Wall clock time and date at job start Tue Mar 31 2020 06:42:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36886 * 126.39806 * 2 1 4 4 C 1.34670 * 106.81588 * 180.02562 * 3 2 1 5 5 N 1.34128 * 108.02237 * 0.02562 * 4 3 2 6 6 C 1.30502 * 109.25609 * 359.72151 * 5 4 3 7 7 C 1.50694 * 125.64996 * 180.29462 * 6 5 4 8 8 H 1.09002 * 109.47128 * 195.17734 * 7 6 5 9 9 N 1.46901 * 109.47304 * 315.17968 * 7 6 5 10 10 C 1.46903 * 110.99550 * 274.99914 * 9 7 6 11 11 C 1.50696 * 109.46915 * 179.97438 * 10 9 7 12 12 H 1.07996 * 120.00376 * 0.02562 * 11 10 9 13 13 C 1.37884 * 120.00039 * 180.02562 * 11 10 9 14 14 N 1.31512 * 119.99921 * 179.97438 * 13 11 10 15 15 Si 1.86795 * 120.00008 * 0.02562 * 13 11 10 16 16 H 1.48506 * 109.47169 * 89.99808 * 15 13 11 17 17 H 1.48496 * 109.47406 * 209.99882 * 15 13 11 18 18 H 1.48504 * 109.46833 * 330.00075 * 15 13 11 19 19 C 1.50704 * 109.47259 * 75.17683 * 7 6 5 20 20 C 1.38260 * 119.98658 * 279.72842 * 19 7 6 21 21 C 1.38226 * 120.05315 * 179.72362 * 20 19 7 22 22 C 1.38221 * 120.02022 * 0.55001 * 21 20 19 23 23 C 1.38434 * 119.97755 * 359.72182 * 22 21 20 24 24 F 1.35102 * 120.02998 * 180.02562 * 23 22 21 25 25 C 1.38176 * 119.98607 * 99.99750 * 19 7 6 26 26 H 1.09002 * 109.47391 * 90.02066 * 1 2 3 27 27 H 1.09001 * 109.46813 * 330.02122 * 1 2 3 28 28 H 1.09004 * 109.47041 * 210.02249 * 1 2 3 29 29 H 1.07997 * 126.58897 * 0.03822 * 3 2 1 30 30 H 1.07999 * 125.98535 * 180.02562 * 4 3 2 31 31 H 1.00894 * 111.00212 * 151.05143 * 9 7 6 32 32 H 1.08999 * 109.47273 * 300.00046 * 10 9 7 33 33 H 1.09004 * 109.47353 * 60.00266 * 10 9 7 34 34 H 0.97003 * 120.00070 * 179.97438 * 14 13 11 35 35 H 1.08006 * 119.97659 * 359.97438 * 20 19 7 36 36 H 1.07997 * 119.99265 * 180.27214 * 21 20 19 37 37 H 1.08002 * 120.01088 * 179.70439 * 22 21 20 38 38 H 1.07997 * 120.01222 * 0.02598 * 25 19 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2773 1.1018 0.0000 4 6 3.5461 0.6505 -0.0006 5 7 3.5096 -0.6903 -0.0015 6 6 2.2663 -1.0870 0.0045 7 6 1.8018 -2.5206 0.0120 8 1 0.7454 -2.5616 -0.2532 9 7 2.5820 -3.2932 -0.9639 10 6 2.0035 -3.1788 -2.3094 11 6 2.8290 -3.9821 -3.2810 12 1 3.6964 -4.5238 -2.9338 13 6 2.4770 -4.0255 -4.6135 14 7 3.1978 -4.7261 -5.4615 15 14 0.9772 -3.0880 -5.2143 16 1 1.3802 -1.7179 -5.6215 17 1 0.3841 -3.7957 -6.3773 18 1 -0.0250 -3.0050 -4.1216 19 6 1.9976 -3.1049 1.3872 20 6 3.2472 -3.5494 1.7777 21 6 3.4296 -4.0803 3.0409 22 6 2.3600 -4.1779 3.9110 23 6 1.1072 -3.7384 3.5191 24 9 0.0612 -3.8329 4.3689 25 6 0.9270 -3.2014 2.2554 26 1 -0.3634 -0.0004 -1.0277 27 1 -0.3633 0.8902 0.5135 28 1 -0.3633 -0.8898 0.5142 29 1 1.9613 2.1345 0.0006 30 1 4.4368 1.2611 -0.0003 31 1 2.6567 -4.2595 -0.6834 32 1 0.9819 -3.5587 -2.2991 33 1 1.9990 -2.1326 -2.6152 34 1 2.9499 -4.7570 -6.3988 35 1 4.0825 -3.4779 1.0968 36 1 4.4070 -4.4231 3.3464 37 1 2.5017 -4.5972 4.8962 38 1 -0.0500 -2.8586 1.9484 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000557339311.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:34 Heat of formation + Delta-G solvation = 54.172899 kcal Electronic energy + Delta-G solvation = -22643.607052 eV Core-core repulsion = 19208.944129 eV Total energy + Delta-G solvation = -3434.662923 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.129 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -48.92032 -41.83631 -39.20031 -35.85925 -33.80961 -32.83664 -31.31773 -30.41380 -29.34513 -27.40452 -26.83299 -24.75367 -22.85518 -21.86064 -21.31609 -20.93577 -19.26124 -17.64034 -17.05384 -16.48377 -16.24216 -16.04153 -15.64128 -15.57616 -14.92869 -14.68702 -14.04160 -13.93503 -13.72168 -13.40386 -13.26380 -12.91654 -12.76068 -12.71293 -12.62759 -12.29448 -12.04770 -11.66384 -11.58327 -11.06588 -10.69112 -10.59928 -9.94156 -9.51005 -9.34453 -9.31669 -9.02545 -8.64423 -8.61573 -8.08994 -7.65115 -6.07746 -4.05420 1.13337 1.21755 2.27907 2.93102 3.24778 3.31132 3.31896 3.49473 3.63307 4.14966 4.38416 4.57386 4.65602 4.71998 4.77582 4.90037 5.02916 5.07546 5.17943 5.24672 5.28672 5.34526 5.40382 5.51677 5.65883 5.78451 5.95538 6.04204 6.11318 6.40820 6.48712 6.55626 6.67089 6.90464 6.91580 7.03801 7.35515 7.53503 7.76936 8.19156 8.51541 8.60372 9.01315 9.53397 11.05560 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.013640 B = 0.005440 C = 0.004675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2052.365997 B = 5146.032485 C = 5987.486645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.463 5.463 3 C -0.070 4.070 4 C -0.031 4.031 5 N -0.451 5.451 6 C 0.230 3.770 7 C 0.211 3.789 8 H 0.056 0.944 9 N -0.651 5.651 10 C 0.168 3.832 11 C -0.512 4.512 12 H 0.083 0.917 13 C 0.071 3.929 14 N -0.898 5.898 15 Si 0.875 3.125 16 H -0.277 1.277 17 H -0.285 1.285 18 H -0.270 1.270 19 C -0.053 4.053 20 C -0.086 4.086 21 C -0.094 4.094 22 C -0.154 4.154 23 C 0.089 3.911 24 F -0.145 7.145 25 C -0.149 4.149 26 H 0.076 0.924 27 H 0.084 0.916 28 H 0.082 0.918 29 H 0.169 0.831 30 H 0.166 0.834 31 H 0.347 0.653 32 H -0.015 1.015 33 H 0.020 0.980 34 H 0.264 0.736 35 H 0.150 0.850 36 H 0.134 0.866 37 H 0.131 0.869 38 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.276 7.619 17.311 19.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.147 5.147 3 C -0.202 4.202 4 C -0.180 4.180 5 N -0.168 5.168 6 C -0.033 4.033 7 C 0.098 3.902 8 H 0.074 0.926 9 N -0.284 5.284 10 C 0.041 3.959 11 C -0.550 4.550 12 H 0.101 0.899 13 C -0.131 4.131 14 N -0.536 5.536 15 Si 0.702 3.298 16 H -0.202 1.202 17 H -0.211 1.211 18 H -0.195 1.195 19 C -0.055 4.055 20 C -0.104 4.104 21 C -0.112 4.112 22 C -0.173 4.173 23 C 0.069 3.931 24 F -0.124 7.124 25 C -0.168 4.168 26 H 0.095 0.905 27 H 0.103 0.897 28 H 0.101 0.899 29 H 0.186 0.814 30 H 0.183 0.817 31 H 0.167 0.833 32 H 0.002 0.998 33 H 0.038 0.962 34 H 0.074 0.926 35 H 0.168 0.832 36 H 0.152 0.848 37 H 0.149 0.851 38 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -5.313 7.543 17.006 19.347 hybrid contribution -2.585 0.744 -0.362 2.714 sum -7.898 8.288 16.643 20.200 Atomic orbital electron populations 1.22017 0.77488 1.04170 1.03620 1.45288 1.07180 1.06790 1.55443 1.22560 0.91629 0.92095 1.13934 1.22348 0.96084 0.91757 1.07802 1.70268 1.18195 1.10712 1.17583 1.22966 0.85776 0.89728 1.04864 1.18457 0.95582 0.86485 0.89691 0.92619 1.60282 1.51270 1.15277 1.01558 1.20051 0.93065 0.97024 0.85783 1.20975 1.12892 1.29482 0.91658 0.89945 1.24864 0.96451 0.95141 0.96662 1.69887 1.39118 1.41104 1.03528 0.86875 0.83805 0.80497 0.78610 1.20233 1.21094 1.19495 1.19623 0.93383 0.97701 0.94786 1.21345 0.97608 0.95390 0.96056 1.21091 0.98517 0.98276 0.93349 1.21140 0.91684 1.03117 1.01375 1.17550 0.84391 1.02603 0.88513 1.91476 1.56518 1.94410 1.69948 1.20934 0.99978 1.03008 0.92895 0.90542 0.89709 0.89889 0.81377 0.81680 0.83287 0.99786 0.96205 0.92614 0.83249 0.84811 0.85057 0.85372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.72 10.76 59.85 0.64 1.36 16 2 N -0.46 -6.77 3.15 -121.28 -0.38 -7.15 16 3 C -0.07 -0.96 11.58 -16.56 -0.19 -1.15 16 4 C -0.03 -0.49 11.87 -17.81 -0.21 -0.70 16 5 N -0.45 -8.61 11.23 -10.82 -0.12 -8.73 16 6 C 0.23 4.04 6.48 -155.41 -1.01 3.04 16 7 C 0.21 3.56 2.48 -70.02 -0.17 3.38 16 8 H 0.06 0.89 6.59 -51.93 -0.34 0.55 16 9 N -0.65 -13.28 5.65 -110.46 -0.62 -13.91 16 10 C 0.17 4.04 4.30 -4.98 -0.02 4.02 16 11 C -0.51 -14.56 9.87 -34.44 -0.34 -14.90 16 12 H 0.08 2.54 8.06 -52.49 -0.42 2.11 16 13 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 14 N -0.90 -27.54 13.96 55.43 0.77 -26.77 16 15 Si 0.87 21.52 27.47 -169.99 -4.67 16.85 16 16 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 17 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 18 H -0.27 -6.30 6.54 56.52 0.37 -5.94 16 19 C -0.05 -0.79 4.70 -104.63 -0.49 -1.28 16 20 C -0.09 -1.22 9.00 -39.58 -0.36 -1.57 16 21 C -0.09 -1.10 10.04 -39.59 -0.40 -1.50 16 22 C -0.15 -1.77 10.03 -39.52 -0.40 -2.16 16 23 C 0.09 1.13 7.30 -39.42 -0.29 0.84 16 24 F -0.14 -1.86 17.27 2.25 0.04 -1.82 16 25 C -0.15 -1.95 9.65 -39.51 -0.38 -2.33 16 26 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.08 0.76 7.31 -51.93 -0.38 0.38 16 29 H 0.17 1.65 8.06 -52.49 -0.42 1.23 16 30 H 0.17 2.17 8.06 -52.49 -0.42 1.75 16 31 H 0.35 6.73 7.97 -39.29 -0.31 6.42 16 32 H -0.02 -0.36 7.12 -51.93 -0.37 -0.73 16 33 H 0.02 0.51 7.42 -51.93 -0.39 0.12 16 34 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 35 H 0.15 2.32 7.71 -52.48 -0.40 1.92 16 36 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 37 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 38 H 0.13 1.44 8.04 -52.49 -0.42 1.02 16 LS Contribution 330.05 15.07 4.97 4.97 Total: -1.00 -33.79 330.05 -8.46 -42.25 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: -4.74 Total: 5.30 kcal Atomic # 6 Polarization: -7.29 SS G_CDS: -3.71 Total: -11.00 kcal Atomic # 7 Polarization: -56.20 SS G_CDS: -0.35 Total: -56.56 kcal Atomic # 9 Polarization: -1.86 SS G_CDS: 0.04 Total: -1.82 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -4.67 Total: 16.85 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -33.79 -8.46 -42.25 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000557339311.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.426 kcal (2) G-P(sol) polarization free energy of solvation -33.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.253 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds