Wall clock time and date at job start Tue Mar 31 2020 06:28:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.39565 * 120.47503 * 298.07412 * 3 2 1 5 5 N 1.31674 * 120.68162 * 180.02562 * 4 3 2 6 6 C 1.32522 * 121.80370 * 0.02562 * 5 4 3 7 7 N 1.38717 * 119.54936 * 179.97438 * 6 5 4 8 8 C 1.46841 * 111.00122 * 124.20479 * 7 6 5 9 9 C 1.53042 * 109.52244 * 174.15866 * 8 7 6 10 10 C 1.53116 * 109.28015 * 59.18093 * 9 8 7 11 11 C 1.52994 * 109.52331 * 182.44066 * 10 9 8 12 12 C 1.50700 * 109.47113 * 294.67992 * 11 10 9 13 13 H 1.08002 * 120.00072 * 0.02562 * 12 11 10 14 14 C 1.37882 * 119.99806 * 179.97438 * 12 11 10 15 15 N 1.31517 * 119.99499 * 179.97438 * 14 12 11 16 16 Si 1.86790 * 120.00139 * 0.02562 * 14 12 11 17 17 H 1.48507 * 109.47638 * 89.99687 * 16 14 12 18 18 H 1.48505 * 109.47252 * 209.99648 * 16 14 12 19 19 H 1.48500 * 109.47340 * 329.99542 * 16 14 12 20 20 C 1.53121 * 109.16039 * 302.34575 * 10 9 8 21 21 C 1.46847 * 111.00026 * 359.97438 * 7 6 5 22 22 C 1.39539 * 120.89655 * 359.97438 * 6 5 4 23 23 F 1.35109 * 120.38855 * 179.97438 * 22 6 5 24 24 C 1.38055 * 119.21956 * 0.02562 * 22 6 5 25 25 H 1.07996 * 119.66265 * 0.04263 * 4 3 2 26 26 H 1.09001 * 109.46388 * 294.17475 * 8 7 6 27 27 H 1.09000 * 109.46506 * 54.14705 * 8 7 6 28 28 H 1.09000 * 109.50114 * 299.23512 * 9 8 7 29 29 H 1.09000 * 109.50112 * 179.12198 * 9 8 7 30 30 H 1.08999 * 109.52263 * 62.24514 * 10 9 8 31 31 H 1.09003 * 109.47528 * 54.68318 * 11 10 9 32 32 H 1.09004 * 109.47103 * 174.68117 * 11 10 9 33 33 H 0.97003 * 119.99414 * 180.02562 * 15 14 12 34 34 H 1.09002 * 109.50324 * 297.71261 * 20 10 9 35 35 H 1.08994 * 109.50717 * 177.59326 * 20 10 9 36 36 H 1.08998 * 109.46652 * 305.85860 * 21 7 6 37 37 H 1.08998 * 109.45894 * 65.82793 * 21 7 6 38 38 H 1.07994 * 120.82211 * 180.02562 * 24 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2760 -0.5651 1.0613 5 7 4.5928 -0.5663 1.0657 6 6 5.2950 -0.0363 0.0747 7 7 6.6809 -0.0628 0.1278 8 6 7.2409 -0.7103 -1.0653 9 6 8.7666 -0.5923 -1.0426 10 6 9.3066 -1.2607 0.2247 11 6 10.8262 -1.0930 0.2835 12 6 11.4594 -1.8475 -0.8571 13 1 10.8398 -2.3919 -1.5544 14 6 12.8296 -1.8420 -1.0109 15 7 13.3821 -2.5009 -2.0060 16 14 13.9010 -0.8998 0.1947 17 1 14.2802 -1.7905 1.3209 18 1 15.1272 -0.4275 -0.4972 19 1 13.1476 0.2676 0.7189 20 6 8.6710 -0.6001 1.4512 21 6 7.1481 -0.7174 1.3564 22 6 4.6592 0.5481 -1.0214 23 9 5.3853 1.0860 -2.0258 24 6 3.2796 0.5712 -1.0668 25 1 2.7385 -1.0067 1.8874 26 1 6.9581 -1.7629 -1.0737 27 1 6.8523 -0.2227 -1.9594 28 1 9.0503 0.4601 -1.0481 29 1 9.1829 -1.0866 -1.9204 30 1 9.0565 -2.3216 0.2118 31 1 11.0784 -0.0355 0.2040 32 1 11.1987 -1.4852 1.2298 33 1 14.3461 -2.4973 -2.1140 34 1 8.9533 0.4522 1.4850 35 1 9.0189 -1.1000 2.3551 36 1 6.6920 -0.2352 2.2210 37 1 6.8657 -1.7700 1.3369 38 1 2.7609 1.0164 -1.9028 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000565772113.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:38 Heat of formation + Delta-G solvation = 24.193373 kcal Electronic energy + Delta-G solvation = -22181.462755 eV Core-core repulsion = 18745.499823 eV Total energy + Delta-G solvation = -3435.962933 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.129 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -49.26220 -41.00711 -38.84521 -36.92809 -34.95720 -32.91713 -32.39291 -30.75929 -30.63035 -28.30788 -25.10735 -24.50971 -23.17714 -22.58654 -20.76916 -19.74078 -19.22385 -17.90021 -17.76122 -16.69233 -16.56396 -16.20487 -15.14225 -15.01151 -14.53983 -14.37657 -14.25433 -13.91075 -13.74430 -13.68110 -13.45471 -13.27192 -12.90291 -12.85671 -12.59441 -12.12437 -11.98560 -11.56229 -11.11660 -10.92332 -10.72128 -10.47300 -10.29804 -10.16250 -9.95793 -9.77133 -9.65439 -9.37128 -9.06584 -8.54426 -8.32239 -6.05369 -4.02856 0.08104 0.56957 2.20524 2.44092 3.05600 3.29906 3.30395 3.38036 3.41395 3.42128 3.82929 3.92886 4.19698 4.44501 4.46986 4.86862 5.09204 5.12401 5.16970 5.24003 5.31662 5.33139 5.48192 5.60953 5.67692 5.86127 5.90151 6.04037 6.16581 6.19491 6.43159 6.59431 6.79723 6.80783 6.91585 6.94384 7.03682 7.23357 7.39891 7.43435 7.78778 8.52293 8.99151 9.57751 11.07902 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.039481 B = 0.003218 C = 0.003094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.026063 B = 8699.374807 C = 9048.625192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.413 5.413 2 C 0.265 3.735 3 C -0.102 4.102 4 C 0.181 3.819 5 N -0.497 5.497 6 C 0.331 3.669 7 N -0.466 5.466 8 C 0.046 3.954 9 C -0.101 4.101 10 C -0.076 4.076 11 C -0.008 4.008 12 C -0.516 4.516 13 H 0.073 0.927 14 C 0.065 3.935 15 N -0.904 5.904 16 Si 0.878 3.122 17 H -0.278 1.278 18 H -0.289 1.289 19 H -0.265 1.265 20 C -0.120 4.120 21 C 0.068 3.932 22 C 0.028 3.972 23 F -0.114 7.114 24 C -0.038 4.038 25 H 0.173 0.827 26 H 0.051 0.949 27 H 0.091 0.909 28 H 0.068 0.932 29 H 0.089 0.911 30 H 0.062 0.938 31 H 0.017 0.983 32 H 0.011 0.989 33 H 0.262 0.738 34 H 0.067 0.933 35 H 0.070 0.930 36 H 0.083 0.917 37 H 0.054 0.946 38 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.016 5.639 4.780 20.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.089 5.089 2 C -0.051 4.051 3 C -0.109 4.109 4 C 0.018 3.982 5 N -0.211 5.211 6 C 0.095 3.905 7 N -0.180 5.180 8 C -0.079 4.079 9 C -0.139 4.139 10 C -0.095 4.095 11 C -0.046 4.046 12 C -0.554 4.554 13 H 0.091 0.909 14 C -0.136 4.136 15 N -0.543 5.543 16 Si 0.706 3.294 17 H -0.204 1.204 18 H -0.215 1.215 19 H -0.190 1.190 20 C -0.158 4.158 21 C -0.058 4.058 22 C 0.003 3.997 23 F -0.093 7.093 24 C -0.067 4.067 25 H 0.190 0.810 26 H 0.069 0.931 27 H 0.110 0.890 28 H 0.086 0.914 29 H 0.107 0.893 30 H 0.080 0.920 31 H 0.035 0.965 32 H 0.030 0.970 33 H 0.072 0.928 34 H 0.086 0.914 35 H 0.089 0.911 36 H 0.102 0.898 37 H 0.073 0.927 38 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -19.796 5.713 5.348 21.286 hybrid contribution 0.599 0.338 -0.296 0.749 sum -19.196 6.051 5.052 20.752 Atomic orbital electron populations 1.81297 1.11755 1.08612 1.07216 1.25186 0.91987 0.93800 0.94143 1.16590 0.85716 1.09696 0.98943 1.22827 0.88752 0.91360 0.95218 1.67936 1.07902 1.18492 1.26737 1.20397 0.91348 0.90254 0.88465 1.58816 1.00885 1.51174 1.07167 1.22680 0.98394 0.96807 0.89974 1.21618 0.89856 1.02088 1.00329 1.21117 0.97626 0.98462 0.92279 1.19601 0.90776 0.97019 0.97161 1.21136 0.92059 1.30967 1.11276 0.90923 1.25034 0.98171 0.95099 0.95247 1.69916 1.11020 1.42613 1.30797 0.86805 0.80085 0.81021 0.81513 1.20415 1.21518 1.18975 1.21845 0.92335 1.01979 0.99665 1.22138 0.96515 0.97590 0.89547 1.17778 0.89175 1.04069 0.88701 1.91522 1.76648 1.83520 1.57601 1.21442 0.91697 0.95474 0.98063 0.80953 0.93114 0.89045 0.91371 0.89268 0.91959 0.96478 0.97024 0.92801 0.91439 0.91143 0.89818 0.92717 0.82517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.41 -4.48 18.54 41.84 0.78 -3.70 16 2 C 0.26 2.25 15.37 -22.47 -0.35 1.90 16 3 C -0.10 -0.75 5.75 -106.68 -0.61 -1.36 16 4 C 0.18 1.35 10.91 -17.12 -0.19 1.16 16 5 N -0.50 -5.08 8.63 -12.06 -0.10 -5.18 16 6 C 0.33 3.77 6.41 -155.04 -0.99 2.78 16 7 N -0.47 -6.10 4.62 -173.16 -0.80 -6.89 16 8 C 0.05 0.62 5.15 -3.83 -0.02 0.60 16 9 C -0.10 -1.69 5.15 -26.65 -0.14 -1.83 16 10 C -0.08 -1.37 2.20 -90.50 -0.20 -1.56 16 11 C -0.01 -0.18 3.52 -27.89 -0.10 -0.28 16 12 C -0.52 -13.92 9.00 -34.44 -0.31 -14.23 16 13 H 0.07 2.09 7.32 -52.49 -0.38 1.70 16 14 C 0.07 1.85 5.47 -17.82 -0.10 1.75 16 15 N -0.90 -27.25 13.96 55.43 0.77 -26.47 16 16 Si 0.88 21.26 27.47 -169.99 -4.67 16.59 16 17 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 18 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 19 H -0.27 -6.16 6.54 56.52 0.37 -5.79 16 20 C -0.12 -1.77 5.38 -26.65 -0.14 -1.92 16 21 C 0.07 0.87 4.64 -3.83 -0.02 0.86 16 22 C 0.03 0.28 6.96 -39.16 -0.27 0.01 16 23 F -0.11 -1.29 14.74 2.25 0.03 -1.26 16 24 C -0.04 -0.29 9.88 -38.85 -0.38 -0.67 16 25 H 0.17 0.80 8.06 -52.49 -0.42 0.38 16 26 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.09 1.17 5.51 -51.93 -0.29 0.88 16 28 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 29 H 0.09 1.65 7.05 -51.93 -0.37 1.28 16 30 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 31 H 0.02 0.39 7.20 -51.93 -0.37 0.01 16 32 H 0.01 0.26 7.57 -51.93 -0.39 -0.13 16 33 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 34 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.08 1.01 7.70 -51.93 -0.40 0.61 16 37 H 0.05 0.71 8.11 -51.93 -0.42 0.29 16 38 H 0.16 0.83 8.06 -52.49 -0.42 0.41 16 LS Contribution 320.10 15.07 4.82 4.82 Total: -1.00 -30.38 320.10 -7.74 -38.12 By element: Atomic # 1 Polarization: 1.53 SS G_CDS: -4.75 Total: -3.22 kcal Atomic # 6 Polarization: -8.98 SS G_CDS: -3.82 Total: -12.80 kcal Atomic # 7 Polarization: -42.90 SS G_CDS: 0.65 Total: -42.25 kcal Atomic # 9 Polarization: -1.29 SS G_CDS: 0.03 Total: -1.26 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -4.67 Total: 16.59 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -30.38 -7.74 -38.12 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565772113.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.309 kcal (2) G-P(sol) polarization free energy of solvation -30.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.115 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds