Wall clock time and date at job start Tue Mar 31 2020 06:46:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86801 * 120.00024 * 2 1 4 4 H 1.48497 * 109.46971 * 270.00102 * 3 2 1 5 5 H 1.48497 * 109.47257 * 30.00116 * 3 2 1 6 6 H 1.48498 * 109.46991 * 150.00165 * 3 2 1 7 7 C 1.37880 * 120.00148 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00501 * 179.97438 * 7 2 1 9 9 C 1.50708 * 119.99705 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.46961 * 179.97438 * 9 7 2 11 11 N 1.46497 * 109.46950 * 179.97438 * 10 9 7 12 12 C 1.34780 * 119.99939 * 180.02562 * 11 10 9 13 13 O 1.21286 * 119.99613 * 359.97438 * 12 11 10 14 14 C 1.50700 * 120.00160 * 180.02562 * 12 11 10 15 15 C 1.50697 * 109.46933 * 179.97438 * 14 12 11 16 16 C 1.38286 * 120.01378 * 270.01861 * 15 14 12 17 17 C 1.37965 * 119.96674 * 180.02562 * 16 15 14 18 18 C 1.39151 * 120.21192 * 0.04617 * 17 16 15 19 19 C 1.38369 * 119.69228 * 359.81552 * 18 17 16 20 20 C 1.38106 * 120.00599 * 90.00064 * 15 14 12 21 21 C 1.50770 * 121.41162 * 180.31142 * 19 18 17 22 22 C 1.53075 * 109.68771 * 342.21296 * 21 19 18 23 23 C 1.53407 * 108.29127 * 48.18900 * 22 21 19 24 24 O 1.35844 * 118.50197 * 179.75921 * 18 17 16 25 25 H 0.97001 * 120.00538 * 359.97438 * 1 2 3 26 26 H 1.08999 * 109.47371 * 59.99771 * 9 7 2 27 27 H 1.09002 * 109.46838 * 299.99352 * 9 7 2 28 28 H 1.08999 * 109.47250 * 59.99716 * 10 9 7 29 29 H 1.09006 * 109.46891 * 299.99880 * 10 9 7 30 30 H 0.96996 * 120.00024 * 359.97438 * 11 10 9 31 31 H 1.09000 * 109.46891 * 59.99300 * 14 12 11 32 32 H 1.09002 * 109.46783 * 299.99441 * 14 12 11 33 33 H 1.08005 * 120.01819 * 0.06473 * 16 15 14 34 34 H 1.08000 * 119.89633 * 179.97438 * 17 16 15 35 35 H 1.07998 * 119.84627 * 0.02562 * 20 15 14 36 36 H 1.08998 * 109.44213 * 102.25510 * 21 19 18 37 37 H 1.09001 * 109.44083 * 222.14299 * 21 19 18 38 38 H 1.08997 * 109.66773 * 288.50700 * 22 21 19 39 39 H 1.08997 * 109.72892 * 167.90601 * 22 21 19 40 40 H 1.09002 * 109.68065 * 175.58527 * 23 22 21 41 41 H 1.08999 * 109.68092 * 55.07058 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5466 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 7 1.5127 -4.9308 0.0012 12 6 2.1866 -6.0981 0.0018 13 8 3.3994 -6.0980 0.0014 14 6 1.4331 -7.4032 0.0018 15 6 2.4124 -8.5485 0.0020 16 6 2.8623 -9.0741 -1.1954 17 6 3.7584 -10.1231 -1.1942 18 6 4.2113 -10.6557 0.0090 19 6 3.7617 -10.1258 1.2055 20 6 2.8612 -9.0734 1.1980 21 6 4.2321 -10.6683 2.5312 22 6 4.8430 -12.0577 2.3324 23 6 5.8261 -11.9877 1.1568 24 8 5.0896 -11.6913 -0.0303 25 1 -0.4851 0.8400 0.0004 26 1 0.6246 -2.5572 -0.8896 27 1 0.6240 -2.5567 0.8904 28 1 2.8719 -3.6044 0.8905 29 1 2.8719 -3.6044 -0.8895 30 1 0.5427 -4.9308 0.0019 31 1 0.8067 -7.4611 -0.8884 32 1 0.8061 -7.4606 0.8916 33 1 2.5127 -8.6632 -2.1311 34 1 4.1087 -10.5329 -2.1300 35 1 2.5083 -8.6614 2.1318 36 1 4.9831 -9.9991 2.9511 37 1 3.3864 -10.7384 3.2153 38 1 4.0546 -12.7767 2.1097 39 1 5.3720 -12.3599 3.2362 40 1 6.3331 -12.9461 1.0446 41 1 6.5605 -11.2031 1.3387 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000574086425.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:57 Heat of formation + Delta-G solvation = -96.572862 kcal Electronic energy + Delta-G solvation = -21759.466266 eV Core-core repulsion = 18409.434070 eV Total energy + Delta-G solvation = -3350.032196 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.66740 -40.62618 -38.54924 -36.53606 -35.23308 -34.79813 -33.39272 -31.55840 -31.36161 -28.76183 -26.75933 -26.16834 -24.26268 -23.47017 -22.81727 -21.58494 -20.37351 -18.72379 -18.59423 -17.89104 -17.68405 -17.01363 -16.50036 -16.47815 -16.30336 -15.63101 -15.37292 -15.10403 -14.87438 -14.71848 -14.59231 -14.30630 -14.17666 -13.98989 -13.27777 -13.21515 -13.03522 -12.83502 -12.59772 -12.48503 -12.25641 -12.20089 -11.87247 -11.68350 -11.62549 -11.46108 -11.34363 -10.80283 -10.60685 -9.97389 -9.71386 -9.00410 -8.24603 -6.34949 0.37893 0.41089 1.41289 1.41543 1.53066 1.73320 2.25468 2.38353 2.48764 2.86615 3.09997 3.65217 3.72587 3.81336 3.85569 3.96216 4.11220 4.22901 4.31747 4.43359 4.46805 4.50534 4.55579 4.61575 4.65704 4.70088 4.73798 4.86409 4.92259 5.05277 5.09468 5.17443 5.28548 5.32928 5.46577 5.51655 5.59065 5.65584 5.79393 5.85019 6.16657 6.50684 6.70285 6.78390 7.34328 7.36544 8.87088 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.035674 B = 0.002459 C = 0.002424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.689617 B =11384.789465 C =11550.595037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.008 3.992 3 Si 0.964 3.036 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.267 1.267 7 C -0.548 4.548 8 H 0.056 0.944 9 C 0.023 3.977 10 C 0.141 3.859 11 N -0.719 5.719 12 C 0.505 3.495 13 O -0.588 6.588 14 C -0.088 4.088 15 C -0.106 4.106 16 C -0.084 4.084 17 C -0.163 4.163 18 C 0.112 3.888 19 C -0.170 4.170 20 C -0.083 4.083 21 C -0.081 4.081 22 C -0.152 4.152 23 C 0.050 3.950 24 O -0.334 6.334 25 H 0.266 0.734 26 H 0.009 0.991 27 H 0.010 0.990 28 H 0.042 0.958 29 H 0.042 0.958 30 H 0.412 0.588 31 H 0.129 0.871 32 H 0.129 0.871 33 H 0.140 0.860 34 H 0.137 0.863 35 H 0.134 0.866 36 H 0.078 0.922 37 H 0.094 0.906 38 H 0.075 0.925 39 H 0.110 0.890 40 H 0.131 0.869 41 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.536 -25.952 3.600 26.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.191 4.191 3 Si 0.788 3.212 4 H -0.198 1.198 5 H -0.204 1.204 6 H -0.192 1.192 7 C -0.587 4.587 8 H 0.075 0.925 9 C -0.014 4.014 10 C 0.017 3.983 11 N -0.371 5.371 12 C 0.293 3.707 13 O -0.468 6.468 14 C -0.127 4.127 15 C -0.107 4.107 16 C -0.102 4.102 17 C -0.181 4.181 18 C 0.067 3.933 19 C -0.171 4.171 20 C -0.101 4.101 21 C -0.118 4.118 22 C -0.190 4.190 23 C -0.025 4.025 24 O -0.249 6.249 25 H 0.075 0.925 26 H 0.028 0.972 27 H 0.028 0.972 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.248 0.752 31 H 0.147 0.853 32 H 0.147 0.853 33 H 0.157 0.843 34 H 0.155 0.845 35 H 0.152 0.848 36 H 0.096 0.904 37 H 0.113 0.887 38 H 0.094 0.906 39 H 0.129 0.871 40 H 0.149 0.851 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 5.294 -25.956 3.455 26.715 hybrid contribution -0.070 1.323 0.048 1.326 sum 5.224 -24.633 3.503 25.423 Atomic orbital electron populations 1.70046 1.07468 1.28010 1.50971 1.25857 0.95811 1.03035 0.94424 0.85464 0.78619 0.78551 0.78535 1.19760 1.20396 1.19194 1.21479 0.93512 0.92093 1.51577 0.92543 1.19130 0.94202 0.91673 0.96415 1.21164 0.95018 0.82644 0.99437 1.46164 1.11152 1.05454 1.74283 1.21332 0.87993 0.86286 0.75091 1.90679 1.16227 1.88377 1.51547 1.20664 0.97098 0.87129 1.07837 1.19383 1.00316 0.97376 0.93586 1.21003 0.95902 0.94860 0.98392 1.20755 1.01625 0.98856 0.96873 1.18862 0.91698 0.88995 0.93760 1.20074 1.01680 1.00084 0.95270 1.20984 0.96031 0.94853 0.98191 1.20566 1.01762 0.96651 0.92807 1.22218 0.99830 0.96850 1.00061 1.23269 0.93044 1.03103 0.83048 1.85946 1.52670 1.46953 1.39299 0.92507 0.97224 0.97184 0.93968 0.93960 0.75162 0.85255 0.85343 0.84269 0.84468 0.84850 0.90374 0.88726 0.90646 0.87130 0.85105 0.92000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.13 13.29 21.45 0.28 -53.85 16 2 C 0.01 0.43 5.46 84.66 0.46 0.89 16 3 Si 0.96 43.73 29.54 68.60 2.03 45.75 16 4 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 5 H -0.28 -12.24 7.11 99.48 0.71 -11.54 16 6 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 7 C -0.55 -30.81 9.11 25.60 0.23 -30.57 16 8 H 0.06 3.12 7.74 -2.91 -0.02 3.10 16 9 C 0.02 1.17 5.09 29.85 0.15 1.32 16 10 C 0.14 6.11 5.61 86.38 0.48 6.60 16 11 N -0.72 -24.19 5.56 -463.05 -2.57 -26.76 16 12 C 0.50 16.38 7.82 87.66 0.69 17.06 16 13 O -0.59 -24.64 16.03 -3.05 -0.05 -24.69 16 14 C -0.09 -1.89 5.83 29.10 0.17 -1.72 16 15 C -0.11 -2.63 4.37 -19.89 -0.09 -2.72 16 16 C -0.08 -2.05 9.70 22.22 0.22 -1.84 16 17 C -0.16 -4.06 9.94 22.42 0.22 -3.84 16 18 C 0.11 2.81 6.47 22.52 0.15 2.96 16 19 C -0.17 -3.97 5.75 -19.75 -0.11 -4.08 16 20 C -0.08 -1.99 9.32 22.30 0.21 -1.78 16 21 C -0.08 -1.32 5.86 29.90 0.18 -1.15 16 22 C -0.15 -1.86 6.20 30.76 0.19 -1.67 16 23 C 0.05 0.73 7.02 72.12 0.51 1.24 16 24 O -0.33 -7.60 10.27 -91.79 -0.94 -8.55 16 25 H 0.27 14.61 8.31 -92.71 -0.77 13.84 16 26 H 0.01 0.49 8.14 -2.39 -0.02 0.48 16 27 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 28 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 29 H 0.04 1.93 8.14 -2.38 -0.02 1.91 16 30 H 0.41 11.43 8.47 -92.71 -0.79 10.64 16 31 H 0.13 2.06 8.09 -2.39 -0.02 2.04 16 32 H 0.13 2.04 8.09 -2.39 -0.02 2.02 16 33 H 0.14 2.90 8.06 -2.91 -0.02 2.88 16 34 H 0.14 2.99 8.06 -2.91 -0.02 2.96 16 35 H 0.13 2.77 8.06 -2.91 -0.02 2.74 16 36 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 37 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 38 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 39 H 0.11 0.76 8.14 -2.39 -0.02 0.74 16 40 H 0.13 1.18 8.14 -2.39 -0.02 1.16 16 41 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 Total: -1.00 -72.70 345.84 2.64 -70.06 By element: Atomic # 1 Polarization: 17.10 SS G_CDS: 0.24 Total: 17.34 kcal Atomic # 6 Polarization: -22.96 SS G_CDS: 3.65 Total: -19.30 kcal Atomic # 7 Polarization: -78.32 SS G_CDS: -2.29 Total: -80.61 kcal Atomic # 8 Polarization: -32.25 SS G_CDS: -0.99 Total: -33.24 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.75 kcal Total: -72.70 2.64 -70.06 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000574086425.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.512 kcal (2) G-P(sol) polarization free energy of solvation -72.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds