Wall clock time and date at job start Tue Mar 31 2020 06:46:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86797 * 120.00274 * 2 1 4 4 H 1.48498 * 109.47332 * 270.00287 * 3 2 1 5 5 H 1.48504 * 109.47028 * 30.00439 * 3 2 1 6 6 H 1.48496 * 109.47430 * 150.00262 * 3 2 1 7 7 C 1.37878 * 120.00030 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00191 * 359.97438 * 7 2 1 9 9 C 1.50695 * 120.00228 * 179.97438 * 7 2 1 10 10 C 1.52996 * 109.47467 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.47377 * 180.02562 * 10 9 7 12 12 N 1.46502 * 109.47312 * 180.02562 * 11 10 9 13 13 C 1.34784 * 120.00119 * 180.02562 * 12 11 10 14 14 O 1.21271 * 119.99851 * 359.97438 * 13 12 11 15 15 C 1.50694 * 119.99575 * 179.97438 * 13 12 11 16 16 C 1.50708 * 109.47053 * 179.97438 * 15 13 12 17 17 C 1.38261 * 119.97948 * 270.02600 * 16 15 13 18 18 C 1.38295 * 120.04146 * 179.97438 * 17 16 15 19 19 C 1.37831 * 119.96871 * 359.96675 * 18 17 16 20 20 C 1.38773 * 120.01371 * 0.02562 * 19 18 17 21 21 C 1.37967 * 120.01385 * 0.02562 * 20 19 18 22 22 C 1.51082 * 107.29752 * 180.02562 * 20 19 18 23 23 O 1.43951 * 105.95349 * 342.32532 * 22 20 19 24 24 C 1.43941 * 104.94972 * 28.44560 * 23 22 20 25 25 H 0.97003 * 119.99695 * 359.97438 * 1 2 3 26 26 H 1.09002 * 109.47124 * 59.99872 * 9 7 2 27 27 H 1.09000 * 109.47581 * 299.99838 * 9 7 2 28 28 H 1.08995 * 109.47189 * 60.00031 * 10 9 7 29 29 H 1.08998 * 109.47349 * 300.00049 * 10 9 7 30 30 H 1.09002 * 109.47176 * 60.00162 * 11 10 9 31 31 H 1.09000 * 109.47619 * 300.00073 * 11 10 9 32 32 H 0.97004 * 120.00008 * 359.97438 * 12 11 10 33 33 H 1.08995 * 109.47590 * 59.99909 * 15 13 12 34 34 H 1.08998 * 109.47556 * 299.99555 * 15 13 12 35 35 H 1.08005 * 119.97619 * 359.97172 * 17 16 15 36 36 H 1.08004 * 120.04045 * 179.97438 * 18 17 16 37 37 H 1.08001 * 120.03936 * 179.97438 * 21 20 19 38 38 H 1.09005 * 110.15139 * 223.20795 * 22 20 19 39 39 H 1.08990 * 110.15650 * 101.44695 * 22 20 19 40 40 H 1.09002 * 110.15431 * 90.68060 * 24 23 22 41 41 H 1.09004 * 110.15347 * 212.36657 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6526 0.7002 6 1 3.5467 1.4401 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0215 -2.6366 -0.0010 11 6 5.5514 -2.6366 -0.0009 12 7 6.0398 -4.0178 -0.0014 13 6 7.3649 -4.2641 -0.0010 14 8 8.1530 -3.3423 -0.0006 15 6 7.8671 -5.6849 -0.0009 16 6 9.3742 -5.6850 -0.0010 17 6 10.0650 -5.6846 -1.1986 18 6 11.4480 -5.6842 -1.2002 19 6 12.1378 -5.6834 -0.0069 20 6 11.4450 -5.6837 1.1955 21 6 10.0653 -5.6852 1.1969 22 6 12.4705 -5.6821 2.3049 23 8 13.7079 -6.1012 1.7005 24 6 13.6113 -5.6812 0.3271 25 1 -0.4850 0.8401 0.0004 26 1 3.8752 -0.6805 0.8888 27 1 3.8745 -0.6801 -0.8911 28 1 3.6578 -3.1506 -0.8907 29 1 3.6585 -3.1502 0.8892 30 1 5.9148 -2.1227 0.8890 31 1 5.9149 -2.1228 -0.8909 32 1 5.4095 -4.7551 -0.0014 33 1 7.5042 -6.1987 -0.8910 34 1 7.5036 -6.1988 0.8889 35 1 9.5243 -5.6847 -2.1335 36 1 11.9876 -5.6842 -2.1357 37 1 9.5257 -5.6858 2.1324 38 1 12.1785 -6.3827 3.0872 39 1 12.5752 -4.6790 2.7181 40 1 14.0211 -4.6778 0.2115 41 1 14.1436 -6.3804 -0.3178 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000542554136.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:50 Heat of formation + Delta-G solvation = -89.081919 kcal Electronic energy + Delta-G solvation = -21399.889451 eV Core-core repulsion = 18050.182087 eV Total energy + Delta-G solvation = -3349.707364 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.70861 -40.66903 -38.47147 -36.94877 -35.13171 -33.91909 -33.18324 -32.47386 -30.21723 -28.95305 -27.92681 -25.39916 -24.39474 -22.69757 -22.26438 -22.13607 -20.95130 -18.98296 -17.94852 -17.65109 -17.40061 -17.23973 -16.88799 -16.67967 -16.27619 -15.93679 -15.49860 -15.20308 -14.80944 -14.73395 -14.70933 -14.10304 -13.83599 -13.70764 -13.57371 -13.45742 -12.98399 -12.91850 -12.72731 -12.66871 -12.34268 -11.92430 -11.80786 -11.77579 -11.59587 -11.33455 -11.12758 -10.85914 -10.76855 -10.06171 -9.82203 -9.43027 -8.30016 -6.33708 0.18608 0.36728 1.35959 1.37796 1.49323 1.67569 2.21952 2.35510 2.74531 2.93246 3.05703 3.18894 3.63264 3.72431 3.96060 4.01332 4.16265 4.19722 4.26400 4.37359 4.40367 4.43527 4.50873 4.52664 4.59163 4.63077 4.74232 4.88868 4.90528 4.96643 5.03985 5.09328 5.29758 5.32054 5.41164 5.52080 5.54259 5.55711 5.64832 5.68922 5.95504 6.26941 6.61949 6.74637 7.30235 7.31295 8.86254 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.035660 B = 0.002309 C = 0.002265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.998973 B =12123.638430 C =12360.912732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.004 3.996 3 Si 0.947 3.053 4 H -0.268 1.268 5 H -0.285 1.285 6 H -0.249 1.249 7 C -0.530 4.530 8 H 0.039 0.961 9 C -0.013 4.013 10 C -0.100 4.100 11 C 0.127 3.873 12 N -0.718 5.718 13 C 0.509 3.491 14 O -0.585 6.585 15 C -0.093 4.093 16 C -0.071 4.071 17 C -0.111 4.111 18 C -0.099 4.099 19 C -0.151 4.151 20 C -0.151 4.151 21 C -0.093 4.093 22 C 0.090 3.910 23 O -0.380 6.380 24 C 0.090 3.910 25 H 0.266 0.734 26 H 0.019 0.981 27 H 0.018 0.982 28 H 0.066 0.934 29 H 0.065 0.935 30 H 0.053 0.947 31 H 0.054 0.946 32 H 0.417 0.583 33 H 0.135 0.865 34 H 0.132 0.868 35 H 0.142 0.858 36 H 0.146 0.854 37 H 0.135 0.865 38 H 0.111 0.889 39 H 0.082 0.918 40 H 0.085 0.915 41 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.476 -16.318 -0.069 30.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.193 4.193 3 Si 0.771 3.229 4 H -0.193 1.193 5 H -0.210 1.210 6 H -0.173 1.173 7 C -0.568 4.568 8 H 0.057 0.943 9 C -0.051 4.051 10 C -0.138 4.138 11 C 0.003 3.997 12 N -0.370 5.370 13 C 0.296 3.704 14 O -0.465 6.465 15 C -0.133 4.133 16 C -0.072 4.072 17 C -0.129 4.129 18 C -0.117 4.117 19 C -0.151 4.151 20 C -0.151 4.151 21 C -0.111 4.111 22 C 0.014 3.986 23 O -0.299 6.299 24 C 0.014 3.986 25 H 0.075 0.925 26 H 0.037 0.963 27 H 0.037 0.963 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.254 0.746 33 H 0.153 0.847 34 H 0.150 0.850 35 H 0.160 0.840 36 H 0.164 0.836 37 H 0.152 0.848 38 H 0.129 0.871 39 H 0.100 0.900 40 H 0.103 0.897 41 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 26.062 -15.669 0.044 30.410 hybrid contribution -0.844 0.885 -0.092 1.227 sum 25.218 -14.784 -0.049 29.232 Atomic orbital electron populations 1.70056 1.08170 1.28105 1.52688 1.25984 0.95604 1.03418 0.94299 0.85705 0.79481 0.78607 0.79154 1.19274 1.21043 1.17255 1.21464 0.91885 0.93261 1.50161 0.94293 1.19476 0.94096 0.94886 0.96678 1.21472 0.92069 0.97952 1.02263 1.21250 0.94300 0.83113 1.01041 1.46005 1.07195 1.09147 1.74646 1.21170 0.81876 0.92250 0.75069 1.90711 1.56397 1.48148 1.51242 1.20730 0.91614 0.92598 1.08313 1.19509 0.94897 0.99491 0.93264 1.21291 0.94220 0.99087 0.98333 1.20591 0.93971 0.99730 0.97419 1.21322 0.97055 1.02146 0.94556 1.21269 0.94970 1.02247 0.96595 1.20441 0.92272 0.99718 0.98636 1.21846 0.80966 1.01694 0.94093 1.89041 1.36941 1.81057 1.22874 1.21876 0.91614 1.01860 0.83255 0.92521 0.96273 0.96340 0.91561 0.91629 0.92854 0.92723 0.74615 0.84747 0.85030 0.83997 0.83577 0.84761 0.87060 0.89996 0.89738 0.86821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.96 13.96 21.45 0.30 -58.66 16 2 C 0.00 0.22 5.47 84.66 0.46 0.69 16 3 Si 0.95 44.21 27.47 68.60 1.88 46.09 16 4 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 5 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 6 H -0.25 -10.89 6.54 99.48 0.65 -10.24 16 7 C -0.53 -29.75 9.66 25.60 0.25 -29.51 16 8 H 0.04 2.37 7.99 -2.91 -0.02 2.35 16 9 C -0.01 -0.60 4.04 29.85 0.12 -0.48 16 10 C -0.10 -3.47 5.27 30.59 0.16 -3.30 16 11 C 0.13 3.86 5.67 86.38 0.49 4.35 16 12 N -0.72 -16.42 5.56 -463.07 -2.57 -18.99 16 13 C 0.51 12.22 7.82 87.65 0.69 12.90 16 14 O -0.58 -19.92 16.03 -3.00 -0.05 -19.97 16 15 C -0.09 -1.36 5.83 29.10 0.17 -1.19 16 16 C -0.07 -1.35 4.38 -19.84 -0.09 -1.44 16 17 C -0.11 -2.03 9.70 22.29 0.22 -1.81 16 18 C -0.10 -1.74 10.03 22.19 0.22 -1.51 16 19 C -0.15 -2.87 6.33 -19.71 -0.12 -3.00 16 20 C -0.15 -3.02 6.33 -19.68 -0.12 -3.14 16 21 C -0.09 -1.82 9.70 22.22 0.22 -1.61 16 22 C 0.09 1.54 7.63 71.36 0.54 2.08 16 23 O -0.38 -7.44 11.72 -148.98 -1.75 -9.18 16 24 C 0.09 1.43 7.63 71.36 0.54 1.97 16 25 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 26 H 0.02 0.86 7.20 -2.39 -0.02 0.84 16 27 H 0.02 0.81 7.57 -2.39 -0.02 0.80 16 28 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 29 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 30 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 31 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 32 H 0.42 6.77 8.47 -92.71 -0.79 5.99 16 33 H 0.13 1.18 8.08 -2.39 -0.02 1.16 16 34 H 0.13 1.22 8.09 -2.39 -0.02 1.20 16 35 H 0.14 2.03 8.06 -2.91 -0.02 2.00 16 36 H 0.15 1.78 8.06 -2.91 -0.02 1.75 16 37 H 0.13 2.20 8.06 -2.91 -0.02 2.17 16 38 H 0.11 1.50 8.14 -2.38 -0.02 1.48 16 39 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 40 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 41 H 0.11 1.33 8.14 -2.38 -0.02 1.31 16 Total: -1.00 -75.37 346.00 1.75 -73.62 By element: Atomic # 1 Polarization: 11.90 SS G_CDS: 0.19 Total: 12.09 kcal Atomic # 6 Polarization: -28.74 SS G_CDS: 3.74 Total: -25.00 kcal Atomic # 7 Polarization: -75.37 SS G_CDS: -2.27 Total: -77.65 kcal Atomic # 8 Polarization: -27.36 SS G_CDS: -1.79 Total: -29.15 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 1.88 Total: 46.09 kcal Total: -75.37 1.75 -73.62 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000542554136.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.460 kcal (2) G-P(sol) polarization free energy of solvation -75.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds