Wall clock time and date at job start Tue Mar 31 2020 06:42:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36882 * 126.39884 * 2 1 4 4 C 1.34668 * 106.81624 * 180.24894 * 3 2 1 5 5 N 1.34140 * 108.02021 * 359.73995 * 4 3 2 6 6 C 1.30496 * 109.25465 * 0.02562 * 5 4 3 7 7 C 1.50704 * 125.64973 * 179.97438 * 6 5 4 8 8 H 1.08993 * 109.47098 * 165.02354 * 7 6 5 9 9 N 1.46901 * 109.46872 * 45.02272 * 7 6 5 10 10 C 1.46895 * 110.99816 * 85.00162 * 9 7 6 11 11 C 1.50706 * 109.47182 * 179.97438 * 10 9 7 12 12 H 1.08000 * 119.99302 * 0.02562 * 11 10 9 13 13 C 1.37871 * 120.00436 * 179.72677 * 11 10 9 14 14 N 1.31514 * 120.00481 * 180.02562 * 13 11 10 15 15 Si 1.86801 * 119.99745 * 359.97438 * 13 11 10 16 16 H 1.48504 * 109.47209 * 90.00365 * 15 13 11 17 17 H 1.48506 * 109.47294 * 210.00213 * 15 13 11 18 18 H 1.48501 * 109.47275 * 330.00116 * 15 13 11 19 19 C 1.50697 * 109.46918 * 285.02260 * 7 6 5 20 20 C 1.38264 * 119.98979 * 260.00045 * 19 7 6 21 21 C 1.38220 * 120.05420 * 180.02562 * 20 19 7 22 22 C 1.38227 * 120.02606 * 359.97438 * 21 20 19 23 23 C 1.38435 * 119.97208 * 0.02562 * 22 21 20 24 24 F 1.35094 * 120.02652 * 180.02562 * 23 22 21 25 25 C 1.38175 * 119.98787 * 79.72723 * 19 7 6 26 26 H 1.08999 * 109.47770 * 270.19671 * 1 2 3 27 27 H 1.09003 * 109.46649 * 30.19294 * 1 2 3 28 28 H 1.09000 * 109.47422 * 150.18942 * 1 2 3 29 29 H 1.07993 * 126.59453 * 359.97024 * 3 2 1 30 30 H 1.07999 * 125.98965 * 179.76356 * 4 3 2 31 31 H 1.00899 * 111.00258 * 321.04393 * 9 7 6 32 32 H 1.09001 * 109.47613 * 60.00104 * 10 9 7 33 33 H 1.08998 * 109.47678 * 300.00000 * 10 9 7 34 34 H 0.96995 * 120.00207 * 179.97438 * 14 13 11 35 35 H 1.08004 * 119.97245 * 359.97438 * 20 19 7 36 36 H 1.08001 * 119.99241 * 180.02562 * 21 20 19 37 37 H 1.07997 * 120.01627 * 180.02562 * 22 21 20 38 38 H 1.08007 * 120.01417 * 359.97438 * 25 19 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2773 1.1018 0.0000 4 6 3.5461 0.6504 -0.0056 5 7 3.5095 -0.6905 -0.0031 6 6 2.2663 -1.0871 0.0032 7 6 1.8017 -2.5207 0.0072 8 1 0.7466 -2.5599 0.2778 9 7 2.5866 -3.2870 0.9843 10 6 2.0147 -3.1639 2.3317 11 6 2.8443 -3.9619 3.3044 12 1 3.7100 -4.5058 2.9564 13 6 2.5017 -3.9928 4.6395 14 7 3.2259 -4.6888 5.4885 15 14 1.0095 -3.0447 5.2430 16 1 -0.1921 -3.9143 5.1702 17 1 1.2284 -2.6196 6.6489 18 1 0.8059 -1.8466 4.3896 19 6 1.9907 -3.1138 -1.3651 20 6 0.9152 -3.2159 -2.2280 21 6 1.0869 -3.7602 -3.4869 22 6 2.3346 -4.2026 -3.8848 23 6 3.4121 -4.1009 -3.0218 24 9 4.6321 -4.5325 -3.4097 25 6 3.2399 -3.5502 -1.7628 26 1 -0.3634 0.0035 1.0276 27 1 -0.3633 0.8883 -0.5169 28 1 -0.3634 -0.8917 -0.5109 29 1 1.9614 2.1345 -0.0005 30 1 4.4369 1.2610 -0.0107 31 1 3.5543 -3.0014 0.9747 32 1 0.9931 -3.5439 2.3290 33 1 2.0117 -2.1158 2.6309 34 1 2.9851 -4.7101 6.4278 35 1 -0.0601 -2.8708 -1.9178 36 1 0.2462 -3.8391 -4.1603 37 1 2.4687 -4.6275 -4.8686 38 1 4.0810 -3.4660 -1.0904 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000557339306.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:31 Heat of formation + Delta-G solvation = 51.008100 kcal Electronic energy + Delta-G solvation = -22693.064146 eV Core-core repulsion = 19258.263987 eV Total energy + Delta-G solvation = -3434.800159 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.129 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -48.70602 -42.00279 -39.07881 -35.88961 -33.95337 -32.82628 -31.15670 -30.45288 -29.38787 -27.43195 -26.88748 -24.81649 -22.67056 -21.88507 -21.35852 -20.88464 -19.50239 -17.44715 -17.30235 -16.60333 -16.15940 -15.95855 -15.64546 -15.40554 -14.99586 -14.39295 -14.26152 -13.91537 -13.60285 -13.41798 -13.29120 -13.12554 -12.77464 -12.73342 -12.50055 -12.31463 -11.88636 -11.85601 -11.31180 -11.07714 -10.74001 -10.62638 -9.92652 -9.78287 -9.48520 -9.34496 -8.83714 -8.63778 -8.58680 -8.25999 -7.73661 -6.07274 -4.05280 1.22033 1.35211 2.15858 2.84709 3.23965 3.30951 3.31854 3.32924 3.67539 4.35123 4.38369 4.55716 4.61444 4.64158 4.79718 4.93797 4.99036 5.09181 5.13066 5.24023 5.24738 5.35345 5.46014 5.51372 5.58760 5.83018 5.91873 6.11646 6.26706 6.31932 6.36701 6.61809 6.64413 6.88471 6.95919 6.99949 7.24514 7.49521 7.75925 8.18591 8.29247 8.59572 9.01569 9.53432 11.06088 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.013013 B = 0.005716 C = 0.004741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2151.143808 B = 4897.560511 C = 5904.054489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.457 5.457 3 C -0.066 4.066 4 C -0.025 4.025 5 N -0.479 5.479 6 C 0.191 3.809 7 C 0.206 3.794 8 H 0.094 0.906 9 N -0.653 5.653 10 C 0.165 3.835 11 C -0.514 4.514 12 H 0.082 0.918 13 C 0.071 3.929 14 N -0.897 5.897 15 Si 0.876 3.124 16 H -0.275 1.275 17 H -0.285 1.285 18 H -0.271 1.271 19 C -0.029 4.029 20 C -0.129 4.129 21 C -0.096 4.096 22 C -0.160 4.160 23 C 0.094 3.906 24 F -0.142 7.142 25 C -0.108 4.108 26 H 0.077 0.923 27 H 0.085 0.915 28 H 0.086 0.914 29 H 0.171 0.829 30 H 0.168 0.832 31 H 0.356 0.644 32 H 0.022 0.978 33 H -0.015 1.015 34 H 0.264 0.736 35 H 0.123 0.877 36 H 0.129 0.871 37 H 0.130 0.870 38 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.060 9.590 -17.301 21.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.140 5.140 3 C -0.199 4.199 4 C -0.173 4.173 5 N -0.197 5.197 6 C -0.073 4.073 7 C 0.093 3.907 8 H 0.112 0.888 9 N -0.284 5.284 10 C 0.038 3.962 11 C -0.552 4.552 12 H 0.100 0.900 13 C -0.131 4.131 14 N -0.536 5.536 15 Si 0.703 3.297 16 H -0.201 1.201 17 H -0.211 1.211 18 H -0.196 1.196 19 C -0.030 4.030 20 C -0.147 4.147 21 C -0.115 4.115 22 C -0.179 4.179 23 C 0.075 3.925 24 F -0.120 7.120 25 C -0.127 4.127 26 H 0.096 0.904 27 H 0.104 0.896 28 H 0.105 0.895 29 H 0.188 0.812 30 H 0.185 0.815 31 H 0.177 0.823 32 H 0.040 0.960 33 H 0.003 0.997 34 H 0.074 0.926 35 H 0.140 0.860 36 H 0.147 0.853 37 H 0.148 0.852 38 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -7.775 8.406 -17.211 20.672 hybrid contribution -1.058 2.036 0.743 2.412 sum -8.833 10.443 -16.468 21.407 Atomic orbital electron populations 1.22054 0.77142 1.04413 1.03787 1.45332 1.07376 1.06682 1.54641 1.22628 0.91528 0.92350 1.13417 1.22261 0.96276 0.91217 1.07585 1.70106 1.18329 1.11904 1.19356 1.24431 0.86333 0.91582 1.04998 1.18946 0.99132 0.81352 0.91312 0.88837 1.60819 1.06848 1.53631 1.07120 1.20060 0.95951 0.94964 0.85255 1.20981 1.13257 1.29766 0.91175 0.90032 1.24869 0.96493 0.95137 0.96634 1.69889 1.39201 1.41124 1.03395 0.86854 0.83810 0.80749 0.78253 1.20077 1.21127 1.19590 1.19451 0.92729 0.96614 0.94248 1.20983 0.98411 1.01275 0.94055 1.20826 0.96392 0.98134 0.96099 1.21067 0.92560 1.04093 1.00184 1.17714 0.80467 0.99961 0.94338 1.91486 1.41694 1.87603 1.91255 1.21027 0.99126 0.98140 0.94400 0.90417 0.89602 0.89522 0.81211 0.81483 0.82344 0.96001 0.99719 0.92603 0.85950 0.85317 0.85193 0.83941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.64 10.75 59.85 0.64 1.28 16 2 N -0.46 -6.31 3.15 -121.28 -0.38 -6.69 16 3 C -0.07 -0.87 11.58 -16.56 -0.19 -1.06 16 4 C -0.02 -0.38 11.87 -17.81 -0.21 -0.59 16 5 N -0.48 -8.71 10.67 -10.81 -0.12 -8.82 16 6 C 0.19 3.21 6.44 -155.41 -1.00 2.21 16 7 C 0.21 3.47 2.45 -70.02 -0.17 3.29 16 8 H 0.09 1.44 6.60 -51.93 -0.34 1.09 16 9 N -0.65 -13.70 5.69 -110.46 -0.63 -14.33 16 10 C 0.17 3.99 4.30 -4.98 -0.02 3.97 16 11 C -0.51 -14.79 9.87 -34.44 -0.34 -15.13 16 12 H 0.08 2.56 8.06 -52.49 -0.42 2.14 16 13 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 14 N -0.90 -27.71 13.96 55.43 0.77 -26.94 16 15 Si 0.88 21.48 27.47 -169.99 -4.67 16.81 16 16 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 17 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 18 H -0.27 -6.41 6.53 56.52 0.37 -6.04 16 19 C -0.03 -0.44 4.94 -104.64 -0.52 -0.95 16 20 C -0.13 -1.56 9.67 -39.58 -0.38 -1.94 16 21 C -0.10 -1.05 10.04 -39.59 -0.40 -1.44 16 22 C -0.16 -1.94 10.03 -39.51 -0.40 -2.33 16 23 C 0.09 1.40 7.30 -39.42 -0.29 1.11 16 24 F -0.14 -2.18 17.27 2.25 0.04 -2.15 16 25 C -0.11 -1.74 9.30 -39.51 -0.37 -2.11 16 26 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.09 0.68 7.33 -51.93 -0.38 0.30 16 29 H 0.17 1.55 8.06 -52.49 -0.42 1.13 16 30 H 0.17 2.09 8.06 -52.49 -0.42 1.66 16 31 H 0.36 7.81 7.37 -39.29 -0.29 7.52 16 32 H 0.02 0.52 7.50 -51.93 -0.39 0.13 16 33 H -0.01 -0.37 7.04 -51.93 -0.37 -0.74 16 34 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 35 H 0.12 1.16 8.04 -52.48 -0.42 0.73 16 36 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 37 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 38 H 0.14 2.49 7.26 -52.48 -0.38 2.11 16 LS Contribution 328.98 15.07 4.96 4.96 Total: -1.00 -33.97 328.98 -8.46 -42.43 By element: Atomic # 1 Polarization: 11.15 SS G_CDS: -4.70 Total: 6.45 kcal Atomic # 6 Polarization: -7.99 SS G_CDS: -3.74 Total: -11.73 kcal Atomic # 7 Polarization: -56.42 SS G_CDS: -0.35 Total: -56.77 kcal Atomic # 9 Polarization: -2.18 SS G_CDS: 0.04 Total: -2.15 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -4.67 Total: 16.81 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -33.97 -8.46 -42.43 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000557339306.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.441 kcal (2) G-P(sol) polarization free energy of solvation -33.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.433 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds