Wall clock time and date at job start Tue Mar 31 2020 05:56:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50699 * 119.99846 * 2 1 4 4 N 1.46506 * 109.46928 * 124.99884 * 3 2 1 5 5 C 1.46496 * 119.99759 * 90.00349 * 4 3 2 6 6 C 1.50695 * 109.47390 * 89.99689 * 5 4 3 7 7 H 1.08001 * 120.00425 * 0.02562 * 6 5 4 8 8 C 1.37885 * 119.99997 * 179.97438 * 6 5 4 9 9 N 1.31507 * 119.99974 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 119.99547 * 180.02562 * 8 6 5 11 11 H 1.48498 * 109.47248 * 60.00594 * 10 8 6 12 12 H 1.48505 * 109.46948 * 179.97438 * 10 8 6 13 13 H 1.48496 * 109.47363 * 299.99678 * 10 8 6 14 14 C 1.34771 * 120.00084 * 270.00021 * 4 3 2 15 15 O 1.21693 * 119.99953 * 180.02562 * 14 4 3 16 16 C 1.46429 * 119.99982 * 359.97438 * 14 4 3 17 17 C 1.34807 * 119.99875 * 179.97438 * 16 14 4 18 18 C 1.47213 * 120.00131 * 180.02562 * 17 16 14 19 19 C 1.39861 * 120.15842 * 180.02562 * 18 17 16 20 20 C 1.37883 * 119.87504 * 180.02562 * 19 18 17 21 21 C 1.38387 * 120.19962 * 359.97104 * 20 19 18 22 22 C 1.38589 * 120.31967 * 0.02562 * 21 20 19 23 23 F 1.35104 * 119.93900 * 180.02562 * 22 21 20 24 24 C 1.38149 * 120.12001 * 359.76442 * 22 21 20 25 25 H 1.07994 * 120.00398 * 359.97438 * 1 2 3 26 26 H 1.08007 * 119.99861 * 180.02562 * 1 2 3 27 27 H 1.08001 * 120.00021 * 180.02562 * 2 1 3 28 28 H 1.09004 * 109.47103 * 5.00074 * 3 2 1 29 29 H 1.09000 * 109.47247 * 244.99952 * 3 2 1 30 30 H 1.09001 * 109.47057 * 210.00204 * 5 4 3 31 31 H 1.08999 * 109.47333 * 329.99764 * 5 4 3 32 32 H 0.96998 * 119.99696 * 179.97438 * 9 8 6 33 33 H 1.08001 * 120.00307 * 0.02562 * 16 14 4 34 34 H 1.08002 * 120.00343 * 359.97438 * 17 16 14 35 35 H 1.07995 * 120.05840 * 359.97080 * 19 18 17 36 36 H 1.08002 * 119.89689 * 179.97438 * 20 19 18 37 37 H 1.07994 * 119.83614 * 180.02562 * 21 20 19 38 38 H 1.08007 * 120.10045 * 180.25537 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3319 1.1315 5 6 4.3589 0.8257 0.9695 6 6 5.2615 1.9480 0.5260 7 1 4.8587 2.9394 0.3798 8 6 6.6019 1.7095 0.3077 9 7 7.0925 0.5025 0.4862 10 14 7.7208 3.1010 -0.2413 11 1 7.7099 4.1778 0.7812 12 1 9.1049 2.5881 -0.4045 13 1 7.2374 3.6431 -1.5365 14 6 2.5936 1.8222 2.3214 15 8 3.3665 1.8449 3.2611 16 6 1.2293 2.3287 2.4831 17 6 0.8289 2.8187 3.6735 18 6 -0.5429 3.3274 3.8363 19 6 -0.9616 3.8370 5.0697 20 6 -2.2479 4.3115 5.2158 21 6 -3.1252 4.2854 4.1459 22 6 -2.7190 3.7824 2.9201 23 9 -3.5817 3.7611 1.8806 24 6 -1.4319 3.3076 2.7577 25 1 -0.5400 0.9352 0.0004 26 1 -0.5400 -0.9354 0.0004 27 1 1.8500 -0.9353 -0.0004 28 1 1.3585 2.1317 0.0896 29 1 2.6213 1.4026 -0.9314 30 1 4.7141 0.4278 1.9201 31 1 4.3666 0.0352 0.2191 32 1 8.0354 0.3347 0.3323 33 1 0.5434 2.3090 1.6490 34 1 1.5143 2.8373 4.5080 35 1 -0.2789 3.8580 5.9062 36 1 -2.5717 4.7047 6.1682 37 1 -4.1313 4.6590 4.2668 38 1 -1.1143 2.9194 1.8012 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493510511.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:42 Heat of formation + Delta-G solvation = -16.016190 kcal Electronic energy + Delta-G solvation = -21739.043310 eV Core-core repulsion = 18269.044009 eV Total energy + Delta-G solvation = -3469.999301 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.122 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.09948 -39.52063 -38.86237 -35.76028 -34.13460 -33.18943 -32.06498 -30.82235 -29.89952 -27.57898 -25.74344 -24.51381 -23.11371 -22.46938 -20.55547 -19.92485 -18.13777 -17.88939 -16.62328 -16.47874 -16.44196 -16.20589 -15.79738 -15.32481 -14.72170 -14.36017 -14.19900 -14.07939 -13.77830 -13.48982 -13.06578 -12.86503 -12.75539 -12.37307 -12.22273 -11.84292 -11.47788 -11.36753 -11.14544 -11.09585 -10.86723 -10.55070 -10.36117 -10.18656 -9.68625 -9.37390 -9.09945 -9.00198 -8.44377 -8.41202 -7.70566 -6.05366 -4.10370 0.40026 0.94554 1.98092 2.37633 3.31815 3.36171 3.38949 3.43139 3.89029 3.97569 4.01822 4.42708 4.44568 4.54037 4.76249 4.88084 5.02518 5.08088 5.18982 5.26990 5.31487 5.37964 5.60807 5.62723 5.71985 5.81235 5.92827 6.00910 6.04658 6.13932 6.35766 6.52983 6.61845 6.73199 6.84578 7.06618 7.41974 7.49916 7.90681 8.21331 8.35866 8.87178 9.03730 9.54681 11.02688 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.020167 B = 0.003626 C = 0.003350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.085637 B = 7719.794344 C = 8355.182731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.156 4.156 3 C 0.133 3.867 4 N -0.586 5.586 5 C 0.245 3.755 6 C -0.528 4.528 7 H 0.057 0.943 8 C 0.062 3.938 9 N -0.895 5.895 10 Si 0.899 3.101 11 H -0.276 1.276 12 H -0.286 1.286 13 H -0.277 1.277 14 C 0.534 3.466 15 O -0.540 6.540 16 C -0.173 4.173 17 C -0.061 4.061 18 C -0.025 4.025 19 C -0.113 4.113 20 C -0.091 4.091 21 C -0.156 4.156 22 C 0.099 3.901 23 F -0.140 7.140 24 C -0.146 4.146 25 H 0.092 0.908 26 H 0.096 0.904 27 H 0.112 0.888 28 H 0.071 0.929 29 H 0.094 0.906 30 H 0.045 0.955 31 H 0.033 0.967 32 H 0.264 0.736 33 H 0.125 0.875 34 H 0.141 0.859 35 H 0.135 0.865 36 H 0.135 0.865 37 H 0.134 0.866 38 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.556 4.677 4.467 21.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.175 4.175 3 C 0.009 3.991 4 N -0.316 5.316 5 C 0.126 3.874 6 C -0.567 4.567 7 H 0.076 0.924 8 C -0.140 4.140 9 N -0.533 5.533 10 Si 0.726 3.274 11 H -0.202 1.202 12 H -0.212 1.212 13 H -0.202 1.202 14 C 0.323 3.677 15 O -0.419 6.419 16 C -0.194 4.194 17 C -0.080 4.080 18 C -0.026 4.026 19 C -0.131 4.131 20 C -0.109 4.109 21 C -0.174 4.174 22 C 0.080 3.920 23 F -0.119 7.119 24 C -0.164 4.164 25 H 0.111 0.889 26 H 0.114 0.886 27 H 0.130 0.870 28 H 0.090 0.910 29 H 0.112 0.888 30 H 0.063 0.937 31 H 0.051 0.949 32 H 0.074 0.926 33 H 0.143 0.857 34 H 0.158 0.842 35 H 0.153 0.847 36 H 0.152 0.848 37 H 0.152 0.848 38 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -19.948 4.561 4.874 21.036 hybrid contribution 0.435 0.636 -0.718 1.053 sum -19.514 5.197 4.157 20.617 Atomic orbital electron populations 1.23734 0.95679 1.01492 1.02704 1.23545 0.96065 0.99916 0.97955 1.20651 0.92414 0.94155 0.91873 1.48131 1.14503 1.60144 1.08811 1.19320 0.75086 0.94602 0.98343 1.21397 0.93452 0.95918 1.45946 0.92436 1.24930 0.97873 0.95809 0.95410 1.69919 1.14222 1.20235 1.48966 0.86552 0.79513 0.82235 0.79088 1.20158 1.21163 1.20222 1.18115 0.87022 0.79232 0.83378 1.90784 1.55344 1.56271 1.39518 1.23439 0.96946 1.00626 0.98345 1.22252 0.92757 0.94579 0.98453 1.18930 0.93320 0.97339 0.92980 1.21470 0.96402 0.98283 0.96970 1.20951 0.93068 0.98452 0.98460 1.21231 1.01427 1.02742 0.92050 1.17572 0.87963 1.01643 0.84828 1.91511 1.69112 1.94524 1.56720 1.21418 0.92141 1.02322 1.00546 0.88947 0.88592 0.86971 0.91047 0.88791 0.93713 0.94856 0.92629 0.85709 0.84167 0.84665 0.84763 0.84807 0.84339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.30 14.27 29.01 0.41 -1.89 16 2 C -0.16 -2.21 9.85 -36.03 -0.35 -2.56 16 3 C 0.13 2.16 5.56 -5.19 -0.03 2.13 16 4 N -0.59 -12.40 2.44 -178.08 -0.43 -12.83 16 5 C 0.25 6.38 5.16 -5.20 -0.03 6.35 16 6 C -0.53 -14.93 9.39 -34.44 -0.32 -15.25 16 7 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 8 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 9 N -0.89 -26.49 13.29 55.43 0.74 -25.75 16 10 Si 0.90 21.81 29.54 -169.99 -5.02 16.79 16 11 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 12 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 13 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 14 C 0.53 11.25 7.60 -12.97 -0.10 11.15 16 15 O -0.54 -13.62 15.81 5.20 0.08 -13.53 16 16 C -0.17 -2.70 8.61 -37.50 -0.32 -3.03 16 17 C -0.06 -0.84 9.46 -37.15 -0.35 -1.20 16 18 C -0.03 -0.29 5.87 -105.07 -0.62 -0.91 16 19 C -0.11 -1.07 9.79 -39.10 -0.38 -1.45 16 20 C -0.09 -0.73 10.03 -39.66 -0.40 -1.13 16 21 C -0.16 -1.36 10.02 -39.40 -0.39 -1.76 16 22 C 0.10 1.05 7.29 -39.48 -0.29 0.76 16 23 F -0.14 -1.57 17.26 2.25 0.04 -1.53 16 24 C -0.15 -1.62 9.39 -39.04 -0.37 -1.98 16 25 H 0.09 0.94 7.84 -52.49 -0.41 0.53 16 26 H 0.10 1.00 8.06 -52.48 -0.42 0.57 16 27 H 0.11 1.67 8.06 -52.49 -0.42 1.25 16 28 H 0.07 0.98 5.74 -51.93 -0.30 0.68 16 29 H 0.09 1.57 8.07 -51.93 -0.42 1.15 16 30 H 0.04 1.31 7.42 -51.93 -0.39 0.93 16 31 H 0.03 0.87 8.07 -51.93 -0.42 0.45 16 32 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 33 H 0.13 1.62 4.17 -52.49 -0.22 1.40 16 34 H 0.14 2.03 7.52 -52.49 -0.39 1.64 16 35 H 0.14 1.05 8.06 -52.49 -0.42 0.63 16 36 H 0.13 0.70 8.06 -52.49 -0.42 0.28 16 37 H 0.13 0.89 8.06 -52.49 -0.42 0.46 16 38 H 0.14 1.43 6.17 -52.48 -0.32 1.10 16 LS Contribution 338.81 15.07 5.11 5.11 Total: -1.00 -32.73 338.81 -7.66 -40.39 By element: Atomic # 1 Polarization: 4.99 SS G_CDS: -4.53 Total: 0.46 kcal Atomic # 6 Polarization: -5.46 SS G_CDS: -3.64 Total: -9.09 kcal Atomic # 7 Polarization: -38.89 SS G_CDS: 0.30 Total: -38.59 kcal Atomic # 8 Polarization: -13.62 SS G_CDS: 0.08 Total: -13.53 kcal Atomic # 9 Polarization: -1.57 SS G_CDS: 0.04 Total: -1.53 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -32.73 -7.66 -40.39 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493510511.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.371 kcal (2) G-P(sol) polarization free energy of solvation -32.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds