Wall clock time and date at job start Tue Mar 31 2020 06:46:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86797 * 120.00274 * 2 1 4 4 H 1.48498 * 109.47332 * 270.00287 * 3 2 1 5 5 H 1.48504 * 109.47028 * 30.00439 * 3 2 1 6 6 H 1.48496 * 109.47430 * 150.00262 * 3 2 1 7 7 C 1.37878 * 120.00030 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00191 * 359.97438 * 7 2 1 9 9 C 1.50695 * 120.00228 * 179.97438 * 7 2 1 10 10 C 1.52996 * 109.47467 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.47377 * 180.02562 * 10 9 7 12 12 N 1.46502 * 109.47312 * 180.02562 * 11 10 9 13 13 C 1.34784 * 120.00119 * 180.02562 * 12 11 10 14 14 O 1.21271 * 119.99851 * 359.97438 * 13 12 11 15 15 C 1.50694 * 119.99575 * 179.97438 * 13 12 11 16 16 C 1.50708 * 109.47053 * 179.97438 * 15 13 12 17 17 C 1.38261 * 119.97948 * 270.02600 * 16 15 13 18 18 C 1.38295 * 120.04146 * 179.97438 * 17 16 15 19 19 C 1.37831 * 119.96871 * 359.96675 * 18 17 16 20 20 C 1.38773 * 120.01371 * 0.02562 * 19 18 17 21 21 C 1.37967 * 120.01385 * 0.02562 * 20 19 18 22 22 C 1.51082 * 107.29752 * 180.02562 * 20 19 18 23 23 O 1.43951 * 105.95349 * 342.32532 * 22 20 19 24 24 C 1.43941 * 104.94972 * 28.44560 * 23 22 20 25 25 H 0.97003 * 119.99695 * 359.97438 * 1 2 3 26 26 H 1.09002 * 109.47124 * 59.99872 * 9 7 2 27 27 H 1.09000 * 109.47581 * 299.99838 * 9 7 2 28 28 H 1.08995 * 109.47189 * 60.00031 * 10 9 7 29 29 H 1.08998 * 109.47349 * 300.00049 * 10 9 7 30 30 H 1.09002 * 109.47176 * 60.00162 * 11 10 9 31 31 H 1.09000 * 109.47619 * 300.00073 * 11 10 9 32 32 H 0.97004 * 120.00008 * 359.97438 * 12 11 10 33 33 H 1.08995 * 109.47590 * 59.99909 * 15 13 12 34 34 H 1.08998 * 109.47556 * 299.99555 * 15 13 12 35 35 H 1.08005 * 119.97619 * 359.97172 * 17 16 15 36 36 H 1.08004 * 120.04045 * 179.97438 * 18 17 16 37 37 H 1.08001 * 120.03936 * 179.97438 * 21 20 19 38 38 H 1.09005 * 110.15139 * 223.20795 * 22 20 19 39 39 H 1.08990 * 110.15650 * 101.44695 * 22 20 19 40 40 H 1.09002 * 110.15431 * 90.68060 * 24 23 22 41 41 H 1.09004 * 110.15347 * 212.36657 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6526 0.7002 6 1 3.5467 1.4401 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0215 -2.6366 -0.0010 11 6 5.5514 -2.6366 -0.0009 12 7 6.0398 -4.0178 -0.0014 13 6 7.3649 -4.2641 -0.0010 14 8 8.1530 -3.3423 -0.0006 15 6 7.8671 -5.6849 -0.0009 16 6 9.3742 -5.6850 -0.0010 17 6 10.0650 -5.6846 -1.1986 18 6 11.4480 -5.6842 -1.2002 19 6 12.1378 -5.6834 -0.0069 20 6 11.4450 -5.6837 1.1955 21 6 10.0653 -5.6852 1.1969 22 6 12.4705 -5.6821 2.3049 23 8 13.7079 -6.1012 1.7005 24 6 13.6113 -5.6812 0.3271 25 1 -0.4850 0.8401 0.0004 26 1 3.8752 -0.6805 0.8888 27 1 3.8745 -0.6801 -0.8911 28 1 3.6578 -3.1506 -0.8907 29 1 3.6585 -3.1502 0.8892 30 1 5.9148 -2.1227 0.8890 31 1 5.9149 -2.1228 -0.8909 32 1 5.4095 -4.7551 -0.0014 33 1 7.5042 -6.1987 -0.8910 34 1 7.5036 -6.1988 0.8889 35 1 9.5243 -5.6847 -2.1335 36 1 11.9876 -5.6842 -2.1357 37 1 9.5257 -5.6858 2.1324 38 1 12.1785 -6.3827 3.0872 39 1 12.5752 -4.6790 2.7181 40 1 14.0211 -4.6778 0.2115 41 1 14.1436 -6.3804 -0.3178 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000542554136.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:51 Heat of formation + Delta-G solvation = -66.027012 kcal Electronic energy + Delta-G solvation = -21398.889715 eV Core-core repulsion = 18050.182087 eV Total energy + Delta-G solvation = -3348.707628 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.00161 -39.65889 -37.71698 -35.55459 -33.39094 -33.04749 -31.78876 -31.48544 -29.32414 -27.84241 -26.75032 -24.54160 -22.89720 -22.01929 -21.32511 -20.71370 -19.81125 -17.16708 -16.92428 -16.74697 -16.67390 -16.42810 -15.94587 -15.51296 -15.10257 -14.60584 -14.34860 -14.16783 -13.87894 -13.63491 -13.42730 -12.88637 -12.82692 -12.72344 -12.42967 -12.25685 -11.97748 -11.86958 -11.65267 -11.14161 -11.11811 -10.91968 -10.39907 -10.23776 -10.00841 -9.81500 -9.63161 -9.26005 -9.10810 -8.90954 -8.71569 -8.58249 -6.09013 -4.07876 0.91251 1.07981 2.66476 3.13969 3.29119 3.36851 3.40981 3.55086 3.58659 3.86815 4.29544 4.41931 4.42835 4.61600 4.83645 4.89769 5.01787 5.03697 5.05664 5.15251 5.21374 5.22184 5.25024 5.37910 5.52362 5.60596 5.61894 5.76824 5.97452 5.99106 6.01948 6.25014 6.30677 6.37341 6.40524 6.63508 6.65741 6.75501 7.19259 7.32699 7.57818 7.73650 8.27888 8.47399 8.94626 9.53204 11.04152 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.035660 B = 0.002309 C = 0.002265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.998973 B =12123.638430 C =12360.912732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.066 3.934 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.265 1.265 7 C -0.523 4.523 8 H 0.072 0.928 9 C -0.011 4.011 10 C -0.113 4.113 11 C 0.114 3.886 12 N -0.727 5.727 13 C 0.508 3.492 14 O -0.537 6.537 15 C -0.104 4.104 16 C -0.055 4.055 17 C -0.099 4.099 18 C -0.091 4.091 19 C -0.137 4.137 20 C -0.133 4.133 21 C -0.078 4.078 22 C 0.092 3.908 23 O -0.363 6.363 24 C 0.092 3.908 25 H 0.263 0.737 26 H 0.018 0.982 27 H 0.014 0.986 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.400 0.600 33 H 0.105 0.895 34 H 0.104 0.896 35 H 0.128 0.872 36 H 0.125 0.875 37 H 0.124 0.876 38 H 0.097 0.903 39 H 0.078 0.922 40 H 0.077 0.923 41 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.907 -15.723 0.210 28.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.135 4.135 3 Si 0.707 3.293 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.189 1.189 7 C -0.560 4.560 8 H 0.090 0.910 9 C -0.049 4.049 10 C -0.151 4.151 11 C -0.009 4.009 12 N -0.378 5.378 13 C 0.294 3.706 14 O -0.413 6.413 15 C -0.144 4.144 16 C -0.056 4.056 17 C -0.117 4.117 18 C -0.109 4.109 19 C -0.137 4.137 20 C -0.133 4.133 21 C -0.096 4.096 22 C 0.015 3.985 23 O -0.282 6.282 24 C 0.016 3.984 25 H 0.073 0.927 26 H 0.037 0.963 27 H 0.032 0.968 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.234 0.766 33 H 0.123 0.877 34 H 0.122 0.878 35 H 0.145 0.855 36 H 0.143 0.857 37 H 0.142 0.858 38 H 0.115 0.885 39 H 0.096 0.904 40 H 0.095 0.905 41 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 24.497 -15.027 0.323 28.740 hybrid contribution -0.326 0.773 -0.170 0.856 sum 24.171 -14.254 0.153 28.061 Atomic orbital electron populations 1.69912 1.06307 1.26974 1.50933 1.25033 0.94763 0.99257 0.94460 0.86773 0.80393 0.83517 0.78595 1.20243 1.21343 1.18919 1.21088 0.89288 0.94507 1.51162 0.91006 1.19504 0.97294 0.91486 0.96651 1.21701 0.90607 1.01053 1.01734 1.21649 0.96137 0.81183 1.01892 1.46182 1.06618 1.10043 1.74975 1.20449 0.82568 0.90912 0.76687 1.90727 1.55296 1.46245 1.49071 1.20700 0.92662 0.95490 1.05562 1.19247 0.93940 0.99267 0.93123 1.20974 0.93749 0.99275 0.97703 1.20274 0.93760 1.00278 0.96622 1.21013 0.96207 1.02144 0.94314 1.20986 0.94529 1.01940 0.95821 1.20188 0.91987 0.99498 0.97928 1.21746 0.81602 1.01014 0.94110 1.89071 1.36364 1.80760 1.21974 1.21730 0.92147 1.00873 0.83694 0.92679 0.96335 0.96763 0.92104 0.92086 0.91839 0.91846 0.76598 0.87693 0.87758 0.85455 0.85670 0.85771 0.88484 0.90403 0.90528 0.88588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.55 13.96 55.43 0.77 -26.78 16 2 C 0.07 1.91 5.47 -17.82 -0.10 1.82 16 3 Si 0.88 21.63 27.47 -169.99 -4.67 16.96 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 6 H -0.26 -6.27 6.54 56.52 0.37 -5.90 16 7 C -0.52 -14.58 9.66 -34.44 -0.33 -14.91 16 8 H 0.07 2.13 7.99 -52.49 -0.42 1.71 16 9 C -0.01 -0.26 4.04 -27.89 -0.11 -0.38 16 10 C -0.11 -2.05 5.27 -26.74 -0.14 -2.19 16 11 C 0.11 1.83 5.67 -4.04 -0.02 1.81 16 12 N -0.73 -9.17 5.56 -60.30 -0.33 -9.50 16 13 C 0.51 6.64 7.82 -10.99 -0.09 6.55 16 14 O -0.54 -9.41 16.03 5.56 0.09 -9.32 16 15 C -0.10 -0.91 5.83 -29.03 -0.17 -1.08 16 16 C -0.06 -0.58 4.38 -104.59 -0.46 -1.03 16 17 C -0.10 -0.99 9.70 -39.55 -0.38 -1.37 16 18 C -0.09 -0.86 10.03 -39.71 -0.40 -1.26 16 19 C -0.14 -1.37 6.33 -104.38 -0.66 -2.03 16 20 C -0.13 -1.38 6.33 -104.34 -0.66 -2.04 16 21 C -0.08 -0.81 9.70 -39.66 -0.38 -1.20 16 22 C 0.09 0.82 7.63 36.19 0.28 1.09 16 23 O -0.36 -3.71 11.72 -35.23 -0.41 -4.12 16 24 C 0.09 0.78 7.63 36.19 0.28 1.06 16 25 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 26 H 0.02 0.43 7.20 -51.93 -0.37 0.06 16 27 H 0.01 0.33 7.57 -51.93 -0.39 -0.07 16 28 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 29 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 30 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 31 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.40 3.85 8.47 -40.82 -0.35 3.51 16 33 H 0.10 0.67 8.08 -51.93 -0.42 0.25 16 34 H 0.10 0.67 8.09 -51.93 -0.42 0.25 16 35 H 0.13 1.05 8.06 -52.48 -0.42 0.62 16 36 H 0.13 0.88 8.06 -52.48 -0.42 0.45 16 37 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 38 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16 LS Contribution 346.00 15.07 5.21 5.21 Total: -1.00 -34.51 346.00 -8.88 -43.39 By element: Atomic # 1 Polarization: 5.51 SS G_CDS: -6.19 Total: -0.68 kcal Atomic # 6 Polarization: -11.81 SS G_CDS: -3.36 Total: -15.17 kcal Atomic # 7 Polarization: -36.72 SS G_CDS: 0.44 Total: -36.28 kcal Atomic # 8 Polarization: -13.12 SS G_CDS: -0.32 Total: -13.44 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.67 Total: 16.96 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -34.51 -8.88 -43.39 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000542554136.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.635 kcal (2) G-P(sol) polarization free energy of solvation -34.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds