Wall clock time and date at job start Tue Mar 31 2020 06:28:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.39565 * 120.47503 * 298.07412 * 3 2 1 5 5 N 1.31674 * 120.68162 * 180.02562 * 4 3 2 6 6 C 1.32522 * 121.80370 * 0.02562 * 5 4 3 7 7 N 1.38717 * 119.54936 * 179.97438 * 6 5 4 8 8 C 1.46841 * 111.00122 * 124.20479 * 7 6 5 9 9 C 1.53042 * 109.52244 * 174.15866 * 8 7 6 10 10 C 1.53116 * 109.28015 * 59.18093 * 9 8 7 11 11 C 1.52994 * 109.52331 * 182.44066 * 10 9 8 12 12 C 1.50700 * 109.47113 * 294.67992 * 11 10 9 13 13 H 1.08002 * 120.00072 * 0.02562 * 12 11 10 14 14 C 1.37882 * 119.99806 * 179.97438 * 12 11 10 15 15 N 1.31517 * 119.99499 * 179.97438 * 14 12 11 16 16 Si 1.86790 * 120.00139 * 0.02562 * 14 12 11 17 17 H 1.48507 * 109.47638 * 89.99687 * 16 14 12 18 18 H 1.48505 * 109.47252 * 209.99648 * 16 14 12 19 19 H 1.48500 * 109.47340 * 329.99542 * 16 14 12 20 20 C 1.53121 * 109.16039 * 302.34575 * 10 9 8 21 21 C 1.46847 * 111.00026 * 359.97438 * 7 6 5 22 22 C 1.39539 * 120.89655 * 359.97438 * 6 5 4 23 23 F 1.35109 * 120.38855 * 179.97438 * 22 6 5 24 24 C 1.38055 * 119.21956 * 0.02562 * 22 6 5 25 25 H 1.07996 * 119.66265 * 0.04263 * 4 3 2 26 26 H 1.09001 * 109.46388 * 294.17475 * 8 7 6 27 27 H 1.09000 * 109.46506 * 54.14705 * 8 7 6 28 28 H 1.09000 * 109.50114 * 299.23512 * 9 8 7 29 29 H 1.09000 * 109.50112 * 179.12198 * 9 8 7 30 30 H 1.08999 * 109.52263 * 62.24514 * 10 9 8 31 31 H 1.09003 * 109.47528 * 54.68318 * 11 10 9 32 32 H 1.09004 * 109.47103 * 174.68117 * 11 10 9 33 33 H 0.97003 * 119.99414 * 180.02562 * 15 14 12 34 34 H 1.09002 * 109.50324 * 297.71261 * 20 10 9 35 35 H 1.08994 * 109.50717 * 177.59326 * 20 10 9 36 36 H 1.08998 * 109.46652 * 305.85860 * 21 7 6 37 37 H 1.08998 * 109.45894 * 65.82793 * 21 7 6 38 38 H 1.07994 * 120.82211 * 180.02562 * 24 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2760 -0.5651 1.0613 5 7 4.5928 -0.5663 1.0657 6 6 5.2950 -0.0363 0.0747 7 7 6.6809 -0.0628 0.1278 8 6 7.2409 -0.7103 -1.0653 9 6 8.7666 -0.5923 -1.0426 10 6 9.3066 -1.2607 0.2247 11 6 10.8262 -1.0930 0.2835 12 6 11.4594 -1.8475 -0.8571 13 1 10.8398 -2.3919 -1.5544 14 6 12.8296 -1.8420 -1.0109 15 7 13.3821 -2.5009 -2.0060 16 14 13.9010 -0.8998 0.1947 17 1 14.2802 -1.7905 1.3209 18 1 15.1272 -0.4275 -0.4972 19 1 13.1476 0.2676 0.7189 20 6 8.6710 -0.6001 1.4512 21 6 7.1481 -0.7174 1.3564 22 6 4.6592 0.5481 -1.0214 23 9 5.3853 1.0860 -2.0258 24 6 3.2796 0.5712 -1.0668 25 1 2.7385 -1.0067 1.8874 26 1 6.9581 -1.7629 -1.0737 27 1 6.8523 -0.2227 -1.9594 28 1 9.0503 0.4601 -1.0481 29 1 9.1829 -1.0866 -1.9204 30 1 9.0565 -2.3216 0.2118 31 1 11.0784 -0.0355 0.2040 32 1 11.1987 -1.4852 1.2298 33 1 14.3461 -2.4973 -2.1140 34 1 8.9533 0.4522 1.4850 35 1 9.0189 -1.1000 2.3551 36 1 6.6920 -0.2352 2.2210 37 1 6.8657 -1.7700 1.3369 38 1 2.7609 1.0164 -1.9028 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000565772113.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:37 Heat of formation + Delta-G solvation = 6.786687 kcal Electronic energy + Delta-G solvation = -22182.217566 eV Core-core repulsion = 18745.499823 eV Total energy + Delta-G solvation = -3436.717743 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.129 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -50.05171 -41.81197 -39.87166 -37.75196 -36.28542 -34.41920 -33.54650 -31.93318 -31.68586 -29.79623 -26.36751 -25.34097 -24.41607 -23.64733 -22.25409 -20.62673 -20.43116 -18.97866 -18.59307 -18.50506 -17.29776 -17.01561 -16.35517 -16.01364 -15.89136 -15.53575 -15.20435 -15.10880 -14.79245 -14.62577 -14.54146 -14.28597 -14.16535 -13.83974 -13.75657 -13.50643 -13.23271 -13.03333 -12.74577 -12.39490 -12.14471 -11.95826 -11.66387 -11.32836 -11.14835 -11.00977 -10.91235 -10.83826 -10.69334 -10.63694 -9.18369 -8.23415 -6.25155 -0.63567 -0.08360 1.38347 1.40487 1.51374 1.51826 1.71267 2.24634 2.40350 2.61209 2.69577 3.06468 3.12580 3.22954 3.62325 3.72447 3.90581 3.96059 4.03918 4.25447 4.31224 4.40294 4.51800 4.57616 4.69010 4.73855 4.77666 4.92024 4.96829 5.06358 5.21876 5.24578 5.31901 5.39405 5.48307 5.65109 5.74515 5.77860 5.97214 6.34752 6.36539 6.66092 6.82618 7.38756 8.93079 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.039481 B = 0.003218 C = 0.003094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.026063 B = 8699.374807 C = 9048.625192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C 0.292 3.708 3 C -0.089 4.089 4 C 0.190 3.810 5 N -0.508 5.508 6 C 0.315 3.685 7 N -0.478 5.478 8 C 0.059 3.941 9 C -0.096 4.096 10 C -0.073 4.073 11 C -0.006 4.006 12 C -0.517 4.517 13 H 0.037 0.963 14 C 0.001 3.999 15 N -0.954 5.954 16 Si 0.945 3.055 17 H -0.269 1.269 18 H -0.289 1.289 19 H -0.246 1.246 20 C -0.112 4.112 21 C 0.077 3.923 22 C 0.014 3.986 23 F -0.125 7.125 24 C -0.020 4.020 25 H 0.204 0.796 26 H 0.050 0.950 27 H 0.099 0.901 28 H 0.062 0.938 29 H 0.059 0.941 30 H 0.051 0.949 31 H 0.017 0.983 32 H 0.017 0.983 33 H 0.263 0.737 34 H 0.066 0.934 35 H 0.081 0.919 36 H 0.098 0.902 37 H 0.054 0.946 38 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.860 6.800 6.684 22.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.126 5.126 2 C -0.024 4.024 3 C -0.096 4.096 4 C 0.028 3.972 5 N -0.222 5.222 6 C 0.081 3.919 7 N -0.193 5.193 8 C -0.066 4.066 9 C -0.134 4.134 10 C -0.092 4.092 11 C -0.044 4.044 12 C -0.555 4.555 13 H 0.056 0.944 14 C -0.195 4.195 15 N -0.596 5.596 16 Si 0.769 3.231 17 H -0.194 1.194 18 H -0.215 1.215 19 H -0.170 1.170 20 C -0.150 4.150 21 C -0.049 4.049 22 C -0.011 4.011 23 F -0.104 7.104 24 C -0.048 4.048 25 H 0.221 0.779 26 H 0.068 0.932 27 H 0.117 0.883 28 H 0.081 0.919 29 H 0.078 0.922 30 H 0.070 0.930 31 H 0.035 0.965 32 H 0.035 0.965 33 H 0.072 0.928 34 H 0.085 0.915 35 H 0.100 0.900 36 H 0.116 0.884 37 H 0.072 0.928 38 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -21.676 6.883 7.267 23.876 hybrid contribution 1.033 -0.080 -0.944 1.402 sum -20.643 6.802 6.323 22.636 Atomic orbital electron populations 1.81348 1.12903 1.09893 1.08470 1.25079 0.91718 0.92614 0.92948 1.16535 0.85011 1.09230 0.98873 1.23311 0.87885 0.90194 0.95793 1.67944 1.08995 1.18797 1.26444 1.20363 0.90598 0.91388 0.89580 1.58766 1.02394 1.51666 1.06471 1.22423 0.95892 0.97129 0.91175 1.21454 0.92364 1.01022 0.98588 1.21020 0.95012 0.98480 0.94687 1.19568 0.93636 0.95951 0.95204 1.21486 0.91967 1.30263 1.11746 0.94447 1.25979 0.99926 0.96360 0.97230 1.70074 1.11396 1.44892 1.33191 0.85728 0.78016 0.80197 0.79114 1.19412 1.21525 1.16992 1.21740 0.93690 1.01470 0.98090 1.22023 0.94884 0.97785 0.90178 1.17881 0.89925 1.04857 0.88437 1.91493 1.77057 1.83805 1.58019 1.21663 0.90682 0.94005 0.98492 0.77890 0.93151 0.88268 0.91929 0.92248 0.93001 0.96483 0.96499 0.92798 0.91518 0.90011 0.88377 0.92815 0.80078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -8.75 18.54 19.00 0.35 -8.39 16 2 C 0.29 4.07 15.37 88.33 1.36 5.43 16 3 C -0.09 -1.01 5.75 -21.20 -0.12 -1.13 16 4 C 0.19 2.17 10.91 85.04 0.93 3.10 16 5 N -0.51 -8.94 8.63 -192.06 -1.66 -10.60 16 6 C 0.31 6.53 6.41 133.22 0.85 7.38 16 7 N -0.48 -11.83 4.62 -701.76 -3.24 -15.07 16 8 C 0.06 1.58 5.15 86.33 0.44 2.03 16 9 C -0.10 -3.30 5.15 30.65 0.16 -3.14 16 10 C -0.07 -2.63 2.20 -10.72 -0.02 -2.66 16 11 C -0.01 -0.28 3.52 29.85 0.11 -0.17 16 12 C -0.52 -28.71 9.00 25.60 0.23 -28.48 16 13 H 0.04 2.28 7.32 -2.91 -0.02 2.26 16 14 C 0.00 0.06 5.47 84.66 0.46 0.53 16 15 N -0.95 -59.41 13.96 21.45 0.30 -59.11 16 16 Si 0.95 43.88 27.47 68.60 1.88 45.77 16 17 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 18 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 19 H -0.25 -10.59 6.54 99.48 0.65 -9.94 16 20 C -0.11 -3.13 5.38 30.65 0.16 -2.96 16 21 C 0.08 1.84 4.64 86.33 0.40 2.24 16 22 C 0.01 0.25 6.96 22.54 0.16 0.40 16 23 F -0.13 -2.66 14.74 44.97 0.66 -2.00 16 24 C -0.02 -0.24 9.88 22.74 0.22 -0.02 16 25 H 0.20 1.00 8.06 -2.91 -0.02 0.98 16 26 H 0.05 1.34 8.14 -2.39 -0.02 1.33 16 27 H 0.10 2.52 5.51 -2.39 -0.01 2.51 16 28 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 29 H 0.06 2.34 7.05 -2.39 -0.02 2.33 16 30 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 31 H 0.02 0.76 7.20 -2.39 -0.02 0.74 16 32 H 0.02 0.73 7.57 -2.38 -0.02 0.71 16 33 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16 34 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 35 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 36 H 0.10 2.09 7.70 -2.39 -0.02 2.07 16 37 H 0.05 1.29 8.11 -2.39 -0.02 1.27 16 38 H 0.18 1.27 8.06 -2.91 -0.02 1.25 16 Total: -1.00 -67.34 320.10 4.67 -62.67 By element: Atomic # 1 Polarization: 3.17 SS G_CDS: 1.03 Total: 4.19 kcal Atomic # 6 Polarization: -22.80 SS G_CDS: 5.34 Total: -17.46 kcal Atomic # 7 Polarization: -88.93 SS G_CDS: -4.25 Total: -93.18 kcal Atomic # 9 Polarization: -2.66 SS G_CDS: 0.66 Total: -2.00 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 1.88 Total: 45.77 kcal Total: -67.34 4.67 -62.67 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565772113.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.455 kcal (2) G-P(sol) polarization free energy of solvation -67.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.669 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds