Wall clock time and date at job start Tue Mar 31 2020 06:31:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30527 * 125.71530 * 2 1 4 4 C 1.34123 * 109.34749 * 180.02562 * 3 2 1 5 5 C 1.34667 * 108.18335 * 359.73280 * 4 3 2 6 6 N 1.35809 * 125.71491 * 180.02562 * 2 1 3 7 7 C 1.40319 * 126.47057 * 359.96205 * 6 2 1 8 8 C 1.38770 * 120.07397 * 244.96155 * 7 6 2 9 9 C 1.38146 * 119.95461 * 179.97438 * 8 7 6 10 10 C 1.38282 * 120.11533 * 0.05804 * 9 8 7 11 11 C 1.50692 * 119.93074 * 180.02562 * 10 9 8 12 12 N 1.46903 * 109.46825 * 269.97998 * 11 10 9 13 13 C 1.46903 * 111.00063 * 179.97438 * 12 11 10 14 14 C 1.50695 * 109.47465 * 179.97438 * 13 12 11 15 15 H 1.08006 * 119.99948 * 359.97438 * 14 13 12 16 16 C 1.37878 * 120.00216 * 180.02562 * 14 13 12 17 17 N 1.31509 * 120.00127 * 359.97438 * 16 14 13 18 18 Si 1.86796 * 119.99894 * 180.02562 * 16 14 13 19 19 H 1.48495 * 109.47828 * 89.99506 * 18 16 14 20 20 H 1.48502 * 109.47055 * 209.99744 * 18 16 14 21 21 H 1.48508 * 109.47203 * 329.99127 * 18 16 14 22 22 C 1.38247 * 120.14541 * 359.97438 * 10 9 8 23 23 C 1.38335 * 120.04131 * 359.97438 * 22 10 9 24 24 F 1.35101 * 120.05819 * 179.74688 * 23 22 10 25 25 H 1.08999 * 109.47440 * 269.96038 * 1 2 3 26 26 H 1.09005 * 109.47206 * 29.95350 * 1 2 3 27 27 H 1.08994 * 109.47052 * 149.95464 * 1 2 3 28 28 H 1.07997 * 125.90546 * 180.02562 * 4 3 2 29 29 H 1.08002 * 126.57961 * 180.26469 * 5 4 3 30 30 H 1.07995 * 120.02566 * 359.97438 * 8 7 6 31 31 H 1.08003 * 119.94137 * 180.02562 * 9 8 7 32 32 H 1.09001 * 109.47176 * 29.97575 * 11 10 9 33 33 H 1.08996 * 109.47656 * 149.97549 * 11 10 9 34 34 H 1.00899 * 111.00607 * 56.04669 * 12 11 10 35 35 H 1.08997 * 109.47291 * 300.00308 * 13 12 11 36 36 H 1.09001 * 109.46777 * 59.99673 * 13 12 11 37 37 H 0.97001 * 120.00663 * 179.97438 * 17 16 14 38 38 H 1.08002 * 119.98404 * 179.97438 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2689 1.0598 0.0000 4 6 3.5558 0.6818 -0.0006 5 6 3.5985 -0.6642 0.0050 6 7 2.2998 -1.1027 -0.0005 7 6 1.8705 -2.4386 -0.0003 8 6 2.1422 -3.2562 1.0875 9 6 1.7179 -4.5709 1.0853 10 6 1.0239 -5.0741 0.0003 11 6 0.5625 -6.5087 0.0025 12 7 1.6071 -7.3598 -0.5828 13 6 1.1916 -8.7688 -0.5967 14 6 2.2856 -9.6092 -1.2032 15 1 3.1982 -9.1432 -1.5447 16 6 2.1212 -10.9729 -1.3233 17 7 1.0099 -11.5403 -0.9080 18 14 3.4776 -12.0146 -2.0744 19 1 4.4017 -12.4703 -1.0051 20 1 2.8795 -13.1952 -2.7481 21 1 4.2300 -11.2065 -3.0676 22 6 0.7514 -4.2637 -1.0861 23 6 1.1723 -2.9460 -1.0900 24 9 0.9106 -2.1552 -2.1537 25 1 -0.3634 -0.0007 1.0276 26 1 -0.3634 0.8904 -0.5131 27 1 -0.3633 -0.8895 -0.5145 28 1 4.4100 1.3427 -0.0003 29 1 4.4857 -1.2800 0.0101 30 1 2.6849 -2.8651 1.9353 31 1 1.9292 -5.2069 1.9322 32 1 0.3671 -6.8259 1.0268 33 1 -0.3507 -6.5977 -0.5859 34 1 2.4823 -7.2461 -0.0939 35 1 1.0008 -9.1014 0.4235 36 1 0.2826 -8.8737 -1.1891 37 1 0.8940 -12.4996 -0.9927 38 1 0.2094 -4.6596 -1.9323 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000574785177.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:46 Heat of formation + Delta-G solvation = 23.927023 kcal Electronic energy + Delta-G solvation = -21691.084799 eV Core-core repulsion = 18255.110317 eV Total energy + Delta-G solvation = -3435.974482 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.129 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -50.18364 -43.27152 -40.39258 -37.24282 -35.36470 -34.26998 -32.77624 -31.89191 -31.28902 -28.75404 -27.87565 -26.08050 -24.20489 -23.68913 -22.92111 -22.19946 -21.16215 -19.13867 -18.70837 -18.04009 -17.88724 -16.97106 -16.79382 -16.32734 -16.13200 -15.66035 -15.36248 -15.27351 -15.06013 -14.90056 -14.76970 -14.23253 -14.05861 -13.68642 -13.50615 -13.37368 -13.27284 -13.07992 -12.98654 -12.72319 -12.57113 -12.32869 -11.95091 -11.33670 -11.27814 -11.04947 -10.66191 -10.10561 -9.83982 -9.39894 -9.13903 -8.22741 -6.33166 -0.32047 -0.00252 0.93256 1.42273 1.43545 1.54908 1.57549 2.04450 2.25081 2.41239 2.89414 3.11459 3.45597 3.47185 3.58323 3.70633 3.86520 4.02170 4.10613 4.33914 4.37140 4.42579 4.50904 4.57936 4.72505 4.72550 4.76342 4.88802 4.91979 4.96481 5.08824 5.17758 5.27426 5.38624 5.53206 5.61014 5.73040 6.01229 6.19614 6.40217 6.69176 6.88248 6.97717 7.37834 8.88474 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.032266 B = 0.002861 C = 0.002795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.567591 B = 9783.825268 C =10015.985789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.203 3.797 3 N -0.518 5.518 4 C -0.040 4.040 5 C -0.051 4.051 6 N -0.417 5.417 7 C 0.064 3.936 8 C -0.067 4.067 9 C -0.100 4.100 10 C -0.031 4.031 11 C 0.092 3.908 12 N -0.685 5.685 13 C 0.208 3.792 14 C -0.535 4.535 15 H 0.064 0.936 16 C 0.003 3.997 17 N -0.933 5.933 18 Si 0.969 3.031 19 H -0.271 1.271 20 H -0.284 1.284 21 H -0.266 1.266 22 C -0.123 4.123 23 C 0.098 3.902 24 F -0.140 7.140 25 H 0.097 0.903 26 H 0.098 0.902 27 H 0.071 0.929 28 H 0.195 0.805 29 H 0.201 0.799 30 H 0.161 0.839 31 H 0.160 0.840 32 H 0.049 0.951 33 H 0.076 0.924 34 H 0.338 0.662 35 H -0.031 1.031 36 H 0.003 0.997 37 H 0.265 0.735 38 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.432 20.077 5.500 20.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.058 4.058 3 N -0.238 5.238 4 C -0.186 4.186 5 C -0.181 4.181 6 N -0.098 5.098 7 C -0.027 4.027 8 C -0.086 4.086 9 C -0.119 4.119 10 C -0.032 4.032 11 C -0.037 4.037 12 N -0.316 5.316 13 C 0.080 3.920 14 C -0.574 4.574 15 H 0.082 0.918 16 C -0.195 4.195 17 N -0.573 5.573 18 Si 0.793 3.207 19 H -0.196 1.196 20 H -0.209 1.209 21 H -0.191 1.191 22 C -0.143 4.143 23 C 0.077 3.923 24 F -0.118 7.118 25 H 0.115 0.885 26 H 0.117 0.883 27 H 0.089 0.911 28 H 0.212 0.788 29 H 0.218 0.782 30 H 0.179 0.821 31 H 0.178 0.822 32 H 0.067 0.933 33 H 0.094 0.906 34 H 0.156 0.844 35 H -0.013 1.013 36 H 0.022 0.978 37 H 0.074 0.926 38 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 0.827 20.765 4.811 21.331 hybrid contribution 0.760 -1.674 0.123 1.843 sum 1.587 19.090 4.934 19.781 Atomic orbital electron populations 1.20312 0.83439 1.04390 1.04621 1.24128 0.96782 0.80653 1.04207 1.70252 1.03490 1.28613 1.21407 1.22770 0.94834 0.93428 1.07576 1.23316 0.86954 0.97021 1.10812 1.42939 1.07279 1.04221 1.55399 1.17735 1.04975 0.83887 0.96117 1.21181 0.98427 0.92902 0.96095 1.21303 0.96739 0.94869 0.98990 1.19831 0.95461 0.94881 0.93000 1.20943 0.95722 0.88185 0.98820 1.60596 1.05191 1.07792 1.57993 1.19228 0.95528 0.83701 0.93496 1.21539 1.03073 0.92381 1.40373 0.91826 1.25884 0.98250 0.99387 0.95979 1.70065 1.27371 1.11489 1.48357 0.85391 0.78759 0.77832 0.78681 1.19640 1.20915 1.19067 1.21057 1.02149 0.90618 1.00488 1.17719 1.01323 0.89378 0.83854 1.91504 1.92216 1.73725 1.54394 0.88465 0.88339 0.91060 0.78774 0.78203 0.82129 0.82232 0.93338 0.90592 0.84426 1.01292 0.97845 0.92607 0.83584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.28 10.18 71.24 0.73 -0.55 16 2 C 0.20 4.95 7.66 137.87 1.06 6.01 16 3 N -0.52 -13.80 11.25 -187.57 -2.11 -15.91 16 4 C -0.04 -0.88 11.86 83.52 0.99 0.11 16 5 C -0.05 -1.04 11.48 83.05 0.95 -0.09 16 6 N -0.42 -9.55 2.67 -336.74 -0.90 -10.45 16 7 C 0.06 1.40 5.45 38.09 0.21 1.61 16 8 C -0.07 -1.18 9.91 22.38 0.22 -0.95 16 9 C -0.10 -1.86 9.69 22.26 0.22 -1.64 16 10 C -0.03 -0.73 5.39 -19.85 -0.11 -0.84 16 11 C 0.09 2.71 5.81 85.55 0.50 3.21 16 12 N -0.68 -26.33 6.48 -522.00 -3.38 -29.72 16 13 C 0.21 10.37 5.44 85.55 0.47 10.83 16 14 C -0.54 -29.18 9.32 25.60 0.24 -28.94 16 15 H 0.06 3.38 7.81 -2.91 -0.02 3.36 16 16 C 0.00 0.19 5.46 84.66 0.46 0.65 16 17 N -0.93 -54.48 13.29 21.45 0.28 -54.19 16 18 Si 0.97 42.92 29.54 68.60 2.03 44.95 16 19 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 20 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 21 H -0.27 -11.43 7.11 99.48 0.71 -10.73 16 22 C -0.12 -2.98 9.67 22.29 0.22 -2.77 16 23 C 0.10 2.36 6.41 22.48 0.14 2.51 16 24 F -0.14 -3.76 16.14 44.97 0.73 -3.03 16 25 H 0.10 1.44 8.14 -2.39 -0.02 1.43 16 26 H 0.10 1.65 8.14 -2.38 -0.02 1.63 16 27 H 0.07 1.33 6.30 -2.39 -0.02 1.31 16 28 H 0.20 3.04 8.06 -2.91 -0.02 3.02 16 29 H 0.20 2.86 8.06 -2.91 -0.02 2.83 16 30 H 0.16 2.10 8.06 -2.91 -0.02 2.08 16 31 H 0.16 2.34 8.06 -2.91 -0.02 2.32 16 32 H 0.05 1.35 8.08 -2.39 -0.02 1.33 16 33 H 0.08 2.30 8.08 -2.39 -0.02 2.28 16 34 H 0.34 12.17 8.71 -89.69 -0.78 11.38 16 35 H -0.03 -1.62 8.14 -2.39 -0.02 -1.64 16 36 H 0.00 0.19 8.14 -2.39 -0.02 0.17 16 37 H 0.27 14.57 8.31 -92.71 -0.77 13.80 16 38 H 0.15 3.52 8.06 -2.91 -0.02 3.50 16 Total: -1.00 -66.86 334.57 3.23 -63.63 By element: Atomic # 1 Polarization: 15.28 SS G_CDS: 0.30 Total: 15.58 kcal Atomic # 6 Polarization: -17.15 SS G_CDS: 6.29 Total: -10.86 kcal Atomic # 7 Polarization: -104.16 SS G_CDS: -6.11 Total: -110.26 kcal Atomic # 9 Polarization: -3.76 SS G_CDS: 0.73 Total: -3.03 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 2.03 Total: 44.95 kcal Total: -66.86 3.23 -63.63 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000574785177.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.560 kcal (2) G-P(sol) polarization free energy of solvation -66.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.633 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds