Wall clock time and date at job start Tue Mar 31 2020 06:42:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36935 * 120.00182 * 2 1 4 4 H 1.07998 * 119.99726 * 170.75792 * 3 2 1 5 5 C 1.38804 * 120.00073 * 350.75922 * 3 2 1 6 6 N 1.31623 * 120.00283 * 24.94832 * 5 3 2 7 7 Si 1.86803 * 119.99904 * 204.95117 * 5 3 2 8 8 H 1.48498 * 109.46955 * 59.99938 * 7 5 3 9 9 H 1.48499 * 109.46923 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.46998 * 299.99807 * 7 5 3 11 11 C 1.46505 * 119.99677 * 179.97438 * 2 1 3 12 12 H 1.08997 * 109.47340 * 357.49419 * 11 2 1 13 13 C 1.50694 * 109.47348 * 237.49127 * 11 2 1 14 14 C 1.39876 * 126.03727 * 339.04825 * 13 11 2 15 15 N 1.30838 * 108.19986 * 179.97438 * 14 13 11 16 16 N 1.40085 * 108.20766 * 0.02562 * 15 14 13 17 17 C 1.46500 * 126.03805 * 180.02562 * 16 15 14 18 18 C 1.34951 * 107.92568 * 359.75201 * 16 15 14 19 19 C 1.50705 * 109.46678 * 117.49007 * 11 2 1 20 20 C 1.38267 * 119.98657 * 241.31947 * 19 11 2 21 21 C 1.38218 * 120.05370 * 180.02562 * 20 19 11 22 22 C 1.38217 * 120.02159 * 359.97438 * 21 20 19 23 23 C 1.38436 * 119.97893 * 0.02562 * 22 21 20 24 24 F 1.35098 * 120.02993 * 180.02562 * 23 22 21 25 25 C 1.38173 * 119.98589 * 61.05040 * 19 11 2 26 26 H 1.08998 * 109.47439 * 173.77971 * 1 2 3 27 27 H 1.09007 * 109.47206 * 293.78290 * 1 2 3 28 28 H 1.09004 * 109.46948 * 53.77818 * 1 2 3 29 29 H 0.96993 * 120.00439 * 179.97438 * 6 5 3 30 30 H 1.07991 * 125.89921 * 359.95685 * 14 13 11 31 31 H 1.08998 * 109.47472 * 89.96950 * 17 16 15 32 32 H 1.09004 * 109.47114 * 209.97233 * 17 16 15 33 33 H 1.09004 * 109.47030 * 329.96508 * 17 16 15 34 34 H 1.07997 * 126.13067 * 180.24001 * 18 16 15 35 35 H 1.08009 * 119.97204 * 0.02819 * 20 19 11 36 36 H 1.08001 * 119.98919 * 180.02562 * 21 20 19 37 37 H 1.08008 * 120.01151 * 180.02562 * 22 21 20 38 38 H 1.08000 * 120.01254 * 359.97438 * 25 19 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.2192 1.1919 0.1502 5 6 1.4692 2.3802 -0.1930 6 7 0.1905 2.4650 0.1070 7 14 2.3683 3.8671 -0.8787 8 1 2.9102 3.5416 -2.2225 9 1 1.4249 5.0085 -0.9891 10 1 3.4845 4.2330 0.0298 11 6 2.1974 -1.2688 0.0006 12 1 1.4900 -2.0968 0.0459 13 6 3.1099 -1.3216 1.1987 14 6 3.5695 -0.2228 1.9321 15 7 4.3369 -0.6661 2.8947 16 7 4.3904 -2.0629 2.8038 17 6 5.1394 -2.9563 3.6909 18 6 3.6252 -2.4407 1.7583 19 6 3.0166 -1.3764 -1.2599 20 6 2.7793 -2.4054 -2.1524 21 6 3.5301 -2.5058 -3.3086 22 6 4.5187 -1.5770 -3.5739 23 6 4.7572 -0.5463 -2.6810 24 9 5.7229 0.3624 -2.9396 25 6 4.0006 -0.4436 -1.5257 26 1 -0.3634 -1.0216 -0.1113 27 1 -0.3634 0.4145 0.9404 28 1 -0.3633 0.6073 -0.8291 29 1 -0.2849 3.2997 -0.0275 30 1 3.3323 0.8125 1.7373 31 1 4.5077 -3.2490 4.5296 32 1 5.4445 -3.8450 3.1384 33 1 6.0234 -2.4397 4.0648 34 1 3.4562 -3.4544 1.4264 35 1 2.0067 -3.1314 -1.9461 36 1 3.3437 -3.3097 -4.0053 37 1 5.1050 -1.6553 -4.4776 38 1 4.1825 0.3628 -0.8307 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000523440620.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:11 Heat of formation + Delta-G solvation = 90.839329 kcal Electronic energy + Delta-G solvation = -23350.500117 eV Core-core repulsion = 19917.427170 eV Total energy + Delta-G solvation = -3433.072947 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.129 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.78488 -42.04035 -39.95168 -37.48827 -34.39304 -33.51048 -31.83781 -31.35272 -30.71285 -28.36346 -27.72041 -26.29277 -23.81423 -23.22781 -22.41869 -21.66434 -20.80000 -19.04135 -18.14172 -17.35270 -17.13963 -16.82938 -16.52124 -16.45075 -16.14334 -15.59394 -15.12462 -14.96935 -14.82462 -14.40649 -14.03009 -13.73911 -13.63228 -13.43821 -13.27942 -13.18089 -12.92058 -12.76218 -12.66927 -12.44793 -12.21600 -12.07063 -11.94099 -11.41993 -11.18403 -10.39731 -10.13746 -9.69980 -9.45576 -9.03980 -8.88541 -7.83910 -5.05677 0.40298 0.53193 1.12767 1.40784 1.45494 1.50656 1.90892 2.06063 2.50736 2.85754 3.29048 3.47939 3.64220 3.99043 4.03747 4.15684 4.21659 4.34539 4.50427 4.52066 4.56207 4.60717 4.73718 4.78017 4.85870 4.93207 5.10713 5.17014 5.29850 5.34463 5.40347 5.54498 5.62052 5.69795 5.87796 5.88571 5.92368 6.19039 6.33177 6.40469 6.93747 7.21809 7.97214 8.34664 9.20449 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.010400 B = 0.008492 C = 0.006218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2691.740606 B = 3296.345816 C = 4501.862590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.178 3.822 2 N -0.604 5.604 3 C -0.232 4.232 4 H 0.087 0.913 5 C -0.042 4.042 6 N -0.921 5.921 7 Si 0.919 3.081 8 H -0.291 1.291 9 H -0.294 1.294 10 H -0.281 1.281 11 C 0.286 3.714 12 H 0.098 0.902 13 C -0.248 4.248 14 C 0.048 3.952 15 N -0.350 5.350 16 N -0.384 5.384 17 C 0.097 3.903 18 C 0.062 3.938 19 C -0.051 4.051 20 C -0.123 4.123 21 C -0.089 4.089 22 C -0.165 4.165 23 C 0.054 3.946 24 F -0.163 7.163 25 C -0.142 4.142 26 H 0.037 0.963 27 H 0.006 0.994 28 H 0.016 0.984 29 H 0.245 0.755 30 H 0.171 0.829 31 H 0.083 0.917 32 H 0.118 0.882 33 H 0.082 0.918 34 H 0.214 0.786 35 H 0.157 0.843 36 H 0.168 0.832 37 H 0.148 0.852 38 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.699 -17.812 -1.607 19.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.325 5.325 3 C -0.361 4.361 4 H 0.104 0.896 5 C -0.237 4.237 6 N -0.569 5.569 7 Si 0.749 3.251 8 H -0.219 1.219 9 H -0.220 1.220 10 H -0.208 1.208 11 C 0.178 3.822 12 H 0.115 0.885 13 C -0.261 4.261 14 C -0.137 4.137 15 N -0.173 5.173 16 N -0.167 5.167 17 C -0.043 4.043 18 C -0.085 4.085 19 C -0.054 4.054 20 C -0.141 4.141 21 C -0.107 4.107 22 C -0.184 4.184 23 C 0.035 3.965 24 F -0.142 7.142 25 C -0.162 4.162 26 H 0.056 0.944 27 H 0.024 0.976 28 H 0.035 0.965 29 H 0.055 0.945 30 H 0.188 0.812 31 H 0.102 0.898 32 H 0.136 0.864 33 H 0.101 0.899 34 H 0.230 0.770 35 H 0.174 0.826 36 H 0.185 0.815 37 H 0.166 0.834 38 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 7.402 -17.405 -0.477 18.919 hybrid contribution 0.073 2.039 -0.858 2.214 sum 7.474 -15.365 -1.335 17.139 Atomic orbital electron populations 1.20783 0.81815 0.95293 0.98752 1.44197 1.02076 1.00885 1.85361 1.19386 0.91959 0.84609 1.40185 0.89604 1.25255 0.96206 0.99452 1.02778 1.70372 1.09906 1.25580 1.51031 0.86030 0.78286 0.81243 0.79496 1.21881 1.22047 1.20754 1.17650 0.89689 0.88406 0.86496 0.88456 1.20855 1.09095 0.92075 1.04068 1.24403 0.94938 1.01473 0.92850 1.77259 1.25130 0.90330 1.24620 1.48800 1.38414 1.04581 1.24892 1.22126 0.96174 0.92302 0.93720 1.22718 0.94938 1.00737 0.90105 1.20502 0.93543 0.93369 0.97962 1.21428 1.00615 0.98212 0.93888 1.21301 0.93657 0.98500 0.97202 1.21304 1.01952 0.95221 0.99911 1.18185 0.90157 0.90621 0.97499 1.91402 1.61830 1.66627 1.94296 1.21263 0.97276 1.00699 0.96950 0.94438 0.97594 0.96520 0.94524 0.81216 0.89829 0.86403 0.89881 0.76955 0.82570 0.81451 0.83401 0.87322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.39 9.06 127.77 1.16 9.55 16 2 N -0.60 -28.16 2.80 -711.21 -1.99 -30.15 16 3 C -0.23 -12.12 6.08 84.03 0.51 -11.61 16 4 H 0.09 4.50 3.46 -2.91 -0.01 4.49 16 5 C -0.04 -2.34 5.23 84.86 0.44 -1.90 16 6 N -0.92 -53.69 10.02 21.65 0.22 -53.47 16 7 Si 0.92 46.43 29.62 68.60 2.03 48.46 16 8 H -0.29 -14.94 7.11 99.48 0.71 -14.23 16 9 H -0.29 -14.91 7.11 99.48 0.71 -14.20 16 10 H -0.28 -13.97 7.11 99.48 0.71 -13.26 16 11 C 0.29 10.43 2.95 43.50 0.13 10.56 16 12 H 0.10 2.98 7.30 -2.39 -0.02 2.96 16 13 C -0.25 -9.01 4.79 -20.14 -0.10 -9.11 16 14 C 0.05 2.04 10.32 85.24 0.88 2.92 16 15 N -0.35 -13.93 12.58 -57.02 -0.72 -14.64 16 16 N -0.38 -11.30 4.01 -369.55 -1.48 -12.78 16 17 C 0.10 1.66 11.47 127.77 1.47 3.12 16 18 C 0.06 1.73 11.40 83.54 0.95 2.68 16 19 C -0.05 -1.76 4.95 -19.87 -0.10 -1.86 16 20 C -0.12 -3.16 9.67 22.27 0.22 -2.94 16 21 C -0.09 -2.02 10.04 22.26 0.22 -1.80 16 22 C -0.17 -4.58 10.03 22.31 0.22 -4.36 16 23 C 0.05 1.98 7.30 22.38 0.16 2.15 16 24 F -0.16 -6.35 17.27 44.97 0.78 -5.57 16 25 C -0.14 -5.68 8.29 22.31 0.19 -5.50 16 26 H 0.04 1.43 7.57 -2.39 -0.02 1.41 16 27 H 0.01 0.30 7.42 -2.38 -0.02 0.28 16 28 H 0.02 0.86 6.85 -2.39 -0.02 0.84 16 29 H 0.24 14.13 8.31 -92.71 -0.77 13.36 16 30 H 0.17 8.40 5.04 -2.92 -0.01 8.38 16 31 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.12 1.16 8.14 -2.38 -0.02 1.14 16 33 H 0.08 1.44 8.14 -2.38 -0.02 1.42 16 34 H 0.21 3.63 8.06 -2.91 -0.02 3.60 16 35 H 0.16 2.90 7.95 -2.91 -0.02 2.88 16 36 H 0.17 2.35 8.06 -2.91 -0.02 2.33 16 37 H 0.15 3.28 8.06 -2.91 -0.02 3.26 16 38 H 0.11 5.02 5.18 -2.91 -0.02 5.01 16 Total: -1.00 -71.68 316.90 6.28 -65.40 By element: Atomic # 1 Polarization: 9.76 SS G_CDS: 1.09 Total: 10.84 kcal Atomic # 6 Polarization: -14.45 SS G_CDS: 6.36 Total: -8.09 kcal Atomic # 7 Polarization: -107.08 SS G_CDS: -3.97 Total: -111.05 kcal Atomic # 9 Polarization: -6.35 SS G_CDS: 0.78 Total: -5.57 kcal Atomic # 14 Polarization: 46.43 SS G_CDS: 2.03 Total: 48.46 kcal Total: -71.68 6.28 -65.40 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000523440620.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.243 kcal (2) G-P(sol) polarization free energy of solvation -71.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.403 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds