Wall clock time and date at job start Tue Mar 31 2020 05:40:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 C 1.39753 * 125.84192 * 2 1 4 4 C 1.36125 * 107.83185 * 180.02562 * 3 2 1 5 5 N 1.39410 * 126.22091 * 179.97438 * 4 3 2 6 6 C 1.34772 * 119.99876 * 0.02562 * 5 4 3 7 7 O 1.21614 * 120.00112 * 0.02562 * 6 5 4 8 8 C 1.47409 * 119.99649 * 180.02562 * 6 5 4 9 9 C 1.41298 * 126.41876 * 359.69051 * 8 6 5 10 10 N 1.30444 * 108.02023 * 179.81719 * 9 8 6 11 11 N 1.39928 * 108.90437 * 0.44489 * 10 9 8 12 12 C 1.46509 * 125.75264 * 179.71125 * 11 10 9 13 13 C 1.34262 * 108.49393 * 359.71366 * 11 10 9 14 14 N 1.35265 * 107.56176 * 0.02562 * 4 3 2 15 15 C 1.46503 * 126.04900 * 179.97438 * 14 4 3 16 16 C 1.50703 * 109.46705 * 269.99791 * 15 14 4 17 17 H 1.07994 * 120.00293 * 0.02562 * 16 15 14 18 18 C 1.37876 * 119.99660 * 179.97438 * 16 15 14 19 19 N 1.31520 * 120.00293 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 119.99872 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47063 * 359.97438 * 20 18 16 22 22 H 1.48490 * 109.47224 * 120.00203 * 20 18 16 23 23 H 1.48505 * 109.46850 * 240.00180 * 20 18 16 24 24 N 1.30853 * 125.83870 * 180.02562 * 2 1 3 25 25 H 1.09004 * 109.47099 * 270.02719 * 1 2 3 26 26 H 1.09003 * 109.47333 * 30.02060 * 1 2 3 27 27 H 1.08999 * 109.47416 * 150.02401 * 1 2 3 28 28 H 1.08007 * 126.08041 * 0.02562 * 3 2 1 29 29 H 0.97008 * 119.99700 * 180.02562 * 5 4 3 30 30 H 1.07998 * 125.98641 * 0.02562 * 9 8 6 31 31 H 1.08998 * 109.46917 * 270.00353 * 12 11 10 32 32 H 1.08995 * 109.47055 * 30.00171 * 12 11 10 33 33 H 1.09002 * 109.46747 * 150.00070 * 12 11 10 34 34 H 1.08007 * 126.29718 * 179.97438 * 13 11 10 35 35 H 1.09001 * 109.47186 * 29.99922 * 15 14 4 36 36 H 1.09004 * 109.47251 * 150.00186 * 15 14 4 37 37 H 0.96997 * 120.00136 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3252 1.1329 0.0000 4 6 3.6198 0.7120 -0.0006 5 7 4.7509 1.5269 -0.0013 6 6 4.6154 2.8678 -0.0009 7 8 3.5064 3.3669 0.0005 8 6 5.8115 3.7294 -0.0022 9 6 7.1567 3.2971 0.0022 10 7 7.9204 4.3546 -0.0047 11 7 7.1126 5.4972 -0.0035 12 6 7.5893 6.8825 -0.0038 13 6 5.8271 5.1099 -0.0020 14 7 3.6092 -0.6406 -0.0015 15 6 4.7869 -1.5120 -0.0029 16 6 5.1897 -1.8098 -1.4243 17 1 4.6252 -1.3915 -2.2444 18 6 6.2795 -2.6154 -1.6775 19 7 6.9673 -3.1245 -0.6787 20 14 6.7792 -2.9840 -3.4393 21 1 5.8496 -2.2970 -4.3715 22 1 8.1632 -2.4994 -3.6729 23 1 6.7216 -4.4493 -3.6739 24 7 2.2731 -1.0608 -0.0005 25 1 -0.3633 0.0005 1.0277 26 1 -0.3634 0.8898 -0.5142 27 1 -0.3634 -0.8902 -0.5134 28 1 1.9901 2.1596 0.0004 29 1 5.6355 1.1287 -0.0020 30 1 7.4935 2.2710 0.0068 31 1 7.7088 7.2259 1.0237 32 1 8.5484 6.9366 -0.5188 33 1 6.8653 7.5157 -0.5167 34 1 4.9638 5.7589 -0.0004 35 1 5.6087 -1.0130 0.5107 36 1 4.5500 -2.4439 0.5104 37 1 7.7338 -3.6915 -0.8569 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000516774970.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:01 Heat of formation + Delta-G solvation = 98.213794 kcal Electronic energy + Delta-G solvation = -22199.069657 eV Core-core repulsion = 18786.236452 eV Total energy + Delta-G solvation = -3412.833205 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.128 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.59416 -42.11593 -40.10414 -36.22870 -35.56506 -34.38572 -33.77007 -31.64948 -30.70321 -29.81222 -27.91659 -27.75083 -24.90301 -24.32662 -22.36627 -21.88869 -21.07931 -20.56866 -18.92707 -18.75231 -18.03622 -16.96864 -16.80973 -16.59201 -16.28764 -15.99670 -15.60429 -15.37675 -15.14290 -14.52256 -14.40995 -14.02110 -13.92868 -13.62828 -13.47689 -13.45463 -13.35126 -13.08344 -12.87525 -12.70446 -12.31415 -12.14788 -11.88725 -11.64763 -11.41420 -10.87461 -10.74892 -10.62641 -9.85822 -9.58581 -8.98538 -8.35093 -6.52151 0.35944 0.90856 1.23540 1.32080 1.35794 1.39068 1.50368 1.59839 1.95449 2.26422 2.38008 2.46217 2.95267 3.38602 3.75099 3.87365 3.93501 4.12151 4.27464 4.45243 4.53548 4.62252 4.66397 4.72892 4.78073 4.86704 4.93805 4.94947 5.01783 5.24739 5.28004 5.31936 5.53139 5.78723 5.85052 6.01241 6.18673 6.32486 6.46490 6.60076 7.03364 7.07755 7.20037 8.71540 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.011049 B = 0.005493 C = 0.003896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2533.511496 B = 5096.257704 C = 7184.403117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.059 3.941 3 C -0.306 4.306 4 C 0.302 3.698 5 N -0.637 5.637 6 C 0.606 3.394 7 O -0.547 6.547 8 C -0.317 4.317 9 C 0.082 3.918 10 N -0.321 5.321 11 N -0.358 5.358 12 C 0.085 3.915 13 C 0.151 3.849 14 N -0.368 5.368 15 C 0.272 3.728 16 C -0.554 4.554 17 H 0.046 0.954 18 C 0.029 3.971 19 N -0.913 5.913 20 Si 0.968 3.032 21 H -0.277 1.277 22 H -0.265 1.265 23 H -0.275 1.275 24 N -0.333 5.333 25 H 0.090 0.910 26 H 0.094 0.906 27 H 0.071 0.929 28 H 0.171 0.829 29 H 0.418 0.582 30 H 0.199 0.801 31 H 0.097 0.903 32 H 0.097 0.903 33 H 0.124 0.876 34 H 0.222 0.778 35 H 0.048 0.952 36 H 0.028 0.972 37 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.285 20.048 1.817 20.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.107 4.107 3 C -0.338 4.338 4 C 0.079 3.921 5 N -0.283 5.283 6 C 0.396 3.604 7 O -0.425 6.425 8 C -0.332 4.332 9 C -0.106 4.106 10 N -0.141 5.141 11 N -0.135 5.135 12 C -0.054 4.054 13 C -0.002 4.002 14 N -0.154 5.154 15 C 0.153 3.847 16 C -0.592 4.592 17 H 0.065 0.935 18 C -0.173 4.173 19 N -0.551 5.551 20 Si 0.792 3.208 21 H -0.202 1.202 22 H -0.190 1.190 23 H -0.200 1.200 24 N -0.158 5.158 25 H 0.108 0.892 26 H 0.113 0.887 27 H 0.090 0.910 28 H 0.188 0.812 29 H 0.256 0.744 30 H 0.215 0.785 31 H 0.115 0.885 32 H 0.116 0.884 33 H 0.142 0.858 34 H 0.239 0.761 35 H 0.066 0.934 36 H 0.046 0.954 37 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 0.611 19.584 1.874 19.683 hybrid contribution 0.277 -0.558 -0.706 0.942 sum 0.888 19.027 1.168 19.083 Atomic orbital electron populations 1.20223 0.83846 1.03890 1.03884 1.22894 0.98746 0.90038 0.98976 1.21494 0.88898 1.00902 1.22518 1.18284 0.89478 0.82814 1.01499 1.42663 1.07483 1.05791 1.72400 1.17482 0.88634 0.79776 0.74482 1.90654 1.27085 1.74021 1.50761 1.19903 0.92352 0.93858 1.27057 1.24354 0.90437 0.99509 0.96257 1.77178 1.19266 0.91931 1.25701 1.48863 1.03692 1.08108 1.52882 1.22469 1.03609 0.73662 1.05619 1.23372 0.89444 0.94519 0.92905 1.49147 1.06325 1.02816 1.57076 1.19226 0.78686 0.89008 0.97792 1.21432 1.13642 1.32527 0.91624 0.93525 1.25651 0.95357 0.94325 1.01933 1.69996 1.19479 1.32868 1.32792 0.85361 0.78382 0.78200 0.78853 1.20184 1.19024 1.20025 1.77293 0.86384 1.23675 1.28416 0.89184 0.88723 0.90961 0.81226 0.74446 0.78475 0.88484 0.88420 0.85809 0.76149 0.93446 0.95434 0.91655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.70 10.44 71.23 0.74 -0.96 16 2 C 0.06 2.39 7.21 43.07 0.31 2.70 16 3 C -0.31 -12.83 9.58 22.14 0.21 -12.62 16 4 C 0.30 13.36 7.66 131.34 1.01 14.36 16 5 N -0.64 -23.78 5.40 -311.54 -1.68 -25.47 16 6 C 0.61 20.28 7.78 86.66 0.67 20.96 16 7 O -0.55 -20.13 14.02 -4.08 -0.06 -20.18 16 8 C -0.32 -8.39 6.13 -20.15 -0.12 -8.51 16 9 C 0.08 2.11 11.50 85.65 0.99 3.09 16 10 N -0.32 -7.94 12.50 -56.27 -0.70 -8.65 16 11 N -0.36 -6.41 3.98 -367.74 -1.46 -7.87 16 12 C 0.09 0.59 11.44 127.77 1.46 2.05 16 13 C 0.15 2.92 11.30 84.28 0.95 3.87 16 14 N -0.37 -18.19 3.60 -348.74 -1.26 -19.45 16 15 C 0.27 14.31 6.01 85.63 0.51 14.83 16 16 C -0.55 -30.87 9.39 25.60 0.24 -30.62 16 17 H 0.05 2.73 7.81 -2.91 -0.02 2.71 16 18 C 0.03 1.56 5.46 84.65 0.46 2.02 16 19 N -0.91 -50.53 13.29 21.45 0.28 -50.24 16 20 Si 0.97 42.86 29.54 68.60 2.03 44.88 16 21 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 22 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 23 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 24 N -0.33 -16.15 12.56 -47.46 -0.60 -16.75 16 25 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 26 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 27 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 28 H 0.17 6.77 5.82 -2.91 -0.02 6.76 16 29 H 0.42 14.66 6.92 -92.70 -0.64 14.01 16 30 H 0.20 4.61 7.50 -2.91 -0.02 4.59 16 31 H 0.10 0.41 8.14 -2.39 -0.02 0.39 16 32 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.12 0.12 8.14 -2.39 -0.02 0.10 16 34 H 0.22 2.73 8.06 -2.91 -0.02 2.71 16 35 H 0.05 2.41 7.50 -2.39 -0.02 2.39 16 36 H 0.03 1.58 8.14 -2.39 -0.02 1.56 16 37 H 0.27 14.14 8.31 -92.71 -0.77 13.37 16 Total: -1.00 -74.76 329.01 4.46 -70.30 By element: Atomic # 1 Polarization: 21.76 SS G_CDS: 0.47 Total: 22.23 kcal Atomic # 6 Polarization: 3.74 SS G_CDS: 7.44 Total: 11.18 kcal Atomic # 7 Polarization: -123.00 SS G_CDS: -5.42 Total: -128.42 kcal Atomic # 8 Polarization: -20.13 SS G_CDS: -0.06 Total: -20.18 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.88 kcal Total: -74.76 4.46 -70.30 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000516774970.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.514 kcal (2) G-P(sol) polarization free energy of solvation -74.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.300 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds