Wall clock time and date at job start Tue Mar 31 2020 05:56:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.47157 * 2 1 4 4 N 1.46499 * 109.47080 * 120.00348 * 2 1 3 5 5 C 1.46498 * 120.00104 * 121.82118 * 4 2 1 6 6 C 1.50701 * 109.46744 * 269.99822 * 5 4 2 7 7 H 1.07995 * 120.00358 * 0.02562 * 6 5 4 8 8 C 1.37884 * 119.99783 * 180.02562 * 6 5 4 9 9 N 1.31523 * 119.99856 * 359.97438 * 8 6 5 10 10 Si 1.86799 * 120.00023 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.47179 * 59.99895 * 10 8 6 12 12 H 1.48501 * 109.46844 * 179.97438 * 10 8 6 13 13 H 1.48498 * 109.47204 * 300.00104 * 10 8 6 14 14 C 1.34777 * 120.00102 * 301.81703 * 4 2 1 15 15 O 1.21561 * 120.00360 * 212.06882 * 14 4 2 16 16 C 1.47721 * 119.99820 * 32.06807 * 14 4 2 17 17 C 1.40120 * 120.35449 * 317.65152 * 16 14 4 18 18 N 1.31255 * 121.15544 * 180.29734 * 17 16 14 19 19 C 1.32721 * 121.79571 * 359.43573 * 18 17 16 20 20 N 1.37114 * 133.40644 * 180.22492 * 19 18 17 21 21 H 0.97010 * 126.59063 * 0.30475 * 20 19 18 22 22 N 1.40192 * 106.82409 * 180.30050 * 20 19 18 23 23 N 1.28667 * 109.50671 * 0.02562 * 22 20 19 24 24 C 1.35337 * 109.99915 * 359.97438 * 23 22 20 25 25 C 1.39430 * 120.35320 * 137.67265 * 16 14 4 26 26 H 1.09000 * 109.46901 * 253.60054 * 1 2 3 27 27 H 1.09001 * 109.47148 * 13.59849 * 1 2 3 28 28 H 1.08998 * 109.47288 * 133.59786 * 1 2 3 29 29 H 1.08998 * 109.46742 * 240.00455 * 2 1 3 30 30 H 1.08994 * 109.47201 * 223.63386 * 3 2 1 31 31 H 1.08999 * 109.47003 * 343.63551 * 3 2 1 32 32 H 1.08998 * 109.46658 * 103.63167 * 3 2 1 33 33 H 1.09002 * 109.47179 * 29.99807 * 5 4 2 34 34 H 1.08997 * 109.46910 * 149.99742 * 5 4 2 35 35 H 0.96995 * 119.99342 * 180.02562 * 9 8 6 36 36 H 1.07998 * 119.42165 * 0.02562 * 17 16 14 37 37 H 1.08003 * 120.95019 * 359.95715 * 25 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.8932 -1.8581 1.0620 6 6 2.0549 -3.1083 0.9900 7 1 0.9782 -3.0401 1.0387 8 6 2.6626 -4.3394 0.8618 9 7 3.9738 -4.4224 0.8019 10 14 1.6236 -5.8892 0.7732 11 1 0.7184 -5.8119 -0.4015 12 1 2.5104 -7.0725 0.6372 13 1 0.8158 -6.0152 2.0129 14 6 1.6628 -0.2521 2.4199 15 8 2.4295 -0.3732 3.3555 16 6 0.3415 0.3759 2.6244 17 6 -0.1605 1.2899 1.6885 18 7 -1.3300 1.8615 1.8574 19 6 -2.0932 1.5948 2.9099 20 7 -3.3259 2.0370 3.3162 21 1 -3.8933 2.6735 2.8535 22 7 -3.6088 1.3926 4.5287 23 7 -2.6302 0.6183 4.8422 24 6 -1.6635 0.6884 3.8977 25 6 -0.4193 0.0657 3.7509 26 1 -0.3633 -0.2901 0.9859 27 1 -0.3633 0.9989 -0.2416 28 1 -0.3634 -0.7086 -0.7442 29 1 1.8933 -0.5138 -0.8900 30 1 2.8624 1.5371 -0.7091 31 1 1.2315 2.1137 -0.2895 32 1 2.3895 1.7042 0.9987 33 1 3.4861 -1.7652 0.1521 34 1 3.5575 -1.9152 1.9243 35 1 4.4012 -5.2884 0.7114 36 1 0.4270 1.5317 0.8152 37 1 -0.0585 -0.6354 4.4890 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000544522986.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:19 Heat of formation + Delta-G solvation = 150.323196 kcal Electronic energy + Delta-G solvation = -23342.071139 eV Core-core repulsion = 19931.497568 eV Total energy + Delta-G solvation = -3410.573572 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.128 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.67959 -42.03640 -39.40294 -37.89223 -35.37869 -35.07777 -33.47275 -32.81447 -31.53394 -29.19430 -28.20589 -26.41712 -25.64049 -24.26712 -23.79736 -23.26947 -20.91684 -19.86110 -18.67008 -18.62922 -18.30432 -17.35845 -17.27818 -16.93266 -16.43354 -16.04867 -15.78774 -15.33249 -14.85551 -14.72838 -14.21039 -13.84540 -13.69138 -13.62380 -13.48705 -13.19307 -13.08260 -12.96978 -12.76513 -12.64794 -12.42312 -12.21365 -12.06947 -11.69173 -11.59650 -11.27449 -10.64194 -10.62176 -10.35441 -9.82984 -9.39161 -8.20625 -6.35947 -0.90317 -0.44699 0.90319 0.93543 1.38499 1.40881 1.45095 1.50722 2.07250 2.38360 2.40057 2.73806 3.06371 3.09358 3.14407 3.37312 3.45809 3.70037 3.81639 4.02783 4.17000 4.27177 4.46796 4.52371 4.61800 4.65449 4.81345 4.92841 5.02412 5.08564 5.16230 5.25676 5.37717 5.59596 5.71015 5.87813 6.06780 6.31735 6.61861 6.64142 6.73770 7.08845 7.36237 8.85401 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.018076 B = 0.005242 C = 0.004652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1548.678415 B = 5340.470696 C = 6017.779682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.121 3.879 3 C -0.186 4.186 4 N -0.607 5.607 5 C 0.263 3.737 6 C -0.547 4.547 7 H 0.058 0.942 8 C 0.015 3.985 9 N -0.924 5.924 10 Si 0.959 3.041 11 H -0.262 1.262 12 H -0.281 1.281 13 H -0.278 1.278 14 C 0.578 3.422 15 O -0.569 6.569 16 C -0.218 4.218 17 C 0.221 3.779 18 N -0.504 5.504 19 C 0.296 3.704 20 N -0.461 5.461 21 H 0.470 0.530 22 N 0.003 4.997 23 N -0.214 5.214 24 C -0.100 4.100 25 C 0.057 3.943 26 H 0.066 0.934 27 H 0.117 0.883 28 H 0.076 0.924 29 H 0.104 0.896 30 H 0.090 0.910 31 H 0.115 0.885 32 H 0.053 0.947 33 H 0.031 0.969 34 H 0.003 0.997 35 H 0.267 0.733 36 H 0.244 0.756 37 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.968 15.058 -4.134 19.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.263 4.263 2 C 0.018 3.982 3 C -0.243 4.243 4 N -0.339 5.339 5 C 0.143 3.857 6 C -0.585 4.585 7 H 0.076 0.924 8 C -0.185 4.185 9 N -0.563 5.563 10 Si 0.784 3.216 11 H -0.186 1.186 12 H -0.206 1.206 13 H -0.204 1.204 14 C 0.366 3.634 15 O -0.448 6.448 16 C -0.227 4.227 17 C 0.051 3.949 18 N -0.220 5.220 19 C 0.051 3.949 20 N -0.189 5.189 21 H 0.322 0.678 22 N 0.020 4.980 23 N -0.094 5.094 24 C -0.226 4.226 25 C 0.028 3.972 26 H 0.084 0.916 27 H 0.135 0.865 28 H 0.095 0.905 29 H 0.122 0.878 30 H 0.109 0.891 31 H 0.133 0.867 32 H 0.072 0.928 33 H 0.049 0.951 34 H 0.021 0.979 35 H 0.076 0.924 36 H 0.259 0.741 37 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -12.816 15.269 -3.039 20.165 hybrid contribution 0.509 -1.555 -0.095 1.639 sum -12.307 13.714 -3.135 18.691 Atomic orbital electron populations 1.23726 0.95148 1.04874 1.02510 1.21476 0.94217 0.94180 0.88303 1.22781 1.04111 0.93868 1.03566 1.47985 1.50561 1.30670 1.04711 1.18875 0.88984 0.81444 0.96405 1.21736 0.93615 0.92080 1.51085 0.92374 1.25749 0.96025 1.02170 0.94549 1.70037 1.09846 1.26172 1.50282 0.85592 0.78602 0.78510 0.78886 1.18626 1.20631 1.20397 1.17989 0.85310 0.77022 0.83070 1.90716 1.53235 1.56884 1.43964 1.20918 0.97742 1.05221 0.98835 1.25450 0.90194 0.84265 0.95022 1.67029 1.06203 1.28506 1.20291 1.19756 0.88855 0.93391 0.92858 1.47406 1.13795 1.38291 1.19418 0.67850 1.81618 1.16424 1.04662 0.95279 1.74817 0.98746 1.13731 1.22153 1.20274 0.98668 1.06660 0.97025 1.20898 0.88634 0.93328 0.94348 0.91640 0.86468 0.90512 0.87754 0.89134 0.86738 0.92771 0.95123 0.97891 0.92386 0.74111 0.83359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -4.61 7.73 71.98 0.56 -4.05 16 2 C 0.12 3.23 3.27 44.99 0.15 3.37 16 3 C -0.19 -3.44 8.36 71.98 0.60 -2.84 16 4 N -0.61 -23.63 2.38 -805.67 -1.92 -25.55 16 5 C 0.26 13.21 5.32 85.63 0.46 13.66 16 6 C -0.55 -29.30 9.39 25.60 0.24 -29.06 16 7 H 0.06 3.05 7.81 -2.91 -0.02 3.03 16 8 C 0.01 0.81 5.46 84.66 0.46 1.28 16 9 N -0.92 -53.44 13.29 21.45 0.28 -53.16 16 10 Si 0.96 42.93 29.54 68.60 2.03 44.96 16 11 H -0.26 -11.03 7.11 99.48 0.71 -10.32 16 12 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 13 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 14 C 0.58 23.13 5.88 86.75 0.51 23.64 16 15 O -0.57 -27.74 16.79 -3.91 -0.07 -27.81 16 16 C -0.22 -6.90 4.25 -20.03 -0.09 -6.98 16 17 C 0.22 5.26 5.87 85.24 0.50 5.76 16 18 N -0.50 -11.39 10.33 -206.59 -2.13 -13.53 16 19 C 0.30 7.33 8.49 134.01 1.14 8.47 16 20 N -0.46 -9.00 7.52 -55.37 -0.42 -9.41 16 21 H 0.47 5.09 8.96 -213.25 -1.91 3.18 16 22 N 0.00 0.07 13.82 37.02 0.51 0.58 16 23 N -0.21 -6.38 12.40 -52.14 -0.65 -7.03 16 24 C -0.10 -2.96 7.27 39.63 0.29 -2.67 16 25 C 0.06 1.84 9.85 22.96 0.23 2.07 16 26 H 0.07 1.82 3.96 -12.00 -0.05 1.78 16 27 H 0.12 1.76 5.39 -2.39 -0.01 1.74 16 28 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 29 H 0.10 2.81 7.81 -2.39 -0.02 2.79 16 30 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.11 1.19 6.18 -2.39 -0.01 1.18 16 32 H 0.05 1.21 6.83 -2.39 -0.02 1.19 16 33 H 0.03 1.55 7.94 -2.39 -0.02 1.53 16 34 H 0.00 0.17 7.36 -2.39 -0.02 0.16 16 35 H 0.27 14.62 8.31 -92.71 -0.77 13.85 16 36 H 0.24 4.52 1.05 -4.31 0.00 4.51 16 37 H 0.15 4.92 8.06 -2.91 -0.02 4.90 16 Total: -1.00 -70.95 304.48 1.89 -69.06 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: -0.80 Total: 9.24 kcal Atomic # 6 Polarization: 7.60 SS G_CDS: 5.04 Total: 12.64 kcal Atomic # 7 Polarization: -103.78 SS G_CDS: -4.32 Total: -108.10 kcal Atomic # 8 Polarization: -27.74 SS G_CDS: -0.07 Total: -27.81 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 2.03 Total: 44.96 kcal Total: -70.95 1.89 -69.06 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000544522986.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 219.384 kcal (2) G-P(sol) polarization free energy of solvation -70.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 148.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.061 kcal (6) G-S(sol) free energy of system = (1) + (5) 150.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds