 C -0.06 -3.10 5.12 84.86 0.43 -2.67 16 8 N -0.92 -54.27 8.96 21.65 0.19 -54.08 16 9 Si 0.97 45.26 29.57 68.60 2.03 47.29 16 10 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 11 H -0.30 -14.76 7.11 99.48 0.71 -14.05 16 12 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 13 C 0.15 5.33 5.70 86.38 0.49 5.83 16 14 C -0.12 -4.40 4.69 30.59 0.14 -4.26 16 15 C -0.15 -3.63 4.31 29.85 0.13 -3.50 16 16 C 0.39 10.84 7.11 27.99 0.20 11.04 16 17 O -0.50 -19.05 15.97 -3.02 -0.05 -19.10 16 18 C -0.19 -3.97 5.87 -20.15 -0.12 -4.09 16 19 C -0.03 -0.41 9.46 22.57 0.21 -0.19 16 20 C -0.16 -1.97 10.01 22.27 0.22 -1.74 16 21 C 0.12 1.85 7.31 22.50 0.16 2.02 16 22 F -0.14 -2.34 17.26 44.97 0.78 -1.56 16 23 C -0.17 -2.84 10.01 22.27 0.22 -2.61 16 24 C -0.05 -1.03 9.59 22.57 0.22 -0.81 16 25 H 0.21 8.71 7.80 -4.42 -0.03 8.68 16 26 H 0.08 4.27 6.19 -2.38 -0.01 4.26 16 27 H 0.06 2.55 7.97 -2.39 -0.02 2.53 16 28 H 0.24 14.25 8.31 -92.71 -0.77 13.48 16 29 H 0.06 2.13 8.03 -2.38 -0.02 2.11 16 30 H 0.07 2.15 7.95 -2.38 -0.02 2.13 16 31 H 0.03 1.34 7.17 -2.39 -0.02 1.33 16 32 H 0.02 0.98 8.10 -2.39 -0.02 0.96 16 33 H 0.13 2.22 8.09 -2.39 -0.02 2.20 16 34 H 0.13 2.16 8.08 -2.39 -0.02 2.14 16 35 H 0.18 1.18 7.05 -2.91 -0.02 1.16 16 36 H 0.17 1.12 8.06 -2.91 -0.02 1.09 16 37 H 0.15 2.02 8.06 -2.91 -0.02 1.99 16 38 H 0.13 2.96 7.65 -2.91 -0.02 2.94 16 Total: -1.00 -72.69 336.10 7.58 -65.12 By element: Atomic # 1 Polarization: 12.28 SS G_CDS: 1.06 Total: 13.34 kcal Atomic # 6 Polarization: -25.47 SS G_CDS: 5.36 Total: -20.11 kcal Atomic # 7 Polarization: -83.39 SS G_CDS: -1.59 Total: -84.98 kcal Atomic # 8 Polarization: -19.05 SS G_CDS: -0.05 Total: -19.10 kcal Atomic # 9 Polarization: -2.34 SS G_CDS: 0.78 Total: -1.56 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.29 kcal Total: -72.69 7.58 -65.12 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491816705.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.431 kcal (2) G-P(sol) polarization free energy of solvation -72.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.115 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds