Wall clock time and date at job start Tue Mar 31 2020 06:28:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86801 * 120.00146 * 2 1 4 4 H 1.48494 * 109.47209 * 270.00440 * 3 2 1 5 5 H 1.48507 * 109.46730 * 30.00151 * 3 2 1 6 6 H 1.48500 * 109.47294 * 149.99875 * 3 2 1 7 7 C 1.37876 * 119.99984 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00303 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00111 * 359.97438 * 7 2 1 10 10 N 1.46906 * 109.47183 * 180.02562 * 9 7 2 11 11 C 1.46901 * 110.99793 * 180.02562 * 10 9 7 12 12 C 1.53000 * 109.46769 * 180.02562 * 11 10 9 13 13 C 1.50703 * 109.46912 * 179.97438 * 12 11 10 14 14 C 1.39909 * 125.87956 * 124.99586 * 13 12 11 15 15 C 1.35329 * 107.93353 * 180.02562 * 14 13 12 16 16 N 1.35208 * 107.71527 * 359.97438 * 15 14 13 17 17 C 1.40243 * 126.05701 * 180.02562 * 16 15 14 18 18 C 1.38833 * 120.03770 * 359.72602 * 17 16 15 19 19 C 1.38107 * 119.95594 * 179.74251 * 18 17 16 20 20 C 1.38478 * 120.03911 * 0.53121 * 19 18 17 21 21 F 1.35102 * 119.95400 * 179.74290 * 20 19 18 22 22 C 1.38478 * 120.08673 * 359.72343 * 20 19 18 23 23 C 1.38106 * 120.03863 * 0.02562 * 22 20 19 24 24 N 1.30886 * 125.88152 * 304.69250 * 13 12 11 25 25 H 0.97003 * 120.00204 * 359.97438 * 1 2 3 26 26 H 1.08995 * 109.46796 * 60.00364 * 9 7 2 27 27 H 1.09002 * 109.47497 * 300.00158 * 9 7 2 28 28 H 1.00898 * 110.99995 * 303.95361 * 10 9 7 29 29 H 1.09002 * 109.47401 * 59.99808 * 11 10 9 30 30 H 1.09001 * 109.46874 * 299.99821 * 11 10 9 31 31 H 1.09001 * 109.47194 * 299.99524 * 12 11 10 32 32 H 1.08992 * 109.47399 * 59.99697 * 12 11 10 33 33 H 1.08000 * 126.03333 * 0.02710 * 14 13 12 34 34 H 1.08001 * 126.14167 * 180.02562 * 15 14 13 35 35 H 1.08004 * 120.01769 * 359.97438 * 18 17 16 36 36 H 1.07997 * 119.97703 * 180.23555 * 19 18 17 37 37 H 1.08003 * 119.98277 * 179.97438 * 22 20 19 38 38 H 1.08000 * 120.02019 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 7 2.2057 -3.6157 -0.0005 11 6 1.5053 -4.9071 -0.0011 12 6 2.5303 -6.0430 -0.0005 13 6 1.8118 -7.3678 -0.0005 14 6 1.9928 -8.3987 -0.9288 15 6 1.1683 -9.4162 -0.5877 16 7 0.4889 -9.0416 0.5197 17 6 -0.4686 -9.8082 1.1995 18 6 -0.7978 -11.0761 0.7396 19 6 -1.7371 -11.8318 1.4134 20 6 -2.3585 -11.3211 2.5406 21 9 -3.2810 -12.0598 3.1954 22 6 -2.0354 -10.0546 2.9978 23 6 -1.0927 -9.2980 2.3297 24 7 0.9152 -7.7542 0.8712 25 1 -0.4850 0.8400 0.0004 26 1 0.6241 -2.5567 -0.8903 27 1 0.6246 -2.5572 0.8897 28 1 2.8405 -3.5487 -0.7819 29 1 0.8807 -4.9813 -0.8913 30 1 0.8801 -4.9817 0.8886 31 1 3.1558 -5.9686 -0.8900 32 1 3.1545 -5.9687 0.8899 33 1 2.6709 -8.3850 -1.7693 34 1 1.0710 -10.3585 -1.1063 35 1 -0.3168 -11.4727 -0.1424 36 1 -1.9907 -12.8196 1.0581 37 1 -2.5213 -9.6578 3.8769 38 1 -0.8412 -8.3101 2.6862 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000584775540.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:12 Heat of formation + Delta-G solvation = 35.930003 kcal Electronic energy + Delta-G solvation = -20848.018397 eV Core-core repulsion = 17412.564403 eV Total energy + Delta-G solvation = -3435.453994 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.129 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -49.95349 -42.58945 -39.94580 -37.57891 -35.28194 -34.30663 -32.50966 -32.02919 -30.92088 -29.40787 -27.81197 -24.79783 -24.50253 -23.54442 -22.95209 -21.74082 -20.60222 -19.37454 -18.55826 -18.51343 -17.21436 -16.92845 -16.72467 -16.59669 -16.12362 -15.97760 -15.37790 -15.24200 -14.88129 -14.73267 -14.44803 -14.35099 -14.06089 -13.83906 -13.75953 -13.44964 -13.35018 -12.89031 -12.64204 -12.47423 -12.35910 -12.12843 -11.96988 -11.50650 -11.31518 -10.94819 -10.67094 -10.31143 -10.11055 -9.17984 -9.00113 -8.23072 -6.35184 -0.38005 0.05507 1.05181 1.33822 1.41859 1.44427 1.56335 1.72263 2.40503 2.49310 3.10195 3.15173 3.29827 3.46859 3.67616 3.74650 3.88055 4.02618 4.12842 4.16207 4.36300 4.43109 4.56470 4.67793 4.72019 4.79471 4.88000 4.95018 5.00427 5.02298 5.04919 5.12061 5.22096 5.26103 5.55018 5.60661 5.66091 5.99432 6.16499 6.40266 6.62399 6.71315 6.89284 7.36128 8.89061 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.024401 B = 0.002458 C = 0.002271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.196982 B =11389.628771 C =12325.276899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.003 4.003 3 Si 0.979 3.021 4 H -0.269 1.269 5 H -0.283 1.283 6 H -0.262 1.262 7 C -0.535 4.535 8 H 0.070 0.930 9 C 0.208 3.792 10 N -0.686 5.686 11 C 0.074 3.926 12 C -0.025 4.025 13 C 0.080 3.920 14 C -0.261 4.261 15 C 0.058 3.942 16 N -0.336 5.336 17 C 0.135 3.865 18 C -0.104 4.104 19 C -0.114 4.114 20 C 0.074 3.926 21 F -0.142 7.142 22 C -0.129 4.129 23 C -0.113 4.113 24 N -0.330 5.330 25 H 0.265 0.735 26 H -0.040 1.040 27 H -0.007 1.007 28 H 0.341 0.659 29 H 0.011 0.989 30 H 0.045 0.955 31 H 0.109 0.891 32 H 0.087 0.913 33 H 0.182 0.818 34 H 0.225 0.775 35 H 0.176 0.824 36 H 0.177 0.823 37 H 0.154 0.846 38 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.013 -28.589 -1.201 28.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.201 4.201 3 Si 0.802 3.198 4 H -0.194 1.194 5 H -0.209 1.209 6 H -0.186 1.186 7 C -0.573 4.573 8 H 0.088 0.912 9 C 0.080 3.920 10 N -0.317 5.317 11 C -0.056 4.056 12 C -0.065 4.065 13 C -0.088 4.088 14 C -0.289 4.289 15 C -0.083 4.083 16 N -0.112 5.112 17 C 0.043 3.957 18 C -0.124 4.124 19 C -0.133 4.133 20 C 0.054 3.946 21 F -0.120 7.120 22 C -0.149 4.149 23 C -0.133 4.133 24 N -0.151 5.151 25 H 0.074 0.926 26 H -0.023 1.023 27 H 0.012 0.988 28 H 0.159 0.841 29 H 0.029 0.971 30 H 0.063 0.937 31 H 0.127 0.873 32 H 0.106 0.894 33 H 0.199 0.801 34 H 0.242 0.758 35 H 0.193 0.807 36 H 0.195 0.805 37 H 0.172 0.828 38 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -0.780 -28.232 0.578 28.249 hybrid contribution -0.259 0.891 -1.127 1.460 sum -1.038 -27.341 -0.549 27.366 Atomic orbital electron populations 1.70113 1.08028 1.28087 1.51553 1.26048 0.95821 1.03718 0.94495 0.85247 0.78437 0.77490 0.78599 1.19412 1.20854 1.18633 1.21559 0.94008 0.91141 1.50614 0.91198 1.19199 0.90703 0.89172 0.92942 1.60533 1.20484 1.01203 1.49478 1.21736 0.95697 0.89435 0.98775 1.19974 0.95990 0.85491 1.05028 1.22713 0.94975 0.97571 0.93515 1.21923 1.08095 0.93571 1.05312 1.23353 0.93578 1.02294 0.89064 1.45989 1.31089 1.12112 1.21971 1.17956 0.91624 0.91831 0.94310 1.20983 0.98854 0.90624 1.01977 1.21278 0.96092 1.02258 0.93710 1.17894 0.91650 0.90666 0.94348 1.91508 1.63827 1.76301 1.80402 1.21167 0.98577 0.93261 1.01854 1.20773 0.96766 1.00958 0.94782 1.77446 1.18217 0.94411 1.25019 0.92600 1.02259 0.98843 0.84136 0.97054 0.93665 0.87272 0.89433 0.80102 0.75828 0.80693 0.80544 0.82836 0.85393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.32 13.29 21.45 0.28 -58.03 16 2 C 0.00 -0.17 5.46 84.65 0.46 0.29 16 3 Si 0.98 44.88 29.54 68.60 2.03 46.91 16 4 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 5 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 6 H -0.26 -11.51 7.11 99.48 0.71 -10.80 16 7 C -0.54 -31.29 9.32 25.60 0.24 -31.05 16 8 H 0.07 3.90 7.81 -2.91 -0.02 3.88 16 9 C 0.21 11.70 5.44 85.56 0.47 12.17 16 10 N -0.69 -30.68 6.49 -517.91 -3.36 -34.04 16 11 C 0.07 2.85 5.65 86.30 0.49 3.34 16 12 C -0.03 -0.73 6.05 29.85 0.18 -0.55 16 13 C 0.08 2.23 6.49 43.11 0.28 2.51 16 14 C -0.26 -5.30 10.72 22.00 0.24 -5.06 16 15 C 0.06 1.00 10.80 83.50 0.90 1.90 16 16 N -0.34 -8.09 3.80 -187.73 -0.71 -8.80 16 17 C 0.14 2.78 6.69 38.08 0.25 3.04 16 18 C -0.10 -1.28 9.45 22.38 0.21 -1.07 16 19 C -0.11 -1.31 10.02 22.30 0.22 -1.08 16 20 C 0.07 1.20 7.30 22.38 0.16 1.36 16 21 F -0.14 -2.47 17.27 44.97 0.78 -1.69 16 22 C -0.13 -2.35 10.02 22.30 0.22 -2.13 16 23 C -0.11 -2.51 9.66 22.38 0.22 -2.29 16 24 N -0.33 -10.37 11.84 -47.33 -0.56 -10.93 16 25 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 26 H -0.04 -2.43 8.14 -2.39 -0.02 -2.45 16 27 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 28 H 0.34 13.75 8.72 -89.70 -0.78 12.97 16 29 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 30 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 31 H 0.11 2.52 8.12 -2.39 -0.02 2.50 16 32 H 0.09 2.56 8.14 -2.39 -0.02 2.54 16 33 H 0.18 2.52 8.06 -2.91 -0.02 2.50 16 34 H 0.23 1.34 7.04 -2.91 -0.02 1.32 16 35 H 0.18 0.83 6.74 -2.91 -0.02 0.81 16 36 H 0.18 0.88 8.06 -2.91 -0.02 0.86 16 37 H 0.15 2.33 8.06 -2.91 -0.02 2.31 16 38 H 0.13 3.34 7.70 -2.91 -0.02 3.32 16 Total: -1.00 -75.25 335.93 3.29 -71.96 By element: Atomic # 1 Polarization: 12.96 SS G_CDS: 0.30 Total: 13.26 kcal Atomic # 6 Polarization: -23.17 SS G_CDS: 4.54 Total: -18.63 kcal Atomic # 7 Polarization: -107.46 SS G_CDS: -4.35 Total: -111.81 kcal Atomic # 9 Polarization: -2.47 SS G_CDS: 0.78 Total: -1.69 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.91 kcal Total: -75.25 3.29 -71.96 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584775540.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.892 kcal (2) G-P(sol) polarization free energy of solvation -75.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.962 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds