Wall clock time and date at job start Tue Mar 31 2020 06:46:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86801 * 120.00024 * 2 1 4 4 H 1.48497 * 109.46971 * 270.00102 * 3 2 1 5 5 H 1.48497 * 109.47257 * 30.00116 * 3 2 1 6 6 H 1.48498 * 109.46991 * 150.00165 * 3 2 1 7 7 C 1.37880 * 120.00148 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00501 * 179.97438 * 7 2 1 9 9 C 1.50708 * 119.99705 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.46961 * 179.97438 * 9 7 2 11 11 N 1.46497 * 109.46950 * 179.97438 * 10 9 7 12 12 C 1.34780 * 119.99939 * 180.02562 * 11 10 9 13 13 O 1.21286 * 119.99613 * 359.97438 * 12 11 10 14 14 C 1.50700 * 120.00160 * 180.02562 * 12 11 10 15 15 C 1.50697 * 109.46933 * 179.97438 * 14 12 11 16 16 C 1.38286 * 120.01378 * 270.01861 * 15 14 12 17 17 C 1.37965 * 119.96674 * 180.02562 * 16 15 14 18 18 C 1.39151 * 120.21192 * 0.04617 * 17 16 15 19 19 C 1.38369 * 119.69228 * 359.81552 * 18 17 16 20 20 C 1.38106 * 120.00599 * 90.00064 * 15 14 12 21 21 C 1.50770 * 121.41162 * 180.31142 * 19 18 17 22 22 C 1.53075 * 109.68771 * 342.21296 * 21 19 18 23 23 C 1.53407 * 108.29127 * 48.18900 * 22 21 19 24 24 O 1.35844 * 118.50197 * 179.75921 * 18 17 16 25 25 H 0.97001 * 120.00538 * 359.97438 * 1 2 3 26 26 H 1.08999 * 109.47371 * 59.99771 * 9 7 2 27 27 H 1.09002 * 109.46838 * 299.99352 * 9 7 2 28 28 H 1.08999 * 109.47250 * 59.99716 * 10 9 7 29 29 H 1.09006 * 109.46891 * 299.99880 * 10 9 7 30 30 H 0.96996 * 120.00024 * 359.97438 * 11 10 9 31 31 H 1.09000 * 109.46891 * 59.99300 * 14 12 11 32 32 H 1.09002 * 109.46783 * 299.99441 * 14 12 11 33 33 H 1.08005 * 120.01819 * 0.06473 * 16 15 14 34 34 H 1.08000 * 119.89633 * 179.97438 * 17 16 15 35 35 H 1.07998 * 119.84627 * 0.02562 * 20 15 14 36 36 H 1.08998 * 109.44213 * 102.25510 * 21 19 18 37 37 H 1.09001 * 109.44083 * 222.14299 * 21 19 18 38 38 H 1.08997 * 109.66773 * 288.50700 * 22 21 19 39 39 H 1.08997 * 109.72892 * 167.90601 * 22 21 19 40 40 H 1.09002 * 109.68065 * 175.58527 * 23 22 21 41 41 H 1.08999 * 109.68092 * 55.07058 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5466 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 7 1.5127 -4.9308 0.0012 12 6 2.1866 -6.0981 0.0018 13 8 3.3994 -6.0980 0.0014 14 6 1.4331 -7.4032 0.0018 15 6 2.4124 -8.5485 0.0020 16 6 2.8623 -9.0741 -1.1954 17 6 3.7584 -10.1231 -1.1942 18 6 4.2113 -10.6557 0.0090 19 6 3.7617 -10.1258 1.2055 20 6 2.8612 -9.0734 1.1980 21 6 4.2321 -10.6683 2.5312 22 6 4.8430 -12.0577 2.3324 23 6 5.8261 -11.9877 1.1568 24 8 5.0896 -11.6913 -0.0303 25 1 -0.4851 0.8400 0.0004 26 1 0.6246 -2.5572 -0.8896 27 1 0.6240 -2.5567 0.8904 28 1 2.8719 -3.6044 0.8905 29 1 2.8719 -3.6044 -0.8895 30 1 0.5427 -4.9308 0.0019 31 1 0.8067 -7.4611 -0.8884 32 1 0.8061 -7.4606 0.8916 33 1 2.5127 -8.6632 -2.1311 34 1 4.1087 -10.5329 -2.1300 35 1 2.5083 -8.6614 2.1318 36 1 4.9831 -9.9991 2.9511 37 1 3.3864 -10.7384 3.2153 38 1 4.0546 -12.7767 2.1097 39 1 5.3720 -12.3599 3.2362 40 1 6.3331 -12.9461 1.0446 41 1 6.5605 -11.2031 1.3387 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000574086425.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:57 Heat of formation + Delta-G solvation = -75.675387 kcal Electronic energy + Delta-G solvation = -21758.560083 eV Core-core repulsion = 18409.434070 eV Total energy + Delta-G solvation = -3349.126013 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.81945 -39.32112 -37.59385 -34.82080 -34.50224 -32.86744 -32.34720 -30.58820 -29.75611 -27.67047 -25.69350 -24.60221 -23.41326 -22.47532 -21.04290 -20.31518 -19.47011 -17.88968 -16.87005 -16.77601 -16.29933 -15.95849 -15.30895 -15.05167 -14.62172 -14.57365 -14.45152 -14.04855 -14.00474 -13.53130 -13.34537 -13.13121 -13.04023 -12.53099 -12.30359 -11.94030 -11.66963 -11.46662 -11.20605 -11.15826 -11.02704 -10.92936 -10.64146 -10.58143 -10.31953 -9.78479 -9.46047 -9.18828 -8.81545 -8.53043 -8.33961 -8.08723 -6.09847 -4.12598 1.28945 1.35256 3.05444 3.11712 3.29147 3.35193 3.39250 3.54591 3.94901 4.35236 4.42022 4.43542 4.51284 4.69190 4.75503 4.90728 5.06891 5.16649 5.21953 5.27202 5.28909 5.32813 5.38287 5.48436 5.54776 5.56691 5.73704 5.79655 6.00055 6.18529 6.33616 6.35879 6.37303 6.58790 6.72012 6.74911 6.95027 7.33935 7.51841 7.61707 7.88581 8.04938 8.28059 8.70341 8.93550 9.52250 11.01740 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.035674 B = 0.002459 C = 0.002424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.689617 B =11384.789465 C =11550.595037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.059 3.941 3 Si 0.897 3.103 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.522 4.522 8 H 0.059 0.941 9 C 0.013 3.987 10 C 0.122 3.878 11 N -0.725 5.725 12 C 0.504 3.496 13 O -0.543 6.543 14 C -0.101 4.101 15 C -0.088 4.088 16 C -0.072 4.072 17 C -0.147 4.147 18 C 0.126 3.874 19 C -0.160 4.160 20 C -0.070 4.070 21 C -0.078 4.078 22 C -0.159 4.159 23 C 0.060 3.940 24 O -0.319 6.319 25 H 0.262 0.738 26 H 0.022 0.978 27 H 0.022 0.978 28 H 0.054 0.946 29 H 0.055 0.945 30 H 0.397 0.603 31 H 0.100 0.900 32 H 0.099 0.901 33 H 0.127 0.873 34 H 0.129 0.871 35 H 0.122 0.878 36 H 0.077 0.923 37 H 0.081 0.919 38 H 0.076 0.924 39 H 0.083 0.917 40 H 0.105 0.895 41 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.451 -25.141 2.956 25.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.724 3.276 4 H -0.205 1.205 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.560 4.560 8 H 0.077 0.923 9 C -0.025 4.025 10 C 0.000 4.000 11 N -0.375 5.375 12 C 0.289 3.711 13 O -0.420 6.420 14 C -0.141 4.141 15 C -0.089 4.089 16 C -0.091 4.091 17 C -0.165 4.165 18 C 0.081 3.919 19 C -0.161 4.161 20 C -0.088 4.088 21 C -0.115 4.115 22 C -0.196 4.196 23 C -0.015 4.015 24 O -0.233 6.233 25 H 0.072 0.928 26 H 0.040 0.960 27 H 0.040 0.960 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.231 0.769 31 H 0.119 0.881 32 H 0.117 0.883 33 H 0.145 0.855 34 H 0.146 0.854 35 H 0.140 0.860 36 H 0.096 0.904 37 H 0.099 0.901 38 H 0.095 0.905 39 H 0.102 0.898 40 H 0.123 0.877 41 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 5.233 -25.120 2.809 25.812 hybrid contribution -0.077 1.140 0.242 1.168 sum 5.157 -23.980 3.051 24.717 Atomic orbital electron populations 1.69950 1.06083 1.26873 1.50425 1.24997 0.94898 0.99411 0.94998 0.86513 0.79843 0.83002 0.78213 1.20545 1.21158 1.19740 1.21063 0.93247 0.90429 1.51291 0.92282 1.19323 0.94203 0.91148 0.97809 1.21697 0.96019 0.81625 1.00679 1.46346 1.10482 1.06543 1.74138 1.20490 0.88348 0.85275 0.76939 1.90696 1.13964 1.87717 1.49665 1.20654 0.97491 0.90920 1.05037 1.19169 0.99604 0.96851 0.93264 1.20765 0.95799 0.94722 0.97765 1.20501 1.01331 0.98501 0.96208 1.18632 0.91320 0.88584 0.93365 1.19695 1.02059 1.00293 0.94057 1.20703 0.95797 0.94558 0.97718 1.20460 1.01142 0.95709 0.94173 1.22227 1.00009 0.98032 0.99381 1.22941 0.93021 1.01884 0.83626 1.85968 1.52654 1.47374 1.37326 0.92845 0.95956 0.95955 0.92712 0.92670 0.76924 0.88137 0.88254 0.85489 0.85351 0.85989 0.90434 0.90068 0.90504 0.89836 0.87707 0.91811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.12 13.29 55.43 0.74 -25.39 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.90 21.43 29.54 -169.99 -5.02 16.41 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.27 -6.43 7.11 56.52 0.40 -6.02 16 7 C -0.52 -14.53 9.11 -34.44 -0.31 -14.84 16 8 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 9 C 0.01 0.31 5.09 -27.88 -0.14 0.17 16 10 C 0.12 2.61 5.61 -4.04 -0.02 2.59 16 11 N -0.72 -12.45 5.56 -60.29 -0.33 -12.78 16 12 C 0.50 8.41 7.82 -10.98 -0.09 8.33 16 13 O -0.54 -11.36 16.03 5.55 0.09 -11.27 16 14 C -0.10 -1.19 5.83 -29.04 -0.17 -1.36 16 15 C -0.09 -1.14 4.37 -104.65 -0.46 -1.60 16 16 C -0.07 -0.91 9.70 -39.66 -0.38 -1.29 16 17 C -0.15 -1.84 9.94 -39.34 -0.39 -2.23 16 18 C 0.13 1.60 6.47 -39.19 -0.25 1.34 16 19 C -0.16 -1.92 5.75 -104.44 -0.60 -2.52 16 20 C -0.07 -0.87 9.32 -39.53 -0.37 -1.24 16 21 C -0.08 -0.69 5.86 -27.81 -0.16 -0.86 16 22 C -0.16 -1.14 6.20 -26.48 -0.16 -1.30 16 23 C 0.06 0.49 7.02 37.37 0.26 0.75 16 24 O -0.32 -3.72 10.27 -19.25 -0.20 -3.92 16 25 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 26 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.05 1.23 8.14 -51.93 -0.42 0.80 16 29 H 0.05 1.24 8.14 -51.93 -0.42 0.81 16 30 H 0.40 5.77 8.47 -40.82 -0.35 5.42 16 31 H 0.10 0.95 8.09 -51.93 -0.42 0.53 16 32 H 0.10 0.95 8.09 -51.93 -0.42 0.53 16 33 H 0.13 1.38 8.06 -52.48 -0.42 0.95 16 34 H 0.13 1.39 8.06 -52.49 -0.42 0.96 16 35 H 0.12 1.35 8.06 -52.49 -0.42 0.92 16 36 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 37 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 39 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.10 0.59 8.14 -51.93 -0.42 0.16 16 41 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 345.84 15.07 5.21 5.21 Total: -1.00 -33.54 345.84 -9.09 -42.63 By element: Atomic # 1 Polarization: 7.84 SS G_CDS: -6.22 Total: 1.61 kcal Atomic # 6 Polarization: -9.16 SS G_CDS: -3.35 Total: -12.51 kcal Atomic # 7 Polarization: -38.57 SS G_CDS: 0.40 Total: -38.17 kcal Atomic # 8 Polarization: -15.08 SS G_CDS: -0.11 Total: -15.19 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -33.54 -9.09 -42.63 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000574086425.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.043 kcal (2) G-P(sol) polarization free energy of solvation -33.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds