Wall clock time and date at job start Tue Mar 31 2020 06:44:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31386 * 1 3 3 Si 1.86794 * 120.00322 * 2 1 4 4 H 1.48501 * 109.47505 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47070 * 299.99635 * 3 2 1 6 6 H 1.48505 * 109.47220 * 59.99179 * 3 2 1 7 7 C 1.39032 * 119.99571 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99653 * 187.34267 * 7 2 1 9 9 N 1.36843 * 120.00091 * 7.35052 * 7 2 1 10 10 C 1.34779 * 120.00017 * 44.71964 * 9 7 2 11 11 O 1.21745 * 120.00219 * 3.92453 * 10 9 7 12 12 C 1.46513 * 119.99770 * 183.91950 * 10 9 7 13 13 O 1.34950 * 126.01753 * 352.99445 * 12 10 9 14 14 C 1.33978 * 109.37231 * 179.70090 * 13 12 10 15 15 C 1.35180 * 108.76978 * 0.19730 * 14 13 12 16 16 C 1.36603 * 126.01447 * 173.01616 * 12 10 9 17 17 C 1.51071 * 143.66063 * 359.95893 * 16 12 10 18 18 C 1.54377 * 105.23727 * 197.49479 * 17 16 12 19 19 C 1.51149 * 143.43198 * 180.02562 * 15 14 13 20 20 C 1.46499 * 119.99874 * 224.72600 * 9 7 2 21 21 C 1.54260 * 110.03423 * 50.07383 * 20 9 7 22 22 C 1.54966 * 104.16139 * 217.13877 * 21 20 9 23 23 C 1.54885 * 102.77732 * 37.88867 * 22 21 20 24 24 C 1.53878 * 110.02973 * 292.85742 * 20 9 7 25 25 H 0.97008 * 119.99810 * 5.00030 * 1 2 3 26 26 H 1.08008 * 125.61199 * 180.19392 * 14 13 12 27 27 H 1.09006 * 110.29548 * 316.43401 * 17 16 12 28 28 H 1.09004 * 110.29347 * 78.45992 * 17 16 12 29 29 H 1.09004 * 110.76406 * 91.86251 * 18 17 16 30 30 H 1.09002 * 110.76356 * 215.05894 * 18 17 16 31 31 H 1.08996 * 110.28670 * 43.85884 * 19 15 14 32 32 H 1.09005 * 110.28068 * 281.75544 * 19 15 14 33 33 H 1.08999 * 110.01883 * 171.47294 * 20 9 7 34 34 H 1.09000 * 110.48557 * 335.78484 * 21 20 9 35 35 H 1.09000 * 110.48616 * 98.43168 * 21 20 9 36 36 H 1.08998 * 110.71907 * 279.57483 * 22 21 20 37 37 H 1.08993 * 110.92511 * 156.29673 * 22 21 20 38 38 H 1.09000 * 110.49165 * 203.40672 * 23 22 21 39 39 H 1.09003 * 110.60008 * 80.81617 * 23 22 21 40 40 H 1.09001 * 110.03604 * 238.57111 * 24 20 9 41 41 H 1.09000 * 110.03265 * 359.95299 * 24 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3139 0.0000 0.0000 3 14 2.2479 1.6176 0.0000 4 1 3.7079 1.3463 0.0006 5 1 1.8893 2.3963 -1.2125 6 1 1.8891 2.3965 1.2124 7 6 2.0089 -1.2041 0.0005 8 1 3.0823 -1.2079 0.1201 9 7 1.3331 -2.3844 -0.1506 10 6 0.3760 -2.4970 -1.0928 11 8 0.1617 -1.5733 -1.8564 12 6 -0.4066 -3.7312 -1.1981 13 8 -0.1866 -4.8714 -0.5107 14 6 -1.1026 -5.7847 -0.8599 15 6 -1.9262 -5.2430 -1.7849 16 6 -1.4871 -3.9303 -2.0098 17 6 -2.3738 -3.2700 -3.0395 18 6 -3.6462 -4.1422 -3.0984 19 6 -3.1298 -5.5273 -2.6538 20 6 1.6498 -3.5254 0.7120 21 6 1.6486 -3.0864 2.1908 22 6 2.8070 -3.8952 2.8273 23 6 3.8795 -3.8950 1.7098 24 6 3.0675 -4.0397 0.4062 25 1 -0.4850 0.8369 -0.0732 26 1 -1.1715 -6.7884 -0.4671 27 1 -2.6247 -2.2560 -2.7279 28 1 -1.8789 -3.2549 -4.0106 29 1 -4.4016 -3.7709 -2.4057 30 1 -4.0411 -4.1815 -4.1136 31 1 -3.8952 -6.0497 -2.0799 32 1 -2.8380 -6.1184 -3.5219 33 1 0.9224 -4.3225 0.5584 34 1 1.8413 -2.0166 2.2713 35 1 0.6999 -3.3408 2.6634 36 1 2.4874 -4.9120 3.0558 37 1 3.1820 -3.3994 3.7226 38 1 4.5582 -4.7391 1.8322 39 1 4.4347 -2.9569 1.7113 40 1 3.0281 -5.0866 0.1051 41 1 3.5195 -3.4409 -0.3845 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000586784827.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:58 Heat of formation + Delta-G solvation = -0.400341 kcal Electronic energy + Delta-G solvation = -24185.011424 eV Core-core repulsion = 20839.149582 eV Total energy + Delta-G solvation = -3345.861842 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.21843 -38.60880 -36.90362 -36.50838 -33.34554 -31.60317 -30.14182 -29.63176 -28.01061 -26.94306 -26.75163 -24.71625 -22.46630 -21.14415 -20.08571 -19.88080 -19.44578 -18.74006 -16.88254 -16.03970 -15.88441 -15.54747 -14.81769 -14.66189 -14.59158 -14.07276 -13.87509 -13.36830 -12.95618 -12.69376 -12.64320 -12.48286 -12.20727 -11.47578 -11.29628 -11.11329 -11.03733 -10.92964 -10.89852 -10.80139 -10.76027 -10.55915 -10.46291 -10.42582 -10.21251 -10.05306 -9.48707 -8.82051 -8.73774 -8.29132 -7.78786 -7.10953 -6.07129 -3.90550 1.98478 2.92949 3.29216 3.35319 3.38797 3.47723 4.26959 4.52714 4.71306 4.90756 5.11364 5.18247 5.25997 5.29721 5.35622 5.46706 5.50505 5.60947 5.70511 5.88217 6.01920 6.02307 6.08447 6.18034 6.19229 6.26838 6.27491 6.39766 6.42168 6.47755 6.50065 6.51182 6.62323 6.66008 6.76874 6.88463 7.01857 7.08628 7.30836 7.58020 7.64876 8.28328 9.02560 9.15875 9.59522 10.26205 10.96261 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.014743 B = 0.007164 C = 0.005149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1898.812583 B = 3907.225064 C = 5436.755865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.057 3.943 3 Si 0.912 3.088 4 H -0.270 1.270 5 H -0.281 1.281 6 H -0.284 1.284 7 C -0.324 4.324 8 H 0.083 0.917 9 N -0.434 5.434 10 C 0.542 3.458 11 O -0.507 6.507 12 C -0.006 4.006 13 O -0.153 6.153 14 C -0.045 4.045 15 C -0.213 4.213 16 C -0.151 4.151 17 C -0.045 4.045 18 C -0.119 4.119 19 C -0.042 4.042 20 C 0.109 3.891 21 C -0.123 4.123 22 C -0.122 4.122 23 C -0.117 4.117 24 C -0.129 4.129 25 H 0.265 0.735 26 H 0.194 0.806 27 H 0.077 0.923 28 H 0.074 0.926 29 H 0.069 0.931 30 H 0.072 0.928 31 H 0.066 0.934 32 H 0.072 0.928 33 H 0.100 0.900 34 H 0.091 0.909 35 H 0.052 0.948 36 H 0.057 0.943 37 H 0.058 0.942 38 H 0.053 0.947 39 H 0.064 0.936 40 H 0.053 0.947 41 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.850 -11.106 0.392 11.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.459 5.459 2 C -0.154 4.154 3 Si 0.739 3.261 4 H -0.195 1.195 5 H -0.207 1.207 6 H -0.211 1.211 7 C -0.451 4.451 8 H 0.100 0.900 9 N -0.154 5.154 10 C 0.329 3.671 11 O -0.385 6.385 12 C -0.058 4.058 13 O -0.050 6.050 14 C -0.113 4.113 15 C -0.215 4.215 16 C -0.154 4.154 17 C -0.082 4.082 18 C -0.156 4.156 19 C -0.079 4.079 20 C 0.006 3.994 21 C -0.161 4.161 22 C -0.160 4.160 23 C -0.155 4.155 24 C -0.168 4.168 25 H 0.075 0.925 26 H 0.211 0.789 27 H 0.096 0.904 28 H 0.092 0.908 29 H 0.087 0.913 30 H 0.091 0.909 31 H 0.085 0.915 32 H 0.090 0.910 33 H 0.117 0.883 34 H 0.109 0.891 35 H 0.071 0.929 36 H 0.075 0.925 37 H 0.077 0.923 38 H 0.071 0.929 39 H 0.083 0.917 40 H 0.072 0.928 41 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -1.888 -10.510 0.255 10.681 hybrid contribution 0.178 0.630 0.056 0.657 sum -1.710 -9.880 0.311 10.031 Atomic orbital electron populations 1.69872 1.06268 1.27483 1.42231 1.25361 0.95040 0.99384 0.95591 0.86133 0.79722 0.82693 0.77569 1.19482 1.20731 1.21056 1.18973 0.91225 0.82271 1.52623 0.89956 1.43271 1.33956 1.10624 1.27573 1.16501 0.83760 0.83355 0.83512 1.90689 1.67815 1.36979 1.42991 1.22611 0.99628 0.87047 0.96561 1.84430 1.46184 1.20463 1.53928 1.23220 0.92192 0.95234 1.00623 1.21183 1.01464 0.96710 1.02116 1.20906 0.97139 0.96221 1.01161 1.20350 0.92566 0.99092 0.96227 1.22364 0.97525 0.94563 1.01146 1.20357 0.93135 0.97534 0.96861 1.22338 0.95945 0.90371 0.90787 1.22624 0.96782 1.02234 0.94485 1.22446 0.96555 0.99481 0.97508 1.22267 0.97259 1.00859 0.95118 1.22475 0.96443 0.99947 0.97948 0.92498 0.78878 0.90399 0.90808 0.91256 0.90904 0.91525 0.90973 0.88289 0.89068 0.92946 0.92453 0.92298 0.92856 0.91684 0.92775 0.91084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -24.32 11.11 55.50 0.62 -23.70 16 2 C 0.06 1.57 4.73 -17.45 -0.08 1.49 16 3 Si 0.91 21.48 29.56 -169.99 -5.03 16.46 16 4 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 5 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.32 -8.71 7.17 -15.02 -0.11 -8.82 16 8 H 0.08 2.14 7.63 -52.49 -0.40 1.74 16 9 N -0.43 -11.09 2.42 -108.07 -0.26 -11.35 16 10 C 0.54 14.66 6.77 -12.93 -0.09 14.57 16 11 O -0.51 -15.39 14.48 5.15 0.07 -15.32 16 12 C -0.01 -0.14 6.84 -36.84 -0.25 -0.40 16 13 O -0.15 -3.02 7.03 4.77 0.03 -2.98 16 14 C -0.04 -0.73 12.08 29.64 0.36 -0.37 16 15 C -0.21 -3.63 6.93 -104.74 -0.73 -4.36 16 16 C -0.15 -3.15 6.67 -104.28 -0.70 -3.84 16 17 C -0.05 -0.82 6.76 -26.98 -0.18 -1.00 16 18 C -0.12 -1.61 7.06 -25.29 -0.18 -1.79 16 19 C -0.04 -0.55 6.76 -26.95 -0.18 -0.74 16 20 C 0.11 2.29 3.14 -66.81 -0.21 2.08 16 21 C -0.12 -2.40 6.39 -25.03 -0.16 -2.56 16 22 C -0.12 -1.89 6.91 -24.70 -0.17 -2.06 16 23 C -0.12 -1.84 6.83 -25.07 -0.17 -2.01 16 24 C -0.13 -2.36 6.31 -25.61 -0.16 -2.52 16 25 H 0.26 7.50 8.32 -40.82 -0.34 7.16 16 26 H 0.19 2.18 8.06 -52.48 -0.42 1.76 16 27 H 0.08 1.55 8.14 -51.93 -0.42 1.13 16 28 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 29 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 30 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 31 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 32 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.10 2.05 3.73 -55.74 -0.21 1.84 16 34 H 0.09 2.02 6.73 -51.93 -0.35 1.67 16 35 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 40 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.07 1.42 7.49 -51.93 -0.39 1.03 16 LS Contribution 326.90 15.07 4.93 4.93 Total: -1.00 -32.37 326.90 -8.62 -40.99 By element: Atomic # 1 Polarization: 9.27 SS G_CDS: -5.98 Total: 3.30 kcal Atomic # 6 Polarization: -9.31 SS G_CDS: -3.01 Total: -12.32 kcal Atomic # 7 Polarization: -35.41 SS G_CDS: 0.35 Total: -35.05 kcal Atomic # 8 Polarization: -18.41 SS G_CDS: 0.11 Total: -18.30 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.03 Total: 16.46 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -32.37 -8.62 -40.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000586784827.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.588 kcal (2) G-P(sol) polarization free energy of solvation -32.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds