Wall clock time and date at job start Tue Mar 31 2020 06:42:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36882 * 126.39884 * 2 1 4 4 C 1.34668 * 106.81624 * 180.24894 * 3 2 1 5 5 N 1.34140 * 108.02021 * 359.73995 * 4 3 2 6 6 C 1.30496 * 109.25465 * 0.02562 * 5 4 3 7 7 C 1.50704 * 125.64973 * 179.97438 * 6 5 4 8 8 H 1.08993 * 109.47098 * 165.02354 * 7 6 5 9 9 N 1.46901 * 109.46872 * 45.02272 * 7 6 5 10 10 C 1.46895 * 110.99816 * 85.00162 * 9 7 6 11 11 C 1.50706 * 109.47182 * 179.97438 * 10 9 7 12 12 H 1.08000 * 119.99302 * 0.02562 * 11 10 9 13 13 C 1.37871 * 120.00436 * 179.72677 * 11 10 9 14 14 N 1.31514 * 120.00481 * 180.02562 * 13 11 10 15 15 Si 1.86801 * 119.99745 * 359.97438 * 13 11 10 16 16 H 1.48504 * 109.47209 * 90.00365 * 15 13 11 17 17 H 1.48506 * 109.47294 * 210.00213 * 15 13 11 18 18 H 1.48501 * 109.47275 * 330.00116 * 15 13 11 19 19 C 1.50697 * 109.46918 * 285.02260 * 7 6 5 20 20 C 1.38264 * 119.98979 * 260.00045 * 19 7 6 21 21 C 1.38220 * 120.05420 * 180.02562 * 20 19 7 22 22 C 1.38227 * 120.02606 * 359.97438 * 21 20 19 23 23 C 1.38435 * 119.97208 * 0.02562 * 22 21 20 24 24 F 1.35094 * 120.02652 * 180.02562 * 23 22 21 25 25 C 1.38175 * 119.98787 * 79.72723 * 19 7 6 26 26 H 1.08999 * 109.47770 * 270.19671 * 1 2 3 27 27 H 1.09003 * 109.46649 * 30.19294 * 1 2 3 28 28 H 1.09000 * 109.47422 * 150.18942 * 1 2 3 29 29 H 1.07993 * 126.59453 * 359.97024 * 3 2 1 30 30 H 1.07999 * 125.98965 * 179.76356 * 4 3 2 31 31 H 1.00899 * 111.00258 * 321.04393 * 9 7 6 32 32 H 1.09001 * 109.47613 * 60.00104 * 10 9 7 33 33 H 1.08998 * 109.47678 * 300.00000 * 10 9 7 34 34 H 0.96995 * 120.00207 * 179.97438 * 14 13 11 35 35 H 1.08004 * 119.97245 * 359.97438 * 20 19 7 36 36 H 1.08001 * 119.99241 * 180.02562 * 21 20 19 37 37 H 1.07997 * 120.01627 * 180.02562 * 22 21 20 38 38 H 1.08007 * 120.01417 * 359.97438 * 25 19 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2773 1.1018 0.0000 4 6 3.5461 0.6504 -0.0056 5 7 3.5095 -0.6905 -0.0031 6 6 2.2663 -1.0871 0.0032 7 6 1.8017 -2.5207 0.0072 8 1 0.7466 -2.5599 0.2778 9 7 2.5866 -3.2870 0.9843 10 6 2.0147 -3.1639 2.3317 11 6 2.8443 -3.9619 3.3044 12 1 3.7100 -4.5058 2.9564 13 6 2.5017 -3.9928 4.6395 14 7 3.2259 -4.6888 5.4885 15 14 1.0095 -3.0447 5.2430 16 1 -0.1921 -3.9143 5.1702 17 1 1.2284 -2.6196 6.6489 18 1 0.8059 -1.8466 4.3896 19 6 1.9907 -3.1138 -1.3651 20 6 0.9152 -3.2159 -2.2280 21 6 1.0869 -3.7602 -3.4869 22 6 2.3346 -4.2026 -3.8848 23 6 3.4121 -4.1009 -3.0218 24 9 4.6321 -4.5325 -3.4097 25 6 3.2399 -3.5502 -1.7628 26 1 -0.3634 0.0035 1.0276 27 1 -0.3633 0.8883 -0.5169 28 1 -0.3634 -0.8917 -0.5109 29 1 1.9614 2.1345 -0.0005 30 1 4.4369 1.2610 -0.0107 31 1 3.5543 -3.0014 0.9747 32 1 0.9931 -3.5439 2.3290 33 1 2.0117 -2.1158 2.6309 34 1 2.9851 -4.7101 6.4278 35 1 -0.0601 -2.8708 -1.9178 36 1 0.2462 -3.8391 -4.1603 37 1 2.4687 -4.6275 -4.8686 38 1 4.0810 -3.4660 -1.0904 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000557339306.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:30 Heat of formation + Delta-G solvation = 28.345202 kcal Electronic energy + Delta-G solvation = -22694.046883 eV Core-core repulsion = 19258.263987 eV Total energy + Delta-G solvation = -3435.782896 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.129 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.86207 -43.09077 -40.13919 -37.37627 -34.94687 -34.83580 -32.69651 -31.48533 -30.52663 -29.04206 -27.85002 -26.20273 -23.94024 -23.01382 -22.90241 -22.08136 -20.68482 -19.16437 -18.34375 -18.16215 -17.22468 -17.04674 -16.67415 -16.60302 -16.54691 -15.92013 -15.60068 -15.09825 -14.99563 -14.58725 -14.55286 -14.32513 -14.20545 -13.75656 -13.73601 -13.47183 -13.28439 -12.95758 -12.71441 -12.56244 -12.41673 -12.10333 -11.84358 -11.53075 -10.92484 -10.83995 -10.54844 -9.89309 -9.66577 -9.48623 -9.24488 -8.32171 -6.37667 0.19315 0.32591 1.09854 1.29756 1.34053 1.43604 1.91510 2.17809 2.31076 2.64008 3.01193 3.27378 3.30927 3.49867 3.79225 3.87564 3.95404 4.02666 4.16616 4.25385 4.33392 4.40662 4.51502 4.57556 4.65849 4.67269 4.76677 4.90115 5.00922 5.14926 5.22695 5.32114 5.36797 5.45483 5.53906 5.81618 5.89960 5.98942 6.23147 6.37831 6.52324 6.69388 7.17779 7.26180 8.85090 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.013013 B = 0.005716 C = 0.004741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2151.143808 B = 4897.560511 C = 5904.054489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 N -0.455 5.455 3 C -0.044 4.044 4 C -0.064 4.064 5 N -0.524 5.524 6 C 0.166 3.834 7 C 0.210 3.790 8 H 0.112 0.888 9 N -0.664 5.664 10 C 0.183 3.817 11 C -0.530 4.530 12 H 0.031 0.969 13 C 0.007 3.993 14 N -0.947 5.947 15 Si 0.955 3.045 16 H -0.255 1.255 17 H -0.282 1.282 18 H -0.254 1.254 19 C -0.046 4.046 20 C -0.121 4.121 21 C -0.083 4.083 22 C -0.153 4.153 23 C 0.069 3.931 24 F -0.154 7.154 25 C -0.135 4.135 26 H 0.079 0.921 27 H 0.120 0.880 28 H 0.101 0.899 29 H 0.214 0.786 30 H 0.180 0.820 31 H 0.343 0.657 32 H 0.037 0.963 33 H -0.022 1.022 34 H 0.268 0.732 35 H 0.158 0.842 36 H 0.175 0.825 37 H 0.157 0.843 38 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.544 11.627 -19.087 25.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 N -0.137 5.137 3 C -0.177 4.177 4 C -0.212 4.212 5 N -0.243 5.243 6 C -0.098 4.098 7 C 0.098 3.902 8 H 0.130 0.870 9 N -0.294 5.294 10 C 0.055 3.945 11 C -0.569 4.569 12 H 0.050 0.950 13 C -0.190 4.190 14 N -0.587 5.587 15 Si 0.778 3.222 16 H -0.180 1.180 17 H -0.208 1.208 18 H -0.178 1.178 19 C -0.048 4.048 20 C -0.139 4.139 21 C -0.100 4.100 22 C -0.172 4.172 23 C 0.050 3.950 24 F -0.133 7.133 25 C -0.154 4.154 26 H 0.098 0.902 27 H 0.138 0.862 28 H 0.120 0.880 29 H 0.231 0.769 30 H 0.197 0.803 31 H 0.162 0.838 32 H 0.055 0.945 33 H -0.005 1.005 34 H 0.077 0.923 35 H 0.176 0.824 36 H 0.192 0.808 37 H 0.175 0.825 38 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -12.285 10.439 -19.032 24.942 hybrid contribution 0.418 1.403 1.212 1.901 sum -11.867 11.842 -17.820 24.466 Atomic orbital electron populations 1.22469 0.74260 1.06997 1.04728 1.45590 1.09131 1.05776 1.53190 1.23259 0.90567 0.93831 1.10089 1.22710 0.98334 0.90585 1.09581 1.70010 1.20106 1.13817 1.20382 1.24163 0.86605 0.92183 1.06872 1.18943 0.98951 0.81436 0.90886 0.87005 1.60702 1.06591 1.55649 1.06433 1.19734 0.95555 0.93285 0.85905 1.21271 1.12646 1.30058 0.92879 0.95015 1.25922 1.00362 0.96150 0.96587 1.70064 1.41657 1.43043 1.03983 0.85607 0.79316 0.79689 0.77628 1.17978 1.20771 1.17764 1.19457 0.93315 0.97741 0.94255 1.21388 0.98678 1.00017 0.93853 1.21354 0.96944 0.95714 0.95998 1.21458 0.92067 1.03018 1.00626 1.17996 0.81072 1.01232 0.94707 1.91444 1.42683 1.87904 1.91292 1.20901 0.99074 1.00451 0.95001 0.90226 0.86156 0.88009 0.76909 0.80300 0.83800 0.94517 1.00483 0.92286 0.82396 0.80754 0.82498 0.87328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.79 10.75 127.77 1.37 2.17 16 2 N -0.45 -11.32 3.15 -537.61 -1.69 -13.02 16 3 C -0.04 -1.02 11.58 83.09 0.96 -0.06 16 4 C -0.06 -1.95 11.87 83.52 0.99 -0.96 16 5 N -0.52 -19.72 10.67 -188.12 -2.01 -21.73 16 6 C 0.17 5.51 6.44 138.13 0.89 6.40 16 7 C 0.21 6.99 2.45 43.42 0.11 7.10 16 8 H 0.11 3.17 6.60 -2.39 -0.02 3.16 16 9 N -0.66 -29.05 5.69 -503.39 -2.87 -31.92 16 10 C 0.18 8.97 4.30 85.56 0.37 9.34 16 11 C -0.53 -31.97 9.87 25.60 0.25 -31.72 16 12 H 0.03 2.15 8.06 -2.91 -0.02 2.13 16 13 C 0.01 0.43 5.47 84.65 0.46 0.90 16 14 N -0.95 -60.63 13.96 21.45 0.30 -60.33 16 15 Si 0.96 44.12 27.47 68.60 1.88 46.00 16 16 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 17 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 18 H -0.25 -10.93 6.53 99.48 0.65 -10.28 16 19 C -0.05 -1.38 4.94 -19.87 -0.10 -1.48 16 20 C -0.12 -2.51 9.67 22.27 0.22 -2.30 16 21 C -0.08 -1.43 10.04 22.26 0.22 -1.21 16 22 C -0.15 -3.33 10.03 22.31 0.22 -3.11 16 23 C 0.07 2.08 7.30 22.38 0.16 2.25 16 24 F -0.15 -5.02 17.27 44.97 0.78 -4.25 16 25 C -0.13 -4.61 9.30 22.31 0.21 -4.40 16 26 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 27 H 0.12 0.87 8.14 -2.39 -0.02 0.85 16 28 H 0.10 1.11 7.33 -2.39 -0.02 1.10 16 29 H 0.21 2.92 8.06 -2.91 -0.02 2.90 16 30 H 0.18 4.56 8.06 -2.91 -0.02 4.54 16 31 H 0.34 16.42 7.37 -89.69 -0.66 15.76 16 32 H 0.04 1.69 7.50 -2.39 -0.02 1.67 16 33 H -0.02 -1.12 7.04 -2.39 -0.02 -1.14 16 34 H 0.27 15.88 8.31 -92.71 -0.77 15.11 16 35 H 0.16 2.11 8.04 -2.91 -0.02 2.08 16 36 H 0.18 1.50 8.06 -2.91 -0.02 1.48 16 37 H 0.16 2.52 8.06 -2.91 -0.02 2.49 16 38 H 0.11 4.32 7.26 -2.91 -0.02 4.30 16 Total: -1.00 -80.53 328.98 3.10 -77.43 By element: Atomic # 1 Polarization: 24.53 SS G_CDS: 0.36 Total: 24.89 kcal Atomic # 6 Polarization: -23.42 SS G_CDS: 6.34 Total: -17.08 kcal Atomic # 7 Polarization: -120.73 SS G_CDS: -6.27 Total: -127.00 kcal Atomic # 9 Polarization: -5.02 SS G_CDS: 0.78 Total: -4.25 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 1.88 Total: 46.00 kcal Total: -80.53 3.10 -77.43 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000557339306.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.777 kcal (2) G-P(sol) polarization free energy of solvation -80.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.431 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds