Wall clock time and date at job start Tue Mar 31 2020 05:40:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 C 1.39753 * 125.84192 * 2 1 4 4 C 1.36125 * 107.83185 * 180.02562 * 3 2 1 5 5 N 1.39410 * 126.22091 * 179.97438 * 4 3 2 6 6 C 1.34772 * 119.99876 * 0.02562 * 5 4 3 7 7 O 1.21614 * 120.00112 * 0.02562 * 6 5 4 8 8 C 1.47409 * 119.99649 * 180.02562 * 6 5 4 9 9 C 1.41298 * 126.41876 * 359.69051 * 8 6 5 10 10 N 1.30444 * 108.02023 * 179.81719 * 9 8 6 11 11 N 1.39928 * 108.90437 * 0.44489 * 10 9 8 12 12 C 1.46509 * 125.75264 * 179.71125 * 11 10 9 13 13 C 1.34262 * 108.49393 * 359.71366 * 11 10 9 14 14 N 1.35265 * 107.56176 * 0.02562 * 4 3 2 15 15 C 1.46503 * 126.04900 * 179.97438 * 14 4 3 16 16 C 1.50703 * 109.46705 * 269.99791 * 15 14 4 17 17 H 1.07994 * 120.00293 * 0.02562 * 16 15 14 18 18 C 1.37876 * 119.99660 * 179.97438 * 16 15 14 19 19 N 1.31520 * 120.00293 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 119.99872 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47063 * 359.97438 * 20 18 16 22 22 H 1.48490 * 109.47224 * 120.00203 * 20 18 16 23 23 H 1.48505 * 109.46850 * 240.00180 * 20 18 16 24 24 N 1.30853 * 125.83870 * 180.02562 * 2 1 3 25 25 H 1.09004 * 109.47099 * 270.02719 * 1 2 3 26 26 H 1.09003 * 109.47333 * 30.02060 * 1 2 3 27 27 H 1.08999 * 109.47416 * 150.02401 * 1 2 3 28 28 H 1.08007 * 126.08041 * 0.02562 * 3 2 1 29 29 H 0.97008 * 119.99700 * 180.02562 * 5 4 3 30 30 H 1.07998 * 125.98641 * 0.02562 * 9 8 6 31 31 H 1.08998 * 109.46917 * 270.00353 * 12 11 10 32 32 H 1.08995 * 109.47055 * 30.00171 * 12 11 10 33 33 H 1.09002 * 109.46747 * 150.00070 * 12 11 10 34 34 H 1.08007 * 126.29718 * 179.97438 * 13 11 10 35 35 H 1.09001 * 109.47186 * 29.99922 * 15 14 4 36 36 H 1.09004 * 109.47251 * 150.00186 * 15 14 4 37 37 H 0.96997 * 120.00136 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3252 1.1329 0.0000 4 6 3.6198 0.7120 -0.0006 5 7 4.7509 1.5269 -0.0013 6 6 4.6154 2.8678 -0.0009 7 8 3.5064 3.3669 0.0005 8 6 5.8115 3.7294 -0.0022 9 6 7.1567 3.2971 0.0022 10 7 7.9204 4.3546 -0.0047 11 7 7.1126 5.4972 -0.0035 12 6 7.5893 6.8825 -0.0038 13 6 5.8271 5.1099 -0.0020 14 7 3.6092 -0.6406 -0.0015 15 6 4.7869 -1.5120 -0.0029 16 6 5.1897 -1.8098 -1.4243 17 1 4.6252 -1.3915 -2.2444 18 6 6.2795 -2.6154 -1.6775 19 7 6.9673 -3.1245 -0.6787 20 14 6.7792 -2.9840 -3.4393 21 1 5.8496 -2.2970 -4.3715 22 1 8.1632 -2.4994 -3.6729 23 1 6.7216 -4.4493 -3.6739 24 7 2.2731 -1.0608 -0.0005 25 1 -0.3633 0.0005 1.0277 26 1 -0.3634 0.8898 -0.5142 27 1 -0.3634 -0.8902 -0.5134 28 1 1.9901 2.1596 0.0004 29 1 5.6355 1.1287 -0.0020 30 1 7.4935 2.2710 0.0068 31 1 7.7088 7.2259 1.0237 32 1 8.5484 6.9366 -0.5188 33 1 6.8653 7.5157 -0.5167 34 1 4.9638 5.7589 -0.0004 35 1 5.6087 -1.0130 0.5107 36 1 4.5500 -2.4439 0.5104 37 1 7.7338 -3.6915 -0.8569 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000516774970.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:02 Heat of formation + Delta-G solvation = 121.110573 kcal Electronic energy + Delta-G solvation = -22198.076778 eV Core-core repulsion = 18786.236452 eV Total energy + Delta-G solvation = -3411.840326 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.128 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.52649 -40.62721 -38.70865 -34.66528 -33.77043 -33.52013 -32.00319 -30.59444 -29.12224 -28.36586 -27.03747 -25.98150 -23.45981 -22.69007 -21.33232 -20.68751 -19.58450 -19.21077 -17.63367 -16.82817 -16.42453 -15.86911 -15.75658 -14.97904 -14.89984 -14.68357 -14.31421 -13.91499 -13.83875 -13.18525 -12.93248 -12.85001 -12.79943 -12.73142 -12.44879 -11.99942 -11.72895 -11.53169 -11.18679 -11.01906 -10.87456 -10.32310 -10.27814 -9.85738 -9.77260 -9.74905 -9.42320 -8.87805 -8.69193 -7.84849 -7.34523 -6.30089 -4.38164 1.36715 2.02131 2.12892 2.78034 2.99815 3.18095 3.26752 3.33093 3.45807 3.82261 3.88668 4.23438 4.28706 4.56857 4.76793 4.80083 4.99595 5.03481 5.04649 5.29070 5.42580 5.52249 5.73973 6.07201 6.19481 6.23597 6.26255 6.39329 6.50946 6.58578 6.75345 6.89340 7.09452 7.35847 7.59023 7.64031 7.72230 7.83849 8.00213 8.43187 8.67631 8.76803 9.29472 10.77035 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.011049 B = 0.005493 C = 0.003896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2533.511496 B = 5096.257704 C = 7184.403117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.050 3.950 3 C -0.296 4.296 4 C 0.306 3.694 5 N -0.635 5.635 6 C 0.603 3.397 7 O -0.527 6.527 8 C -0.287 4.287 9 C 0.087 3.913 10 N -0.297 5.297 11 N -0.367 5.367 12 C 0.098 3.902 13 C 0.131 3.869 14 N -0.345 5.345 15 C 0.256 3.744 16 C -0.538 4.538 17 H 0.066 0.934 18 C 0.067 3.933 19 N -0.890 5.890 20 Si 0.905 3.095 21 H -0.271 1.271 22 H -0.281 1.281 23 H -0.280 1.280 24 N -0.287 5.287 25 H 0.067 0.933 26 H 0.069 0.931 27 H 0.065 0.935 28 H 0.162 0.838 29 H 0.415 0.585 30 H 0.195 0.805 31 H 0.079 0.921 32 H 0.093 0.907 33 H 0.091 0.909 34 H 0.191 0.809 35 H 0.044 0.956 36 H 0.056 0.944 37 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.299 17.835 2.456 18.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.115 4.115 3 C -0.328 4.328 4 C 0.083 3.917 5 N -0.281 5.281 6 C 0.391 3.609 7 O -0.403 6.403 8 C -0.302 4.302 9 C -0.101 4.101 10 N -0.116 5.116 11 N -0.146 5.146 12 C -0.043 4.043 13 C -0.021 4.021 14 N -0.131 5.131 15 C 0.138 3.862 16 C -0.577 4.577 17 H 0.084 0.916 18 C -0.137 4.137 19 N -0.528 5.528 20 Si 0.732 3.268 21 H -0.196 1.196 22 H -0.206 1.206 23 H -0.206 1.206 24 N -0.112 5.112 25 H 0.086 0.914 26 H 0.088 0.912 27 H 0.084 0.916 28 H 0.179 0.821 29 H 0.251 0.749 30 H 0.212 0.788 31 H 0.098 0.902 32 H 0.112 0.888 33 H 0.110 0.890 34 H 0.207 0.793 35 H 0.062 0.938 36 H 0.074 0.926 37 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 0.558 17.336 2.502 17.525 hybrid contribution 0.290 -0.039 -0.952 0.996 sum 0.849 17.297 1.550 17.387 Atomic orbital electron populations 1.20009 0.87669 1.02387 1.01976 1.22015 0.96461 0.91096 1.01925 1.21268 0.89046 1.00423 1.22029 1.17877 0.87972 0.83290 1.02563 1.42493 1.08165 1.05362 1.72101 1.17032 0.87830 0.80372 0.75686 1.90693 1.26016 1.73950 1.49622 1.20057 0.93496 0.92960 1.23731 1.24242 0.90541 0.98960 0.96333 1.77224 1.18338 0.91110 1.24968 1.48443 1.04083 1.07114 1.54927 1.21984 1.02414 0.76048 1.03878 1.22929 0.88362 0.95285 0.95496 1.49331 1.06504 1.02167 1.55066 1.19624 0.77883 0.89774 0.98903 1.21392 1.13189 1.31722 0.91398 0.91625 1.24926 0.95705 0.94913 0.98108 1.69927 1.19162 1.32715 1.30990 0.86320 0.78364 0.78392 0.83764 1.19557 1.20636 1.20581 1.77342 0.86146 1.21827 1.25910 0.91430 0.91171 0.91563 0.82098 0.74863 0.78839 0.90212 0.88842 0.89013 0.79252 0.93800 0.92554 0.92250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.93 10.44 36.00 0.38 -0.56 16 2 C 0.05 1.02 7.21 -82.45 -0.59 0.43 16 3 C -0.30 -6.19 9.58 -39.78 -0.38 -6.57 16 4 C 0.31 6.61 7.66 -153.21 -1.17 5.44 16 5 N -0.64 -11.60 5.40 -12.45 -0.07 -11.66 16 6 C 0.60 10.13 7.78 -12.53 -0.10 10.03 16 7 O -0.53 -9.85 14.02 5.26 0.07 -9.77 16 8 C -0.29 -3.93 6.13 -105.07 -0.64 -4.57 16 9 C 0.09 1.13 11.50 -16.98 -0.20 0.94 16 10 N -0.30 -3.85 12.50 30.86 0.39 -3.47 16 11 N -0.37 -3.75 3.98 -67.59 -0.27 -4.02 16 12 C 0.10 0.51 11.44 59.85 0.68 1.19 16 13 C 0.13 1.42 11.30 -16.55 -0.19 1.23 16 14 N -0.35 -8.23 3.60 -61.58 -0.22 -8.45 16 15 C 0.26 6.45 6.01 -5.19 -0.03 6.42 16 16 C -0.54 -14.57 9.39 -34.44 -0.32 -14.89 16 17 H 0.07 1.86 7.81 -52.49 -0.41 1.45 16 18 C 0.07 1.79 5.46 -17.82 -0.10 1.69 16 19 N -0.89 -24.39 13.29 55.43 0.74 -23.65 16 20 Si 0.90 20.85 29.54 -169.99 -5.02 15.83 16 21 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 22 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 23 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 24 N -0.29 -6.80 12.56 33.65 0.42 -6.37 16 25 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 26 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 27 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 28 H 0.16 3.26 5.82 -52.48 -0.31 2.96 16 29 H 0.41 6.98 6.92 -40.82 -0.28 6.70 16 30 H 0.19 2.19 7.50 -52.49 -0.39 1.80 16 31 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.09 0.45 8.14 -51.93 -0.42 0.02 16 33 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 34 H 0.19 1.52 8.06 -52.48 -0.42 1.09 16 35 H 0.04 1.06 7.50 -51.93 -0.39 0.67 16 36 H 0.06 1.53 8.14 -51.93 -0.42 1.10 16 37 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 LS Contribution 329.01 15.07 4.96 4.96 Total: -1.00 -34.10 329.01 -5.96 -40.06 By element: Atomic # 1 Polarization: 10.06 SS G_CDS: -4.30 Total: 5.76 kcal Atomic # 6 Polarization: 3.44 SS G_CDS: -2.66 Total: 0.78 kcal Atomic # 7 Polarization: -58.61 SS G_CDS: 0.99 Total: -57.62 kcal Atomic # 8 Polarization: -9.85 SS G_CDS: 0.07 Total: -9.77 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -34.10 -5.96 -40.06 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000516774970.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.173 kcal (2) G-P(sol) polarization free energy of solvation -34.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 127.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.063 kcal (6) G-S(sol) free energy of system = (1) + (5) 121.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds