Wall clock time and date at job start Tue Mar 31 2020 05:56:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.47157 * 2 1 4 4 N 1.46499 * 109.47080 * 120.00348 * 2 1 3 5 5 C 1.46498 * 120.00104 * 121.82118 * 4 2 1 6 6 C 1.50701 * 109.46744 * 269.99822 * 5 4 2 7 7 H 1.07995 * 120.00358 * 0.02562 * 6 5 4 8 8 C 1.37884 * 119.99783 * 180.02562 * 6 5 4 9 9 N 1.31523 * 119.99856 * 359.97438 * 8 6 5 10 10 Si 1.86799 * 120.00023 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.47179 * 59.99895 * 10 8 6 12 12 H 1.48501 * 109.46844 * 179.97438 * 10 8 6 13 13 H 1.48498 * 109.47204 * 300.00104 * 10 8 6 14 14 C 1.34777 * 120.00102 * 301.81703 * 4 2 1 15 15 O 1.21561 * 120.00360 * 212.06882 * 14 4 2 16 16 C 1.47721 * 119.99820 * 32.06807 * 14 4 2 17 17 C 1.40120 * 120.35449 * 317.65152 * 16 14 4 18 18 N 1.31255 * 121.15544 * 180.29734 * 17 16 14 19 19 C 1.32721 * 121.79571 * 359.43573 * 18 17 16 20 20 N 1.37114 * 133.40644 * 180.22492 * 19 18 17 21 21 H 0.97010 * 126.59063 * 0.30475 * 20 19 18 22 22 N 1.40192 * 106.82409 * 180.30050 * 20 19 18 23 23 N 1.28667 * 109.50671 * 0.02562 * 22 20 19 24 24 C 1.35337 * 109.99915 * 359.97438 * 23 22 20 25 25 C 1.39430 * 120.35320 * 137.67265 * 16 14 4 26 26 H 1.09000 * 109.46901 * 253.60054 * 1 2 3 27 27 H 1.09001 * 109.47148 * 13.59849 * 1 2 3 28 28 H 1.08998 * 109.47288 * 133.59786 * 1 2 3 29 29 H 1.08998 * 109.46742 * 240.00455 * 2 1 3 30 30 H 1.08994 * 109.47201 * 223.63386 * 3 2 1 31 31 H 1.08999 * 109.47003 * 343.63551 * 3 2 1 32 32 H 1.08998 * 109.46658 * 103.63167 * 3 2 1 33 33 H 1.09002 * 109.47179 * 29.99807 * 5 4 2 34 34 H 1.08997 * 109.46910 * 149.99742 * 5 4 2 35 35 H 0.96995 * 119.99342 * 180.02562 * 9 8 6 36 36 H 1.07998 * 119.42165 * 0.02562 * 17 16 14 37 37 H 1.08003 * 120.95019 * 359.95715 * 25 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.8932 -1.8581 1.0620 6 6 2.0549 -3.1083 0.9900 7 1 0.9782 -3.0401 1.0387 8 6 2.6626 -4.3394 0.8618 9 7 3.9738 -4.4224 0.8019 10 14 1.6236 -5.8892 0.7732 11 1 0.7184 -5.8119 -0.4015 12 1 2.5104 -7.0725 0.6372 13 1 0.8158 -6.0152 2.0129 14 6 1.6628 -0.2521 2.4199 15 8 2.4295 -0.3732 3.3555 16 6 0.3415 0.3759 2.6244 17 6 -0.1605 1.2899 1.6885 18 7 -1.3300 1.8615 1.8574 19 6 -2.0932 1.5948 2.9099 20 7 -3.3259 2.0370 3.3162 21 1 -3.8933 2.6735 2.8535 22 7 -3.6088 1.3926 4.5287 23 7 -2.6302 0.6183 4.8422 24 6 -1.6635 0.6884 3.8977 25 6 -0.4193 0.0657 3.7509 26 1 -0.3633 -0.2901 0.9859 27 1 -0.3633 0.9989 -0.2416 28 1 -0.3634 -0.7086 -0.7442 29 1 1.8933 -0.5138 -0.8900 30 1 2.8624 1.5371 -0.7091 31 1 1.2315 2.1137 -0.2895 32 1 2.3895 1.7042 0.9987 33 1 3.4861 -1.7652 0.1521 34 1 3.5575 -1.9152 1.9243 35 1 4.4012 -5.2884 0.7114 36 1 0.4270 1.5317 0.8152 37 1 -0.0585 -0.6354 4.4890 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000544522986.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:20 Heat of formation + Delta-G solvation = 172.931165 kcal Electronic energy + Delta-G solvation = -23341.090784 eV Core-core repulsion = 19931.497568 eV Total energy + Delta-G solvation = -3409.593216 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.128 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.55252 -40.77172 -38.04068 -36.53156 -34.04907 -33.42961 -31.94148 -31.54147 -30.36935 -27.42165 -27.15589 -25.14218 -24.28787 -22.78210 -22.49381 -22.01575 -19.61041 -18.76252 -17.41503 -17.15114 -16.55063 -16.16042 -16.00868 -15.31741 -15.14674 -14.49101 -14.26616 -14.11181 -13.62480 -13.49582 -12.67377 -12.51040 -12.39822 -12.34034 -12.14561 -12.00001 -11.74168 -11.56228 -11.32620 -11.17322 -10.96849 -10.70362 -10.50671 -10.22897 -9.91789 -9.75595 -9.33927 -9.17770 -8.66859 -8.52883 -7.77315 -6.14457 -4.21440 0.22212 0.74691 1.93532 2.02657 2.89837 3.25297 3.30795 3.32342 3.41961 3.65581 3.85976 4.18944 4.28355 4.35990 4.56055 4.60791 4.79416 4.91985 5.04401 5.19901 5.26962 5.35495 5.51906 5.58773 5.66298 5.71854 5.83056 6.02725 6.11975 6.14842 6.30454 6.56667 6.94923 7.29944 7.41532 7.43613 7.71321 7.81994 8.10035 8.19403 8.59300 8.85869 9.44937 10.92786 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.018076 B = 0.005242 C = 0.004652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1548.678415 B = 5340.470696 C = 6017.779682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.133 3.867 3 C -0.189 4.189 4 N -0.605 5.605 5 C 0.249 3.751 6 C -0.538 4.538 7 H 0.058 0.942 8 C 0.065 3.935 9 N -0.890 5.890 10 Si 0.896 3.104 11 H -0.276 1.276 12 H -0.285 1.285 13 H -0.276 1.276 14 C 0.580 3.420 15 O -0.519 6.519 16 C -0.213 4.213 17 C 0.206 3.794 18 N -0.520 5.520 19 C 0.295 3.705 20 N -0.487 5.487 21 H 0.450 0.550 22 N -0.003 5.003 23 N -0.190 5.190 24 C -0.086 4.086 25 C 0.066 3.934 26 H 0.086 0.914 27 H 0.080 0.920 28 H 0.072 0.928 29 H 0.106 0.894 30 H 0.076 0.924 31 H 0.073 0.927 32 H 0.068 0.932 33 H 0.036 0.964 34 H 0.048 0.952 35 H 0.265 0.735 36 H 0.222 0.778 37 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.576 13.558 -2.382 16.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.267 4.267 2 C 0.027 3.973 3 C -0.247 4.247 4 N -0.338 5.338 5 C 0.130 3.870 6 C -0.577 4.577 7 H 0.076 0.924 8 C -0.138 4.138 9 N -0.528 5.528 10 Si 0.724 3.276 11 H -0.202 1.202 12 H -0.211 1.211 13 H -0.201 1.201 14 C 0.366 3.634 15 O -0.394 6.394 16 C -0.222 4.222 17 C 0.036 3.964 18 N -0.237 5.237 19 C 0.051 3.949 20 N -0.212 5.212 21 H 0.298 0.702 22 N 0.015 4.985 23 N -0.071 5.071 24 C -0.212 4.212 25 C 0.036 3.964 26 H 0.104 0.896 27 H 0.099 0.901 28 H 0.091 0.909 29 H 0.124 0.876 30 H 0.095 0.905 31 H 0.091 0.909 32 H 0.086 0.914 33 H 0.054 0.946 34 H 0.066 0.934 35 H 0.075 0.925 36 H 0.237 0.763 37 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -10.362 13.718 -1.249 17.238 hybrid contribution -0.211 -1.139 -0.642 1.325 sum -10.573 12.579 -1.890 16.541 Atomic orbital electron populations 1.23760 0.96718 1.02597 1.03594 1.21088 0.92901 0.92615 0.90663 1.22798 1.02161 0.95902 1.03797 1.48043 1.51137 1.31722 1.02854 1.19400 0.88990 0.79756 0.98811 1.21459 0.93498 0.91099 1.51662 0.92353 1.24922 0.94969 0.99016 0.94874 1.69920 1.08263 1.25404 1.49260 0.86586 0.80069 0.82258 0.78708 1.20199 1.21066 1.20140 1.17520 0.84483 0.77650 0.83775 1.90751 1.51571 1.54583 1.42530 1.21261 0.99465 1.03946 0.97568 1.25184 0.90160 0.85625 0.95460 1.66881 1.06666 1.29180 1.20960 1.19639 0.88283 0.93825 0.93139 1.47446 1.14513 1.38935 1.20334 0.70243 1.81676 1.16988 1.05129 0.94723 1.74801 0.98246 1.12612 1.21451 1.20261 0.98804 1.05927 0.96227 1.20933 0.87944 0.93077 0.94414 0.89608 0.90148 0.90923 0.87586 0.90545 0.90858 0.91353 0.94581 0.93441 0.92484 0.76310 0.82336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.65 7.73 37.16 0.29 -2.36 16 2 C 0.13 1.87 3.27 -67.93 -0.22 1.64 16 3 C -0.19 -2.02 8.36 37.16 0.31 -1.71 16 4 N -0.60 -11.57 2.38 -168.62 -0.40 -11.97 16 5 C 0.25 5.98 5.32 -5.19 -0.03 5.95 16 6 C -0.54 -14.14 9.39 -34.44 -0.32 -14.46 16 7 H 0.06 1.52 7.81 -52.49 -0.41 1.11 16 8 C 0.07 1.76 5.46 -17.81 -0.10 1.66 16 9 N -0.89 -25.14 13.29 55.43 0.74 -24.41 16 10 Si 0.90 20.87 29.54 -169.99 -5.02 15.85 16 11 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 12 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 13 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 14 C 0.58 11.27 5.88 -12.39 -0.07 11.19 16 15 O -0.52 -11.94 16.79 5.31 0.09 -11.85 16 16 C -0.21 -3.41 4.25 -104.87 -0.45 -3.85 16 17 C 0.21 2.72 5.87 -17.09 -0.10 2.62 16 18 N -0.52 -6.78 10.33 -16.65 -0.17 -6.96 16 19 C 0.30 4.04 8.49 -155.93 -1.32 2.72 16 20 N -0.49 -5.50 7.52 31.15 0.23 -5.26 16 21 H 0.45 3.29 8.96 -182.52 -1.64 1.66 16 22 N 0.00 -0.04 13.82 60.35 0.83 0.80 16 23 N -0.19 -2.93 12.40 32.17 0.40 -2.53 16 24 C -0.09 -1.32 7.27 -84.74 -0.62 -1.93 16 25 C 0.07 1.04 9.85 -38.51 -0.38 0.66 16 26 H 0.09 1.28 3.96 -62.16 -0.25 1.04 16 27 H 0.08 0.80 5.39 -51.93 -0.28 0.52 16 28 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.11 1.50 7.81 -51.93 -0.41 1.10 16 30 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.07 0.57 6.18 -51.93 -0.32 0.25 16 32 H 0.07 0.82 6.83 -51.93 -0.35 0.47 16 33 H 0.04 0.87 7.94 -51.93 -0.41 0.46 16 34 H 0.05 1.30 7.36 -51.93 -0.38 0.92 16 35 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 36 H 0.22 2.46 1.05 -53.97 -0.06 2.40 16 37 H 0.16 2.47 8.06 -52.48 -0.42 2.05 16 LS Contribution 304.48 15.07 4.59 4.59 Total: -1.00 -31.55 304.48 -6.63 -38.18 By element: Atomic # 1 Polarization: 6.34 SS G_CDS: -4.91 Total: 1.43 kcal Atomic # 6 Polarization: 5.15 SS G_CDS: -3.01 Total: 2.13 kcal Atomic # 7 Polarization: -51.96 SS G_CDS: 1.63 Total: -50.33 kcal Atomic # 8 Polarization: -11.94 SS G_CDS: 0.09 Total: -11.85 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -31.55 -6.63 -38.18 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000544522986.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 211.110 kcal (2) G-P(sol) polarization free energy of solvation -31.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 179.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.179 kcal (6) G-S(sol) free energy of system = (1) + (5) 172.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds