Wall clock time and date at job start Tue Mar 31 2020 06:28:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86801 * 120.00146 * 2 1 4 4 H 1.48494 * 109.47209 * 270.00440 * 3 2 1 5 5 H 1.48507 * 109.46730 * 30.00151 * 3 2 1 6 6 H 1.48500 * 109.47294 * 149.99875 * 3 2 1 7 7 C 1.37876 * 119.99984 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00303 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00111 * 359.97438 * 7 2 1 10 10 N 1.46906 * 109.47183 * 180.02562 * 9 7 2 11 11 C 1.46901 * 110.99793 * 180.02562 * 10 9 7 12 12 C 1.53000 * 109.46769 * 180.02562 * 11 10 9 13 13 C 1.50703 * 109.46912 * 179.97438 * 12 11 10 14 14 C 1.39909 * 125.87956 * 124.99586 * 13 12 11 15 15 C 1.35329 * 107.93353 * 180.02562 * 14 13 12 16 16 N 1.35208 * 107.71527 * 359.97438 * 15 14 13 17 17 C 1.40243 * 126.05701 * 180.02562 * 16 15 14 18 18 C 1.38833 * 120.03770 * 359.72602 * 17 16 15 19 19 C 1.38107 * 119.95594 * 179.74251 * 18 17 16 20 20 C 1.38478 * 120.03911 * 0.53121 * 19 18 17 21 21 F 1.35102 * 119.95400 * 179.74290 * 20 19 18 22 22 C 1.38478 * 120.08673 * 359.72343 * 20 19 18 23 23 C 1.38106 * 120.03863 * 0.02562 * 22 20 19 24 24 N 1.30886 * 125.88152 * 304.69250 * 13 12 11 25 25 H 0.97003 * 120.00204 * 359.97438 * 1 2 3 26 26 H 1.08995 * 109.46796 * 60.00364 * 9 7 2 27 27 H 1.09002 * 109.47497 * 300.00158 * 9 7 2 28 28 H 1.00898 * 110.99995 * 303.95361 * 10 9 7 29 29 H 1.09002 * 109.47401 * 59.99808 * 11 10 9 30 30 H 1.09001 * 109.46874 * 299.99821 * 11 10 9 31 31 H 1.09001 * 109.47194 * 299.99524 * 12 11 10 32 32 H 1.08992 * 109.47399 * 59.99697 * 12 11 10 33 33 H 1.08000 * 126.03333 * 0.02710 * 14 13 12 34 34 H 1.08001 * 126.14167 * 180.02562 * 15 14 13 35 35 H 1.08004 * 120.01769 * 359.97438 * 18 17 16 36 36 H 1.07997 * 119.97703 * 180.23555 * 19 18 17 37 37 H 1.08003 * 119.98277 * 179.97438 * 22 20 19 38 38 H 1.08000 * 120.02019 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 7 2.2057 -3.6157 -0.0005 11 6 1.5053 -4.9071 -0.0011 12 6 2.5303 -6.0430 -0.0005 13 6 1.8118 -7.3678 -0.0005 14 6 1.9928 -8.3987 -0.9288 15 6 1.1683 -9.4162 -0.5877 16 7 0.4889 -9.0416 0.5197 17 6 -0.4686 -9.8082 1.1995 18 6 -0.7978 -11.0761 0.7396 19 6 -1.7371 -11.8318 1.4134 20 6 -2.3585 -11.3211 2.5406 21 9 -3.2810 -12.0598 3.1954 22 6 -2.0354 -10.0546 2.9978 23 6 -1.0927 -9.2980 2.3297 24 7 0.9152 -7.7542 0.8712 25 1 -0.4850 0.8400 0.0004 26 1 0.6241 -2.5567 -0.8903 27 1 0.6246 -2.5572 0.8897 28 1 2.8405 -3.5487 -0.7819 29 1 0.8807 -4.9813 -0.8913 30 1 0.8801 -4.9817 0.8886 31 1 3.1558 -5.9686 -0.8900 32 1 3.1545 -5.9687 0.8899 33 1 2.6709 -8.3850 -1.7693 34 1 1.0710 -10.3585 -1.1063 35 1 -0.3168 -11.4727 -0.1424 36 1 -1.9907 -12.8196 1.0581 37 1 -2.5213 -9.6578 3.8769 38 1 -0.8412 -8.3101 2.6862 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000584775540.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:13 Heat of formation + Delta-G solvation = 56.874684 kcal Electronic energy + Delta-G solvation = -20847.110167 eV Core-core repulsion = 17412.564403 eV Total energy + Delta-G solvation = -3434.545765 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.129 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -49.24376 -41.72630 -39.22753 -35.92009 -33.92893 -32.52595 -31.83018 -30.79840 -29.93646 -28.21406 -26.04630 -23.87961 -23.44277 -22.13105 -21.32599 -20.85642 -19.59525 -18.63934 -17.78624 -16.50524 -16.38461 -16.00871 -15.53078 -15.28026 -14.91412 -14.62720 -14.25278 -14.13720 -14.01169 -13.78391 -13.42355 -13.05653 -12.94051 -12.87027 -12.29472 -12.03675 -11.84361 -11.54733 -11.14072 -10.98088 -10.71761 -10.65322 -10.40575 -10.08504 -9.84393 -9.65979 -9.26537 -9.13585 -8.46022 -8.19258 -7.28394 -6.00637 -4.02711 0.35709 0.70758 1.86038 2.13798 2.64147 3.19446 3.33625 3.39529 3.44335 3.82125 4.07615 4.28576 4.40731 4.45482 4.49186 4.69705 4.81503 5.05460 5.19225 5.35136 5.39255 5.44978 5.48143 5.59077 5.61040 5.70584 5.73883 5.84513 5.91806 5.97549 6.25540 6.41357 6.50457 6.58521 6.91267 7.28789 7.45142 7.54175 7.80549 8.15126 8.41733 8.63623 9.06670 9.62050 11.10581 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.024401 B = 0.002458 C = 0.002271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.196982 B =11389.628771 C =12325.276899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.054 3.946 3 Si 0.900 3.100 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.514 4.514 8 H 0.063 0.937 9 C 0.194 3.806 10 N -0.690 5.690 11 C 0.067 3.933 12 C -0.040 4.040 13 C 0.101 3.899 14 C -0.251 4.251 15 C 0.047 3.953 16 N -0.331 5.331 17 C 0.162 3.838 18 C -0.118 4.118 19 C -0.125 4.125 20 C 0.082 3.918 21 F -0.138 7.138 22 C -0.125 4.125 23 C -0.092 4.092 24 N -0.281 5.281 25 H 0.261 0.739 26 H -0.014 1.014 27 H 0.028 0.972 28 H 0.328 0.672 29 H 0.018 0.982 30 H 0.070 0.930 31 H 0.082 0.918 32 H 0.091 0.909 33 H 0.155 0.845 34 H 0.176 0.824 35 H 0.140 0.860 36 H 0.144 0.856 37 H 0.146 0.854 38 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.259 -26.665 0.287 26.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.147 4.147 3 Si 0.727 3.273 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.197 1.197 7 C -0.552 4.552 8 H 0.081 0.919 9 C 0.067 3.933 10 N -0.321 5.321 11 C -0.064 4.064 12 C -0.079 4.079 13 C -0.068 4.068 14 C -0.279 4.279 15 C -0.095 4.095 16 N -0.106 5.106 17 C 0.068 3.932 18 C -0.139 4.139 19 C -0.145 4.145 20 C 0.062 3.938 21 F -0.116 7.116 22 C -0.144 4.144 23 C -0.112 4.112 24 N -0.100 5.100 25 H 0.071 0.929 26 H 0.004 0.996 27 H 0.046 0.954 28 H 0.144 0.856 29 H 0.036 0.964 30 H 0.088 0.912 31 H 0.101 0.899 32 H 0.109 0.891 33 H 0.173 0.827 34 H 0.193 0.807 35 H 0.157 0.843 36 H 0.162 0.838 37 H 0.163 0.837 38 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -2.067 -26.284 2.065 26.446 hybrid contribution 0.241 0.430 -1.631 1.704 sum -1.826 -25.854 0.434 25.922 Atomic orbital electron populations 1.69968 1.06113 1.26774 1.50938 1.25005 0.94881 0.99408 0.95386 0.86473 0.79795 0.82985 0.77997 1.20738 1.21263 1.19738 1.21196 0.93538 0.90221 1.50275 0.91885 1.19548 0.90589 0.87286 0.95830 1.60687 1.21330 1.01248 1.48803 1.21803 0.94805 0.89462 1.00347 1.20162 0.97181 0.86703 1.03903 1.22695 0.94564 0.97158 0.92335 1.21590 1.07049 0.94243 1.05007 1.22554 0.95455 1.01026 0.90420 1.45838 1.30737 1.12839 1.21207 1.17578 0.91140 0.90575 0.93867 1.20625 0.99555 0.92337 1.01420 1.20905 0.97387 1.01216 0.94976 1.17702 0.91520 0.90845 0.93717 1.91515 1.63620 1.76335 1.80171 1.21098 0.98868 0.92908 1.01573 1.20849 0.95403 1.01338 0.93628 1.77528 1.16871 0.92215 1.23388 0.92921 0.99609 0.95394 0.85595 0.96392 0.91190 0.89950 0.89064 0.82729 0.80656 0.84257 0.83790 0.83663 0.83134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.31 13.29 55.43 0.74 -26.58 16 2 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 3 Si 0.90 21.88 29.54 -169.99 -5.02 16.86 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.51 -14.77 9.32 -34.44 -0.32 -15.09 16 8 H 0.06 1.77 7.81 -52.49 -0.41 1.36 16 9 C 0.19 5.23 5.44 -4.97 -0.03 5.20 16 10 N -0.69 -15.02 6.49 -115.05 -0.75 -15.76 16 11 C 0.07 1.23 5.65 -3.82 -0.02 1.21 16 12 C -0.04 -0.57 6.05 -27.88 -0.17 -0.74 16 13 C 0.10 1.42 6.49 -82.37 -0.53 0.88 16 14 C -0.25 -2.81 10.72 -39.99 -0.43 -3.24 16 15 C 0.05 0.47 10.80 -17.10 -0.18 0.28 16 16 N -0.33 -4.11 3.80 -10.69 -0.04 -4.15 16 17 C 0.16 1.73 6.69 -83.57 -0.56 1.17 16 18 C -0.12 -0.92 9.45 -39.41 -0.37 -1.29 16 19 C -0.13 -0.91 10.02 -39.54 -0.40 -1.31 16 20 C 0.08 0.72 7.30 -39.40 -0.29 0.43 16 21 F -0.14 -1.29 17.27 2.25 0.04 -1.25 16 22 C -0.13 -1.11 10.02 -39.54 -0.40 -1.51 16 23 C -0.09 -0.97 9.66 -39.41 -0.38 -1.35 16 24 N -0.28 -4.26 11.84 33.69 0.40 -3.86 16 25 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 26 H -0.01 -0.40 8.14 -51.93 -0.42 -0.82 16 27 H 0.03 0.82 8.14 -51.93 -0.42 0.39 16 28 H 0.33 6.60 8.72 -39.29 -0.34 6.26 16 29 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.07 1.40 8.14 -51.93 -0.42 0.97 16 31 H 0.08 1.01 8.12 -51.93 -0.42 0.59 16 32 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 33 H 0.16 1.33 8.06 -52.49 -0.42 0.91 16 34 H 0.18 0.99 7.04 -52.49 -0.37 0.62 16 35 H 0.14 0.70 6.74 -52.48 -0.35 0.35 16 36 H 0.14 0.69 8.06 -52.49 -0.42 0.27 16 37 H 0.15 1.03 8.06 -52.48 -0.42 0.61 16 38 H 0.15 1.72 7.70 -52.49 -0.40 1.32 16 LS Contribution 335.93 15.07 5.06 5.06 Total: -1.00 -33.14 335.93 -8.57 -41.71 By element: Atomic # 1 Polarization: 6.68 SS G_CDS: -4.82 Total: 1.87 kcal Atomic # 6 Polarization: -9.71 SS G_CDS: -4.18 Total: -13.88 kcal Atomic # 7 Polarization: -50.70 SS G_CDS: 0.35 Total: -50.35 kcal Atomic # 9 Polarization: -1.29 SS G_CDS: 0.04 Total: -1.25 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -33.14 -8.57 -41.71 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584775540.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.581 kcal (2) G-P(sol) polarization free energy of solvation -33.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.706 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds