Wall clock time and date at job start Tue Mar 31 2020 05:40:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.39753 * 125.83557 * 2 1 4 4 C 1.36105 * 107.82545 * 180.02562 * 3 2 1 5 5 N 1.39474 * 126.21666 * 180.02562 * 4 3 2 6 6 C 1.34773 * 120.00130 * 359.97438 * 5 4 3 7 7 O 1.21293 * 119.99983 * 0.02562 * 6 5 4 8 8 C 1.50705 * 120.00446 * 179.97438 * 6 5 4 9 9 C 1.50698 * 109.47138 * 180.02562 * 8 6 5 10 10 C 1.39872 * 125.89569 * 125.00610 * 9 8 6 11 11 C 1.35312 * 107.91860 * 180.02562 * 10 9 8 12 12 N 1.34958 * 107.74792 * 359.97438 * 11 10 9 13 13 H 0.97001 * 126.03318 * 180.02562 * 12 11 10 14 14 N 1.30839 * 125.90042 * 304.69097 * 9 8 6 15 15 N 1.35261 * 107.57406 * 0.02562 * 4 3 2 16 16 C 1.46491 * 126.05417 * 179.97438 * 15 4 3 17 17 C 1.50702 * 109.46957 * 89.99946 * 16 15 4 18 18 H 1.08002 * 120.00299 * 0.02562 * 17 16 15 19 19 C 1.37884 * 119.99942 * 179.72213 * 17 16 15 20 20 N 1.31514 * 119.99698 * 0.28408 * 19 17 16 21 21 Si 1.86794 * 119.99837 * 180.27476 * 19 17 16 22 22 H 1.48501 * 109.47188 * 90.00793 * 21 19 17 23 23 H 1.48501 * 109.47085 * 210.00372 * 21 19 17 24 24 H 1.48498 * 109.47634 * 330.00608 * 21 19 17 25 25 N 1.30851 * 125.83602 * 180.32103 * 2 1 3 26 26 H 1.09004 * 109.46881 * 90.00440 * 1 2 3 27 27 H 1.09003 * 109.47025 * 209.99602 * 1 2 3 28 28 H 1.08998 * 109.47195 * 329.99863 * 1 2 3 29 29 H 1.07997 * 126.08789 * 0.06841 * 3 2 1 30 30 H 0.97007 * 120.00357 * 180.02562 * 5 4 3 31 31 H 1.08994 * 109.46860 * 300.00590 * 8 6 5 32 32 H 1.09006 * 109.46313 * 60.00224 * 8 6 5 33 33 H 1.07995 * 126.04160 * 0.02562 * 10 9 8 34 34 H 1.08001 * 126.12807 * 179.97438 * 11 10 9 35 35 H 1.09004 * 109.47166 * 330.00212 * 16 15 4 36 36 H 1.08994 * 109.47507 * 209.99918 * 16 15 4 37 37 H 0.97005 * 119.99651 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3253 1.1330 0.0000 4 6 3.6196 0.7122 -0.0006 5 7 4.7512 1.5275 -0.0003 6 6 4.6157 2.8684 0.0002 7 8 3.5096 3.3661 0.0007 8 6 5.8384 3.7495 0.0011 9 6 5.4153 5.1958 0.0020 10 6 5.8087 6.1647 0.9309 11 6 5.2170 7.3329 0.5899 12 7 4.4759 7.1112 -0.5160 13 1 3.9406 7.7698 -0.9856 14 7 4.6211 5.7635 -0.8692 15 7 3.6093 -0.6404 -0.0015 16 6 4.7871 -1.5116 -0.0029 17 6 5.1919 -1.8112 1.4175 18 1 4.6279 -1.3948 2.2391 19 6 6.2784 -2.6222 1.6682 20 7 6.9649 -3.1297 0.6677 21 14 6.7755 -2.9999 3.4287 22 1 6.0706 -4.2226 3.8907 23 1 8.2426 -3.2206 3.4923 24 1 6.4085 -1.8569 4.3028 25 7 2.2732 -1.0608 -0.0059 26 1 -0.3633 -0.0001 -1.0277 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3633 0.8900 0.5138 29 1 1.9902 2.1596 0.0010 30 1 5.6359 1.1295 -0.0011 31 1 6.4331 3.5446 0.8912 32 1 6.4339 3.5452 -0.8888 33 1 6.4681 6.0082 1.7717 34 1 5.3195 8.2741 1.1096 35 1 5.6081 -1.0117 -0.5169 36 1 4.5496 -2.4428 -0.5172 37 1 7.7295 -3.6999 0.8441 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000530568978.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:07 Heat of formation + Delta-G solvation = 90.689955 kcal Electronic energy + Delta-G solvation = -22110.886627 eV Core-core repulsion = 18697.727164 eV Total energy + Delta-G solvation = -3413.159463 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.128 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.44140 -41.99086 -40.36674 -36.22723 -35.54867 -34.00622 -33.79202 -30.94069 -30.79065 -30.32328 -28.89150 -27.79362 -24.79249 -23.53311 -22.27681 -21.33464 -20.97711 -20.23603 -18.96204 -18.85133 -18.32014 -17.70167 -16.76553 -16.65687 -16.07640 -15.79855 -15.46135 -15.14913 -14.62290 -14.46015 -14.32990 -14.31767 -14.03574 -13.78540 -13.56999 -13.36941 -13.11096 -13.06870 -12.84254 -12.69925 -12.27072 -11.87784 -11.65958 -11.56648 -11.41818 -10.88314 -10.74312 -10.34238 -9.61627 -9.57248 -9.03841 -8.34146 -6.51611 0.84131 1.02639 1.37268 1.38882 1.41771 1.52079 1.67688 1.88236 2.08536 2.10662 2.30178 2.40946 2.96430 3.52852 3.78139 3.84264 4.06905 4.27305 4.38554 4.51561 4.64522 4.74051 4.79226 4.85918 4.88184 4.91775 4.93643 4.96646 5.14701 5.22101 5.25349 5.53407 5.72017 5.79145 5.97051 6.19120 6.34046 6.56020 6.59913 6.80861 7.00995 7.08472 7.20625 8.72458 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.013767 B = 0.004516 C = 0.003629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2033.417818 B = 6198.557472 C = 7713.636661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.057 3.943 3 C -0.311 4.311 4 C 0.304 3.696 5 N -0.639 5.639 6 C 0.520 3.480 7 O -0.532 6.532 8 C -0.048 4.048 9 C 0.067 3.933 10 C -0.285 4.285 11 C 0.068 3.932 12 N -0.476 5.476 13 H 0.449 0.551 14 N -0.316 5.316 15 N -0.367 5.367 16 C 0.272 3.728 17 C -0.556 4.556 18 H 0.047 0.953 19 C 0.029 3.971 20 N -0.914 5.914 21 Si 0.970 3.030 22 H -0.279 1.279 23 H -0.268 1.268 24 H -0.270 1.270 25 N -0.333 5.333 26 H 0.088 0.912 27 H 0.073 0.927 28 H 0.091 0.909 29 H 0.162 0.838 30 H 0.424 0.576 31 H 0.151 0.849 32 H 0.138 0.862 33 H 0.169 0.831 34 H 0.221 0.779 35 H 0.051 0.949 36 H 0.026 0.974 37 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.132 20.153 0.197 20.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.108 4.108 3 C -0.343 4.343 4 C 0.081 3.919 5 N -0.288 5.288 6 C 0.308 3.692 7 O -0.406 6.406 8 C -0.089 4.089 9 C -0.100 4.100 10 C -0.314 4.314 11 C -0.079 4.079 12 N -0.185 5.185 13 H 0.295 0.705 14 N -0.140 5.140 15 N -0.152 5.152 16 C 0.153 3.847 17 C -0.594 4.594 18 H 0.065 0.935 19 C -0.173 4.173 20 N -0.552 5.552 21 Si 0.794 3.206 22 H -0.204 1.204 23 H -0.192 1.192 24 H -0.194 1.194 25 N -0.158 5.158 26 H 0.107 0.893 27 H 0.092 0.908 28 H 0.109 0.891 29 H 0.180 0.820 30 H 0.262 0.738 31 H 0.169 0.831 32 H 0.155 0.845 33 H 0.187 0.813 34 H 0.237 0.763 35 H 0.068 0.932 36 H 0.044 0.956 37 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -0.979 18.932 -0.909 18.979 hybrid contribution 0.980 0.352 1.101 1.516 sum 0.001 19.284 0.193 19.285 Atomic orbital electron populations 1.20211 0.84039 1.03805 1.03790 1.22863 0.98700 0.90096 0.99122 1.21422 0.89344 1.00567 1.22976 1.18318 0.89687 0.82834 1.01103 1.42991 1.07502 1.05862 1.72428 1.21270 0.92540 0.80575 0.74827 1.90643 1.28438 1.73824 1.47700 1.20111 0.94066 0.85755 1.08929 1.21805 0.97116 0.95909 0.95132 1.21782 1.11682 0.92293 1.05605 1.23273 0.93201 1.01672 0.89780 1.46442 1.39759 1.08519 1.23814 0.70513 1.77324 1.21388 0.90420 1.24914 1.49164 1.06278 1.02861 1.56925 1.19245 0.78611 0.88949 0.97895 1.21404 1.13855 1.32555 0.91558 0.93473 1.25676 0.95323 0.94257 1.02055 1.69994 1.19620 1.32674 1.32892 0.85377 0.77873 0.78570 0.78785 1.20441 1.19236 1.19419 1.77289 0.86524 1.23528 1.28427 0.89313 0.90763 0.89053 0.82045 0.73820 0.83105 0.84463 0.81324 0.76291 0.93155 0.95635 0.91623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.79 10.44 71.24 0.74 -1.05 16 2 C 0.06 2.41 7.21 43.07 0.31 2.72 16 3 C -0.31 -13.47 9.58 22.14 0.21 -13.26 16 4 C 0.30 13.41 7.66 131.32 1.01 14.41 16 5 N -0.64 -22.67 5.42 -308.56 -1.67 -24.34 16 6 C 0.52 16.73 7.78 87.66 0.68 17.41 16 7 O -0.53 -20.84 12.70 -3.07 -0.04 -20.88 16 8 C -0.05 -1.03 6.28 29.10 0.18 -0.84 16 9 C 0.07 1.65 6.01 43.10 0.26 1.91 16 10 C -0.28 -5.21 10.72 21.99 0.24 -4.98 16 11 C 0.07 0.96 11.99 83.54 1.00 1.96 16 12 N -0.48 -8.82 7.36 -57.59 -0.42 -9.24 16 13 H 0.45 5.38 8.96 -213.33 -1.91 3.47 16 14 N -0.32 -8.80 12.06 -47.38 -0.57 -9.37 16 15 N -0.37 -18.08 3.60 -348.74 -1.26 -19.34 16 16 C 0.27 14.15 6.01 85.64 0.51 14.66 16 17 C -0.56 -30.47 9.39 25.60 0.24 -30.23 16 18 H 0.05 2.71 7.81 -2.91 -0.02 2.69 16 19 C 0.03 1.51 5.46 84.66 0.46 1.98 16 20 N -0.91 -49.89 13.29 21.45 0.28 -49.60 16 21 Si 0.97 41.89 29.54 68.60 2.03 43.91 16 22 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 23 H -0.27 -10.85 7.11 99.48 0.71 -10.14 16 24 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 25 N -0.33 -16.32 12.57 -47.44 -0.60 -16.91 16 26 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 27 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 28 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 29 H 0.16 6.93 5.83 -2.91 -0.02 6.91 16 30 H 0.42 13.40 7.96 -92.70 -0.74 12.67 16 31 H 0.15 2.27 8.12 -2.39 -0.02 2.25 16 32 H 0.14 2.33 8.14 -2.38 -0.02 2.31 16 33 H 0.17 2.22 8.06 -2.91 -0.02 2.19 16 34 H 0.22 0.85 8.06 -2.91 -0.02 0.83 16 35 H 0.05 2.50 7.50 -2.38 -0.02 2.49 16 36 H 0.03 1.46 8.14 -2.39 -0.02 1.44 16 37 H 0.27 13.98 8.31 -92.70 -0.77 13.21 16 Total: -1.00 -78.32 327.70 2.08 -76.24 By element: Atomic # 1 Polarization: 26.35 SS G_CDS: -1.52 Total: 24.83 kcal Atomic # 6 Polarization: -1.15 SS G_CDS: 5.85 Total: 4.70 kcal Atomic # 7 Polarization: -124.57 SS G_CDS: -4.23 Total: -128.80 kcal Atomic # 8 Polarization: -20.84 SS G_CDS: -0.04 Total: -20.88 kcal Atomic # 14 Polarization: 41.89 SS G_CDS: 2.03 Total: 43.91 kcal Total: -78.32 2.08 -76.24 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000530568978.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.929 kcal (2) G-P(sol) polarization free energy of solvation -78.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.239 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds