Wall clock time and date at job start Tue Mar 31 2020 06:42:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36935 * 120.00182 * 2 1 4 4 H 1.07998 * 119.99726 * 170.75792 * 3 2 1 5 5 C 1.38804 * 120.00073 * 350.75922 * 3 2 1 6 6 N 1.31623 * 120.00283 * 24.94832 * 5 3 2 7 7 Si 1.86803 * 119.99904 * 204.95117 * 5 3 2 8 8 H 1.48498 * 109.46955 * 59.99938 * 7 5 3 9 9 H 1.48499 * 109.46923 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.46998 * 299.99807 * 7 5 3 11 11 C 1.46505 * 119.99677 * 179.97438 * 2 1 3 12 12 H 1.08997 * 109.47340 * 357.49419 * 11 2 1 13 13 C 1.50694 * 109.47348 * 237.49127 * 11 2 1 14 14 C 1.39876 * 126.03727 * 339.04825 * 13 11 2 15 15 N 1.30838 * 108.19986 * 179.97438 * 14 13 11 16 16 N 1.40085 * 108.20766 * 0.02562 * 15 14 13 17 17 C 1.46500 * 126.03805 * 180.02562 * 16 15 14 18 18 C 1.34951 * 107.92568 * 359.75201 * 16 15 14 19 19 C 1.50705 * 109.46678 * 117.49007 * 11 2 1 20 20 C 1.38267 * 119.98657 * 241.31947 * 19 11 2 21 21 C 1.38218 * 120.05370 * 180.02562 * 20 19 11 22 22 C 1.38217 * 120.02159 * 359.97438 * 21 20 19 23 23 C 1.38436 * 119.97893 * 0.02562 * 22 21 20 24 24 F 1.35098 * 120.02993 * 180.02562 * 23 22 21 25 25 C 1.38173 * 119.98589 * 61.05040 * 19 11 2 26 26 H 1.08998 * 109.47439 * 173.77971 * 1 2 3 27 27 H 1.09007 * 109.47206 * 293.78290 * 1 2 3 28 28 H 1.09004 * 109.46948 * 53.77818 * 1 2 3 29 29 H 0.96993 * 120.00439 * 179.97438 * 6 5 3 30 30 H 1.07991 * 125.89921 * 359.95685 * 14 13 11 31 31 H 1.08998 * 109.47472 * 89.96950 * 17 16 15 32 32 H 1.09004 * 109.47114 * 209.97233 * 17 16 15 33 33 H 1.09004 * 109.47030 * 329.96508 * 17 16 15 34 34 H 1.07997 * 126.13067 * 180.24001 * 18 16 15 35 35 H 1.08009 * 119.97204 * 0.02819 * 20 19 11 36 36 H 1.08001 * 119.98919 * 180.02562 * 21 20 19 37 37 H 1.08008 * 120.01151 * 180.02562 * 22 21 20 38 38 H 1.08000 * 120.01254 * 359.97438 * 25 19 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.2192 1.1919 0.1502 5 6 1.4692 2.3802 -0.1930 6 7 0.1905 2.4650 0.1070 7 14 2.3683 3.8671 -0.8787 8 1 2.9102 3.5416 -2.2225 9 1 1.4249 5.0085 -0.9891 10 1 3.4845 4.2330 0.0298 11 6 2.1974 -1.2688 0.0006 12 1 1.4900 -2.0968 0.0459 13 6 3.1099 -1.3216 1.1987 14 6 3.5695 -0.2228 1.9321 15 7 4.3369 -0.6661 2.8947 16 7 4.3904 -2.0629 2.8038 17 6 5.1394 -2.9563 3.6909 18 6 3.6252 -2.4407 1.7583 19 6 3.0166 -1.3764 -1.2599 20 6 2.7793 -2.4054 -2.1524 21 6 3.5301 -2.5058 -3.3086 22 6 4.5187 -1.5770 -3.5739 23 6 4.7572 -0.5463 -2.6810 24 9 5.7229 0.3624 -2.9396 25 6 4.0006 -0.4436 -1.5257 26 1 -0.3634 -1.0216 -0.1113 27 1 -0.3634 0.4145 0.9404 28 1 -0.3633 0.6073 -0.8291 29 1 -0.2849 3.2997 -0.0275 30 1 3.3323 0.8125 1.7373 31 1 4.5077 -3.2490 4.5296 32 1 5.4445 -3.8450 3.1384 33 1 6.0234 -2.4397 4.0648 34 1 3.4562 -3.4544 1.4264 35 1 2.0067 -3.1314 -1.9461 36 1 3.3437 -3.3097 -4.0053 37 1 5.1050 -1.6553 -4.4776 38 1 4.1825 0.3628 -0.8307 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000523440620.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:12 Heat of formation + Delta-G solvation = 108.167497 kcal Electronic energy + Delta-G solvation = -23349.748711 eV Core-core repulsion = 19917.427170 eV Total energy + Delta-G solvation = -3432.321541 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.129 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -48.35074 -40.67036 -38.61722 -35.85503 -32.88432 -32.09800 -30.20861 -29.98338 -29.38495 -26.94766 -26.00594 -24.89706 -22.29882 -21.77565 -20.95389 -20.32417 -19.37032 -17.32156 -16.79700 -15.89379 -15.71355 -15.49023 -15.06893 -14.97443 -14.83133 -13.86488 -13.70822 -13.48551 -13.28057 -13.03035 -12.62474 -12.52990 -12.28220 -12.00421 -11.87365 -11.71714 -11.50516 -11.15058 -10.93420 -10.72731 -10.68380 -10.32798 -10.15794 -9.89530 -9.44380 -8.79481 -8.44147 -8.32307 -8.14705 -7.69449 -7.00608 -5.85101 -3.08619 1.70498 1.81363 2.43887 3.04133 3.40310 3.46943 3.51723 3.55961 4.14509 4.49246 4.79233 4.84124 5.17720 5.22471 5.27217 5.29303 5.34463 5.47743 5.53256 5.58894 5.76296 5.95380 5.96347 6.14240 6.24450 6.37128 6.53433 6.59129 6.65582 6.73437 6.79833 6.81564 7.19457 7.41263 7.47427 7.52869 7.56615 7.69821 7.83303 8.25261 8.37154 9.15954 9.81924 10.27020 11.19562 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.010400 B = 0.008492 C = 0.006218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2691.740606 B = 3296.345816 C = 4501.862590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.164 3.836 2 N -0.591 5.591 3 C -0.264 4.264 4 H 0.088 0.912 5 C 0.015 3.985 6 N -0.889 5.889 7 Si 0.878 3.122 8 H -0.282 1.282 9 H -0.290 1.290 10 H -0.281 1.281 11 C 0.286 3.714 12 H 0.071 0.929 13 C -0.221 4.221 14 C 0.075 3.925 15 N -0.320 5.320 16 N -0.392 5.392 17 C 0.109 3.891 18 C 0.037 3.963 19 C -0.038 4.038 20 C -0.133 4.133 21 C -0.104 4.104 22 C -0.172 4.172 23 C 0.084 3.916 24 F -0.149 7.149 25 C -0.117 4.117 26 H -0.002 1.002 27 H 0.037 0.963 28 H 0.045 0.955 29 H 0.255 0.745 30 H 0.207 0.793 31 H 0.065 0.935 32 H 0.078 0.922 33 H 0.081 0.919 34 H 0.163 0.837 35 H 0.120 0.880 36 H 0.121 0.879 37 H 0.122 0.878 38 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.970 -13.028 -0.571 14.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.312 5.312 3 C -0.392 4.392 4 H 0.105 0.895 5 C -0.184 4.184 6 N -0.532 5.532 7 Si 0.707 3.293 8 H -0.208 1.208 9 H -0.216 1.216 10 H -0.207 1.207 11 C 0.176 3.824 12 H 0.089 0.911 13 C -0.235 4.235 14 C -0.111 4.111 15 N -0.141 5.141 16 N -0.176 5.176 17 C -0.033 4.033 18 C -0.109 4.109 19 C -0.041 4.041 20 C -0.152 4.152 21 C -0.122 4.122 22 C -0.192 4.192 23 C 0.065 3.935 24 F -0.128 7.128 25 C -0.136 4.136 26 H 0.017 0.983 27 H 0.056 0.944 28 H 0.063 0.937 29 H 0.065 0.935 30 H 0.223 0.777 31 H 0.083 0.917 32 H 0.097 0.903 33 H 0.100 0.900 34 H 0.180 0.820 35 H 0.138 0.862 36 H 0.139 0.861 37 H 0.140 0.860 38 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 6.615 -12.597 0.550 14.239 hybrid contribution 0.120 0.816 -1.238 1.488 sum 6.736 -11.780 -0.688 13.588 Atomic orbital electron populations 1.21076 0.81390 0.93920 1.01554 1.43989 1.01971 0.99833 1.85370 1.19172 0.91949 0.83760 1.44286 0.89484 1.24820 0.95569 0.97662 1.00381 1.70253 1.09175 1.25896 1.47900 0.86717 0.79337 0.82742 0.80533 1.20808 1.21578 1.20670 1.17429 0.89266 0.89803 0.85921 0.91101 1.20920 1.07429 0.91628 1.03506 1.24900 0.93039 1.02127 0.91041 1.77371 1.24663 0.87593 1.24439 1.48376 1.39039 1.05524 1.24618 1.21640 0.96276 0.92123 0.93274 1.22114 0.97349 0.99661 0.91738 1.20577 0.93479 0.92268 0.97819 1.21025 1.00386 0.99035 0.94711 1.20770 0.95707 0.98495 0.97260 1.20910 1.01709 0.96534 1.00016 1.17867 0.89670 0.89321 0.96665 1.91444 1.61291 1.65871 1.94209 1.21415 0.95302 1.00354 0.96507 0.98309 0.94414 0.93685 0.93505 0.77660 0.91650 0.90314 0.89996 0.81973 0.86209 0.86103 0.86036 0.83829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.83 9.06 59.85 0.54 4.37 16 2 N -0.59 -13.60 2.80 -176.15 -0.49 -14.09 16 3 C -0.26 -6.57 6.08 -15.06 -0.09 -6.67 16 4 H 0.09 2.12 3.46 -52.49 -0.18 1.94 16 5 C 0.02 0.40 5.23 -17.43 -0.09 0.31 16 6 N -0.89 -24.48 10.02 55.49 0.56 -23.92 16 7 Si 0.88 21.28 29.62 -169.99 -5.04 16.24 16 8 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 9 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 10 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 11 C 0.29 5.47 2.95 -70.23 -0.21 5.26 16 12 H 0.07 1.23 7.30 -51.93 -0.38 0.85 16 13 C -0.22 -4.15 4.79 -105.05 -0.50 -4.65 16 14 C 0.07 1.55 10.32 -17.36 -0.18 1.37 16 15 N -0.32 -6.30 12.58 30.62 0.39 -5.92 16 16 N -0.39 -6.28 4.01 -68.16 -0.27 -6.56 16 17 C 0.11 1.15 11.47 59.85 0.69 1.83 16 18 C 0.04 0.58 11.40 -17.22 -0.20 0.38 16 19 C -0.04 -0.70 4.95 -104.63 -0.52 -1.22 16 20 C -0.13 -2.04 9.67 -39.58 -0.38 -2.42 16 21 C -0.10 -1.48 10.04 -39.60 -0.40 -1.88 16 22 C -0.17 -2.70 10.03 -39.52 -0.40 -3.10 16 23 C 0.08 1.56 7.30 -39.42 -0.29 1.27 16 24 F -0.15 -2.87 17.27 2.25 0.04 -2.83 16 25 C -0.12 -2.31 8.29 -39.51 -0.33 -2.64 16 26 H 0.00 -0.04 7.57 -51.93 -0.39 -0.43 16 27 H 0.04 0.96 7.42 -51.93 -0.39 0.57 16 28 H 0.04 1.15 6.85 -51.93 -0.36 0.79 16 29 H 0.25 6.90 8.31 -40.82 -0.34 6.56 16 30 H 0.21 4.67 5.04 -52.49 -0.26 4.41 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.16 1.93 8.06 -52.49 -0.42 1.50 16 35 H 0.12 1.54 7.95 -52.48 -0.42 1.12 16 36 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 37 H 0.12 1.61 8.06 -52.48 -0.42 1.19 16 38 H 0.14 3.12 5.18 -52.49 -0.27 2.84 16 LS Contribution 316.90 15.07 4.78 4.78 Total: -1.00 -29.96 316.90 -6.72 -36.67 By element: Atomic # 1 Polarization: 7.73 SS G_CDS: -4.32 Total: 3.41 kcal Atomic # 6 Polarization: -5.43 SS G_CDS: -2.35 Total: -7.78 kcal Atomic # 7 Polarization: -50.67 SS G_CDS: 0.17 Total: -50.49 kcal Atomic # 9 Polarization: -2.87 SS G_CDS: 0.04 Total: -2.83 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.04 Total: 16.24 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -29.96 -6.72 -36.67 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000523440620.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.841 kcal (2) G-P(sol) polarization free energy of solvation -29.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.673 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds