Wall clock time and date at job start Tue Mar 31 2020 06:42:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36886 * 126.39806 * 2 1 4 4 C 1.34670 * 106.81588 * 180.02562 * 3 2 1 5 5 N 1.34128 * 108.02237 * 0.02562 * 4 3 2 6 6 C 1.30502 * 109.25609 * 359.72151 * 5 4 3 7 7 C 1.50694 * 125.64996 * 180.29462 * 6 5 4 8 8 H 1.09002 * 109.47128 * 195.17734 * 7 6 5 9 9 N 1.46901 * 109.47304 * 315.17968 * 7 6 5 10 10 C 1.46903 * 110.99550 * 274.99914 * 9 7 6 11 11 C 1.50696 * 109.46915 * 179.97438 * 10 9 7 12 12 H 1.07996 * 120.00376 * 0.02562 * 11 10 9 13 13 C 1.37884 * 120.00039 * 180.02562 * 11 10 9 14 14 N 1.31512 * 119.99921 * 179.97438 * 13 11 10 15 15 Si 1.86795 * 120.00008 * 0.02562 * 13 11 10 16 16 H 1.48506 * 109.47169 * 89.99808 * 15 13 11 17 17 H 1.48496 * 109.47406 * 209.99882 * 15 13 11 18 18 H 1.48504 * 109.46833 * 330.00075 * 15 13 11 19 19 C 1.50704 * 109.47259 * 75.17683 * 7 6 5 20 20 C 1.38260 * 119.98658 * 279.72842 * 19 7 6 21 21 C 1.38226 * 120.05315 * 179.72362 * 20 19 7 22 22 C 1.38221 * 120.02022 * 0.55001 * 21 20 19 23 23 C 1.38434 * 119.97755 * 359.72182 * 22 21 20 24 24 F 1.35102 * 120.02998 * 180.02562 * 23 22 21 25 25 C 1.38176 * 119.98607 * 99.99750 * 19 7 6 26 26 H 1.09002 * 109.47391 * 90.02066 * 1 2 3 27 27 H 1.09001 * 109.46813 * 330.02122 * 1 2 3 28 28 H 1.09004 * 109.47041 * 210.02249 * 1 2 3 29 29 H 1.07997 * 126.58897 * 0.03822 * 3 2 1 30 30 H 1.07999 * 125.98535 * 180.02562 * 4 3 2 31 31 H 1.00894 * 111.00212 * 151.05143 * 9 7 6 32 32 H 1.08999 * 109.47273 * 300.00046 * 10 9 7 33 33 H 1.09004 * 109.47353 * 60.00266 * 10 9 7 34 34 H 0.97003 * 120.00070 * 179.97438 * 14 13 11 35 35 H 1.08006 * 119.97659 * 359.97438 * 20 19 7 36 36 H 1.07997 * 119.99265 * 180.27214 * 21 20 19 37 37 H 1.08002 * 120.01088 * 179.70439 * 22 21 20 38 38 H 1.07997 * 120.01222 * 0.02598 * 25 19 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2773 1.1018 0.0000 4 6 3.5461 0.6505 -0.0006 5 7 3.5096 -0.6903 -0.0015 6 6 2.2663 -1.0870 0.0045 7 6 1.8018 -2.5206 0.0120 8 1 0.7454 -2.5616 -0.2532 9 7 2.5820 -3.2932 -0.9639 10 6 2.0035 -3.1788 -2.3094 11 6 2.8290 -3.9821 -3.2810 12 1 3.6964 -4.5238 -2.9338 13 6 2.4770 -4.0255 -4.6135 14 7 3.1978 -4.7261 -5.4615 15 14 0.9772 -3.0880 -5.2143 16 1 1.3802 -1.7179 -5.6215 17 1 0.3841 -3.7957 -6.3773 18 1 -0.0250 -3.0050 -4.1216 19 6 1.9976 -3.1049 1.3872 20 6 3.2472 -3.5494 1.7777 21 6 3.4296 -4.0803 3.0409 22 6 2.3600 -4.1779 3.9110 23 6 1.1072 -3.7384 3.5191 24 9 0.0612 -3.8329 4.3689 25 6 0.9270 -3.2014 2.2554 26 1 -0.3634 -0.0004 -1.0277 27 1 -0.3633 0.8902 0.5135 28 1 -0.3633 -0.8898 0.5142 29 1 1.9613 2.1345 0.0006 30 1 4.4368 1.2611 -0.0003 31 1 2.6567 -4.2595 -0.6834 32 1 0.9819 -3.5587 -2.2991 33 1 1.9990 -2.1326 -2.6152 34 1 2.9499 -4.7570 -6.3988 35 1 4.0825 -3.4779 1.0968 36 1 4.4070 -4.4231 3.3464 37 1 2.5017 -4.5972 4.8962 38 1 -0.0500 -2.8586 1.9484 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000557339311.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:33 Heat of formation + Delta-G solvation = 32.213511 kcal Electronic energy + Delta-G solvation = -22644.559282 eV Core-core repulsion = 19208.944129 eV Total energy + Delta-G solvation = -3435.615153 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.129 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.90079 -42.97434 -40.25677 -37.34142 -34.89383 -34.79592 -32.78394 -31.51156 -30.47550 -29.05983 -27.84277 -26.15497 -23.99444 -23.07940 -22.93756 -22.08618 -20.46109 -19.17606 -18.48247 -17.78031 -17.30163 -17.06711 -16.81071 -16.61534 -16.44482 -15.97810 -15.57974 -15.29817 -14.81754 -14.73654 -14.43464 -14.36380 -14.07914 -13.85689 -13.71419 -13.46784 -13.32871 -13.08865 -12.76723 -12.60628 -12.44762 -11.99345 -11.87381 -11.53735 -10.83589 -10.71642 -10.45378 -10.01964 -9.67167 -9.26888 -9.22182 -8.31245 -6.35410 0.13322 0.21974 1.16562 1.29769 1.32185 1.41971 1.92659 2.30098 2.31110 2.60628 3.02332 3.07090 3.43060 3.56268 3.64064 3.83593 3.97256 4.07043 4.12901 4.25291 4.30414 4.34634 4.42812 4.60457 4.62234 4.67961 4.81749 4.85223 4.96421 5.06315 5.12443 5.39436 5.39614 5.46024 5.54030 5.85954 5.92830 5.96787 6.28015 6.49502 6.58226 6.72908 7.28368 7.35678 8.85590 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.013640 B = 0.005440 C = 0.004675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2052.365997 B = 5146.032485 C = 5987.486645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.059 3.941 2 N -0.463 5.463 3 C -0.049 4.049 4 C -0.068 4.068 5 N -0.497 5.497 6 C 0.203 3.797 7 C 0.216 3.784 8 H 0.068 0.932 9 N -0.663 5.663 10 C 0.187 3.813 11 C -0.524 4.524 12 H 0.039 0.961 13 C 0.010 3.990 14 N -0.945 5.945 15 Si 0.947 3.053 16 H -0.273 1.273 17 H -0.277 1.277 18 H -0.246 1.246 19 C -0.066 4.066 20 C -0.102 4.102 21 C -0.089 4.089 22 C -0.146 4.146 23 C 0.082 3.918 24 F -0.144 7.144 25 C -0.148 4.148 26 H 0.079 0.921 27 H 0.119 0.881 28 H 0.091 0.909 29 H 0.212 0.788 30 H 0.180 0.820 31 H 0.348 0.652 32 H -0.005 1.005 33 H 0.009 0.991 34 H 0.268 0.732 35 H 0.126 0.874 36 H 0.159 0.841 37 H 0.160 0.840 38 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.856 9.228 18.949 22.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 N -0.146 5.146 3 C -0.182 4.182 4 C -0.216 4.216 5 N -0.215 5.215 6 C -0.061 4.061 7 C 0.104 3.896 8 H 0.085 0.915 9 N -0.296 5.296 10 C 0.058 3.942 11 C -0.562 4.562 12 H 0.058 0.942 13 C -0.188 4.188 14 N -0.586 5.586 15 Si 0.770 3.230 16 H -0.199 1.199 17 H -0.203 1.203 18 H -0.169 1.169 19 C -0.067 4.067 20 C -0.120 4.120 21 C -0.107 4.107 22 C -0.165 4.165 23 C 0.063 3.937 24 F -0.123 7.123 25 C -0.167 4.167 26 H 0.097 0.903 27 H 0.137 0.863 28 H 0.110 0.890 29 H 0.229 0.771 30 H 0.197 0.803 31 H 0.168 0.832 32 H 0.012 0.988 33 H 0.027 0.973 34 H 0.077 0.923 35 H 0.144 0.856 36 H 0.176 0.824 37 H 0.177 0.823 38 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -7.914 9.151 18.676 22.252 hybrid contribution -1.683 0.246 -0.782 1.872 sum -9.597 9.396 17.894 22.374 Atomic orbital electron populations 1.22378 0.74879 1.06431 1.04510 1.45554 1.08839 1.06082 1.54147 1.23199 0.90725 0.93544 1.10729 1.22795 0.98089 0.91109 1.09611 1.70157 1.19855 1.12686 1.18783 1.22936 0.86114 0.90502 1.06514 1.18434 0.95349 0.86061 0.89798 0.91463 1.60079 1.52575 1.15844 1.01091 1.19683 0.92612 0.95120 0.86760 1.21251 1.12229 1.29608 0.93105 0.94243 1.25834 1.00082 0.96119 0.96748 1.70046 1.41453 1.42977 1.04087 0.85725 0.79864 0.78667 0.78731 1.19894 1.20255 1.16901 1.19463 0.94127 0.98884 0.94231 1.21272 0.96986 0.96783 0.96997 1.21318 0.99931 0.97282 0.92194 1.21451 0.90852 1.01827 1.02323 1.17678 0.84861 1.02741 0.88445 1.91480 1.56574 1.94415 1.69832 1.21021 1.00163 1.02713 0.92816 0.90255 0.86291 0.88993 0.77136 0.80282 0.83197 0.98773 0.97323 0.92343 0.85630 0.82357 0.82257 0.83653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.01 10.76 127.77 1.37 2.39 16 2 N -0.46 -12.52 3.15 -537.61 -1.69 -14.22 16 3 C -0.05 -1.22 11.58 83.09 0.96 -0.25 16 4 C -0.07 -2.13 11.87 83.52 0.99 -1.14 16 5 N -0.50 -19.27 11.23 -188.13 -2.11 -21.38 16 6 C 0.20 7.03 6.48 138.13 0.90 7.93 16 7 C 0.22 7.22 2.48 43.42 0.11 7.33 16 8 H 0.07 2.05 6.59 -2.39 -0.02 2.04 16 9 N -0.66 -27.80 5.65 -503.37 -2.84 -30.65 16 10 C 0.19 9.03 4.30 85.56 0.37 9.40 16 11 C -0.52 -30.85 9.87 25.60 0.25 -30.60 16 12 H 0.04 2.58 8.06 -2.91 -0.02 2.56 16 13 C 0.01 0.58 5.47 84.66 0.46 1.04 16 14 N -0.95 -59.74 13.96 21.45 0.30 -59.44 16 15 Si 0.95 44.23 27.47 68.60 1.88 46.12 16 16 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 17 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 18 H -0.25 -10.41 6.54 99.48 0.65 -9.76 16 19 C -0.07 -1.90 4.70 -19.87 -0.09 -1.99 16 20 C -0.10 -2.92 9.00 22.27 0.20 -2.72 16 21 C -0.09 -1.98 10.04 22.26 0.22 -1.75 16 22 C -0.15 -2.98 10.03 22.31 0.22 -2.76 16 23 C 0.08 1.90 7.30 22.38 0.16 2.06 16 24 F -0.14 -3.34 17.27 44.97 0.78 -2.56 16 25 C -0.15 -3.61 9.65 22.31 0.22 -3.40 16 26 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 27 H 0.12 1.20 8.14 -2.39 -0.02 1.18 16 28 H 0.09 1.39 7.31 -2.38 -0.02 1.37 16 29 H 0.21 3.22 8.06 -2.91 -0.02 3.19 16 30 H 0.18 4.68 8.06 -2.91 -0.02 4.66 16 31 H 0.35 14.13 7.97 -89.70 -0.72 13.41 16 32 H -0.01 -0.24 7.12 -2.39 -0.02 -0.26 16 33 H 0.01 0.44 7.42 -2.38 -0.02 0.42 16 34 H 0.27 15.71 8.31 -92.71 -0.77 14.94 16 35 H 0.13 4.17 7.71 -2.91 -0.02 4.15 16 36 H 0.16 2.62 8.06 -2.91 -0.02 2.60 16 37 H 0.16 2.34 8.06 -2.91 -0.02 2.31 16 38 H 0.15 2.92 8.04 -2.91 -0.02 2.90 16 Total: -1.00 -76.18 330.05 2.97 -73.22 By element: Atomic # 1 Polarization: 23.06 SS G_CDS: 0.31 Total: 23.36 kcal Atomic # 6 Polarization: -20.81 SS G_CDS: 6.35 Total: -14.46 kcal Atomic # 7 Polarization: -119.33 SS G_CDS: -6.35 Total: -125.68 kcal Atomic # 9 Polarization: -3.34 SS G_CDS: 0.78 Total: -2.56 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 1.88 Total: 46.12 kcal Total: -76.18 2.97 -73.22 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000557339311.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.433 kcal (2) G-P(sol) polarization free energy of solvation -76.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.219 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds