Wall clock time and date at job start Tue Mar 31 2020 05:56:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50699 * 119.99846 * 2 1 4 4 N 1.46506 * 109.46928 * 124.99884 * 3 2 1 5 5 C 1.46496 * 119.99759 * 90.00349 * 4 3 2 6 6 C 1.50695 * 109.47390 * 89.99689 * 5 4 3 7 7 H 1.08001 * 120.00425 * 0.02562 * 6 5 4 8 8 C 1.37885 * 119.99997 * 179.97438 * 6 5 4 9 9 N 1.31507 * 119.99974 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 119.99547 * 180.02562 * 8 6 5 11 11 H 1.48498 * 109.47248 * 60.00594 * 10 8 6 12 12 H 1.48505 * 109.46948 * 179.97438 * 10 8 6 13 13 H 1.48496 * 109.47363 * 299.99678 * 10 8 6 14 14 C 1.34771 * 120.00084 * 270.00021 * 4 3 2 15 15 O 1.21693 * 119.99953 * 180.02562 * 14 4 3 16 16 C 1.46429 * 119.99982 * 359.97438 * 14 4 3 17 17 C 1.34807 * 119.99875 * 179.97438 * 16 14 4 18 18 C 1.47213 * 120.00131 * 180.02562 * 17 16 14 19 19 C 1.39861 * 120.15842 * 180.02562 * 18 17 16 20 20 C 1.37883 * 119.87504 * 180.02562 * 19 18 17 21 21 C 1.38387 * 120.19962 * 359.97104 * 20 19 18 22 22 C 1.38589 * 120.31967 * 0.02562 * 21 20 19 23 23 F 1.35104 * 119.93900 * 180.02562 * 22 21 20 24 24 C 1.38149 * 120.12001 * 359.76442 * 22 21 20 25 25 H 1.07994 * 120.00398 * 359.97438 * 1 2 3 26 26 H 1.08007 * 119.99861 * 180.02562 * 1 2 3 27 27 H 1.08001 * 120.00021 * 180.02562 * 2 1 3 28 28 H 1.09004 * 109.47103 * 5.00074 * 3 2 1 29 29 H 1.09000 * 109.47247 * 244.99952 * 3 2 1 30 30 H 1.09001 * 109.47057 * 210.00204 * 5 4 3 31 31 H 1.08999 * 109.47333 * 329.99764 * 5 4 3 32 32 H 0.96998 * 119.99696 * 179.97438 * 9 8 6 33 33 H 1.08001 * 120.00307 * 0.02562 * 16 14 4 34 34 H 1.08002 * 120.00343 * 359.97438 * 17 16 14 35 35 H 1.07995 * 120.05840 * 359.97080 * 19 18 17 36 36 H 1.08002 * 119.89689 * 179.97438 * 20 19 18 37 37 H 1.07994 * 119.83614 * 180.02562 * 21 20 19 38 38 H 1.08007 * 120.10045 * 180.25537 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3319 1.1315 5 6 4.3589 0.8257 0.9695 6 6 5.2615 1.9480 0.5260 7 1 4.8587 2.9394 0.3798 8 6 6.6019 1.7095 0.3077 9 7 7.0925 0.5025 0.4862 10 14 7.7208 3.1010 -0.2413 11 1 7.7099 4.1778 0.7812 12 1 9.1049 2.5881 -0.4045 13 1 7.2374 3.6431 -1.5365 14 6 2.5936 1.8222 2.3214 15 8 3.3665 1.8449 3.2611 16 6 1.2293 2.3287 2.4831 17 6 0.8289 2.8187 3.6735 18 6 -0.5429 3.3274 3.8363 19 6 -0.9616 3.8370 5.0697 20 6 -2.2479 4.3115 5.2158 21 6 -3.1252 4.2854 4.1459 22 6 -2.7190 3.7824 2.9201 23 9 -3.5817 3.7611 1.8806 24 6 -1.4319 3.3076 2.7577 25 1 -0.5400 0.9352 0.0004 26 1 -0.5400 -0.9354 0.0004 27 1 1.8500 -0.9353 -0.0004 28 1 1.3585 2.1317 0.0896 29 1 2.6213 1.4026 -0.9314 30 1 4.7141 0.4278 1.9201 31 1 4.3666 0.0352 0.2191 32 1 8.0354 0.3347 0.3323 33 1 0.5434 2.3090 1.6490 34 1 1.5143 2.8373 4.5080 35 1 -0.2789 3.8580 5.9062 36 1 -2.5717 4.7047 6.1682 37 1 -4.1313 4.6590 4.2668 38 1 -1.1143 2.9194 1.8012 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493510511.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:41 Heat of formation + Delta-G solvation = -34.270832 kcal Electronic energy + Delta-G solvation = -21739.834891 eV Core-core repulsion = 18269.044009 eV Total energy + Delta-G solvation = -3470.790882 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.122 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -49.88617 -40.87898 -39.90514 -37.29548 -35.41986 -34.84619 -33.68997 -31.56547 -31.01013 -29.40047 -27.07399 -25.99686 -24.39894 -23.48593 -21.78556 -21.04853 -19.52414 -18.93819 -18.59516 -17.75719 -17.42348 -17.17035 -16.81958 -16.58634 -16.28865 -15.94544 -15.51481 -15.02801 -14.80271 -14.67834 -14.35056 -14.22856 -14.01464 -13.59684 -13.49874 -13.30204 -13.02690 -12.76234 -12.58399 -12.41471 -12.21837 -12.15333 -12.07464 -11.73341 -11.32789 -10.83640 -10.65326 -10.32873 -9.85837 -9.57419 -9.26324 -8.23338 -6.38768 -0.54774 0.21448 0.93731 1.30363 1.36567 1.40766 1.48373 2.27613 2.39822 2.48467 2.77473 3.05975 3.18405 3.53539 3.68199 3.90386 4.01113 4.10582 4.13232 4.18989 4.25477 4.37406 4.52058 4.71303 4.77273 4.90566 4.96131 5.06043 5.10696 5.14218 5.18769 5.28399 5.40689 5.53893 5.55306 5.69427 5.79341 5.81994 5.88785 6.04200 6.67177 6.74475 7.25247 7.41890 8.83692 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.020167 B = 0.003626 C = 0.003350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.085637 B = 7719.794344 C = 8355.182731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.188 4.188 3 C 0.132 3.868 4 N -0.593 5.593 5 C 0.262 3.738 6 C -0.546 4.546 7 H 0.054 0.946 8 C 0.008 3.992 9 N -0.928 5.928 10 Si 0.969 3.031 11 H -0.277 1.277 12 H -0.277 1.277 13 H -0.260 1.260 14 C 0.526 3.474 15 O -0.600 6.600 16 C -0.197 4.197 17 C -0.027 4.027 18 C -0.051 4.051 19 C -0.108 4.108 20 C -0.086 4.086 21 C -0.143 4.143 22 C 0.081 3.919 23 F -0.146 7.146 24 C -0.147 4.147 25 H 0.116 0.884 26 H 0.114 0.886 27 H 0.094 0.906 28 H 0.103 0.897 29 H 0.082 0.918 30 H -0.002 1.002 31 H 0.023 0.977 32 H 0.268 0.732 33 H 0.154 0.846 34 H 0.129 0.871 35 H 0.150 0.850 36 H 0.170 0.830 37 H 0.159 0.841 38 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.616 6.657 4.657 24.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.208 4.208 3 C 0.010 3.990 4 N -0.321 5.321 5 C 0.141 3.859 6 C -0.585 4.585 7 H 0.072 0.928 8 C -0.191 4.191 9 N -0.568 5.568 10 Si 0.793 3.207 11 H -0.202 1.202 12 H -0.202 1.202 13 H -0.184 1.184 14 C 0.318 3.682 15 O -0.484 6.484 16 C -0.218 4.218 17 C -0.047 4.047 18 C -0.052 4.052 19 C -0.126 4.126 20 C -0.104 4.104 21 C -0.161 4.161 22 C 0.061 3.939 23 F -0.125 7.125 24 C -0.165 4.165 25 H 0.134 0.866 26 H 0.132 0.868 27 H 0.112 0.888 28 H 0.121 0.879 29 H 0.100 0.900 30 H 0.016 0.984 31 H 0.041 0.959 32 H 0.077 0.923 33 H 0.171 0.829 34 H 0.146 0.854 35 H 0.168 0.832 36 H 0.187 0.813 37 H 0.177 0.823 38 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -23.060 6.537 5.025 24.489 hybrid contribution 1.176 0.045 -0.645 1.342 sum -21.883 6.582 4.380 23.268 Atomic orbital electron populations 1.24029 0.94451 1.03464 0.97821 1.23241 0.96993 0.98121 1.02395 1.20863 0.92005 0.96628 0.89459 1.48110 1.13484 1.59840 1.10684 1.18745 0.77957 0.93985 0.95236 1.21681 0.94421 0.96152 1.46218 0.92789 1.25875 0.99452 0.98506 0.95244 1.70045 1.14753 1.22327 1.49648 0.85450 0.77526 0.78659 0.79073 1.20247 1.20217 1.18430 1.18979 0.88805 0.78134 0.82307 1.90732 1.57509 1.58875 1.41260 1.23087 0.94318 1.03974 1.00381 1.22375 0.93786 0.91341 0.97159 1.18796 0.92046 0.99847 0.94469 1.21773 0.97474 0.96888 0.96492 1.21334 0.92005 0.97350 0.99694 1.21631 1.02631 1.00645 0.91210 1.17749 0.87842 1.02748 0.85513 1.91498 1.69165 1.94685 1.57127 1.21494 0.92413 1.02037 1.00600 0.86599 0.86755 0.88755 0.87937 0.90000 0.98394 0.95892 0.92327 0.82865 0.85351 0.83194 0.81302 0.82327 0.83897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.31 14.27 67.78 0.97 -2.34 16 2 C -0.19 -5.32 9.85 25.65 0.25 -5.07 16 3 C 0.13 4.36 5.56 85.63 0.48 4.84 16 4 N -0.59 -26.43 2.44 -835.54 -2.04 -28.47 16 5 C 0.26 14.61 5.16 85.63 0.44 15.06 16 6 C -0.55 -32.25 9.39 25.60 0.24 -32.01 16 7 H 0.05 3.14 7.81 -2.91 -0.02 3.12 16 8 C 0.01 0.49 5.46 84.66 0.46 0.95 16 9 N -0.93 -57.01 13.29 21.45 0.28 -56.73 16 10 Si 0.97 45.47 29.54 68.60 2.03 47.50 16 11 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 12 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 13 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 14 C 0.53 23.25 7.60 86.38 0.66 23.91 16 15 O -0.60 -32.37 15.81 -4.33 -0.07 -32.43 16 16 C -0.20 -6.14 8.61 23.62 0.20 -5.94 16 17 C -0.03 -0.73 9.46 23.84 0.23 -0.50 16 18 C -0.05 -1.07 5.87 -20.15 -0.12 -1.19 16 19 C -0.11 -1.71 9.79 22.58 0.22 -1.49 16 20 C -0.09 -1.00 10.03 22.22 0.22 -0.78 16 21 C -0.14 -1.90 10.02 22.39 0.22 -1.67 16 22 C 0.08 1.46 7.29 22.33 0.16 1.62 16 23 F -0.15 -2.88 17.26 44.97 0.78 -2.10 16 24 C -0.15 -2.88 9.39 22.62 0.21 -2.67 16 25 H 0.12 1.88 7.84 -2.91 -0.02 1.86 16 26 H 0.11 2.00 8.06 -2.91 -0.02 1.98 16 27 H 0.09 2.97 8.06 -2.91 -0.02 2.94 16 28 H 0.10 2.67 5.74 -2.38 -0.01 2.66 16 29 H 0.08 2.83 8.07 -2.39 -0.02 2.81 16 30 H 0.00 -0.13 7.42 -2.39 -0.02 -0.15 16 31 H 0.02 1.30 8.07 -2.39 -0.02 1.28 16 32 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 33 H 0.15 3.72 4.17 -2.91 -0.01 3.71 16 34 H 0.13 3.79 7.52 -2.91 -0.02 3.77 16 35 H 0.15 1.88 8.06 -2.91 -0.02 1.86 16 36 H 0.17 0.82 8.06 -2.91 -0.02 0.80 16 37 H 0.16 1.32 8.06 -2.91 -0.02 1.30 16 38 H 0.14 2.55 6.17 -2.91 -0.02 2.53 16 Total: -1.00 -76.11 338.81 6.90 -69.21 By element: Atomic # 1 Polarization: 9.25 SS G_CDS: 1.07 Total: 10.31 kcal Atomic # 6 Polarization: -12.15 SS G_CDS: 4.85 Total: -7.29 kcal Atomic # 7 Polarization: -83.44 SS G_CDS: -1.75 Total: -85.19 kcal Atomic # 8 Polarization: -32.37 SS G_CDS: -0.07 Total: -32.43 kcal Atomic # 9 Polarization: -2.88 SS G_CDS: 0.78 Total: -2.10 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 2.03 Total: 47.50 kcal Total: -76.11 6.90 -69.21 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493510511.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.943 kcal (2) G-P(sol) polarization free energy of solvation -76.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds