Wall clock time and date at job start Tue Mar 31 2020 06:44:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31386 * 1 3 3 Si 1.86794 * 120.00322 * 2 1 4 4 H 1.48501 * 109.47505 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47070 * 299.99635 * 3 2 1 6 6 H 1.48505 * 109.47220 * 59.99179 * 3 2 1 7 7 C 1.39032 * 119.99571 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99653 * 187.34267 * 7 2 1 9 9 N 1.36843 * 120.00091 * 7.35052 * 7 2 1 10 10 C 1.34779 * 120.00017 * 44.71964 * 9 7 2 11 11 O 1.21745 * 120.00219 * 3.92453 * 10 9 7 12 12 C 1.46513 * 119.99770 * 183.91950 * 10 9 7 13 13 O 1.34950 * 126.01753 * 352.99445 * 12 10 9 14 14 C 1.33978 * 109.37231 * 179.70090 * 13 12 10 15 15 C 1.35180 * 108.76978 * 0.19730 * 14 13 12 16 16 C 1.36603 * 126.01447 * 173.01616 * 12 10 9 17 17 C 1.51071 * 143.66063 * 359.95893 * 16 12 10 18 18 C 1.54377 * 105.23727 * 197.49479 * 17 16 12 19 19 C 1.51149 * 143.43198 * 180.02562 * 15 14 13 20 20 C 1.46499 * 119.99874 * 224.72600 * 9 7 2 21 21 C 1.54260 * 110.03423 * 50.07383 * 20 9 7 22 22 C 1.54966 * 104.16139 * 217.13877 * 21 20 9 23 23 C 1.54885 * 102.77732 * 37.88867 * 22 21 20 24 24 C 1.53878 * 110.02973 * 292.85742 * 20 9 7 25 25 H 0.97008 * 119.99810 * 5.00030 * 1 2 3 26 26 H 1.08008 * 125.61199 * 180.19392 * 14 13 12 27 27 H 1.09006 * 110.29548 * 316.43401 * 17 16 12 28 28 H 1.09004 * 110.29347 * 78.45992 * 17 16 12 29 29 H 1.09004 * 110.76406 * 91.86251 * 18 17 16 30 30 H 1.09002 * 110.76356 * 215.05894 * 18 17 16 31 31 H 1.08996 * 110.28670 * 43.85884 * 19 15 14 32 32 H 1.09005 * 110.28068 * 281.75544 * 19 15 14 33 33 H 1.08999 * 110.01883 * 171.47294 * 20 9 7 34 34 H 1.09000 * 110.48557 * 335.78484 * 21 20 9 35 35 H 1.09000 * 110.48616 * 98.43168 * 21 20 9 36 36 H 1.08998 * 110.71907 * 279.57483 * 22 21 20 37 37 H 1.08993 * 110.92511 * 156.29673 * 22 21 20 38 38 H 1.09000 * 110.49165 * 203.40672 * 23 22 21 39 39 H 1.09003 * 110.60008 * 80.81617 * 23 22 21 40 40 H 1.09001 * 110.03604 * 238.57111 * 24 20 9 41 41 H 1.09000 * 110.03265 * 359.95299 * 24 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3139 0.0000 0.0000 3 14 2.2479 1.6176 0.0000 4 1 3.7079 1.3463 0.0006 5 1 1.8893 2.3963 -1.2125 6 1 1.8891 2.3965 1.2124 7 6 2.0089 -1.2041 0.0005 8 1 3.0823 -1.2079 0.1201 9 7 1.3331 -2.3844 -0.1506 10 6 0.3760 -2.4970 -1.0928 11 8 0.1617 -1.5733 -1.8564 12 6 -0.4066 -3.7312 -1.1981 13 8 -0.1866 -4.8714 -0.5107 14 6 -1.1026 -5.7847 -0.8599 15 6 -1.9262 -5.2430 -1.7849 16 6 -1.4871 -3.9303 -2.0098 17 6 -2.3738 -3.2700 -3.0395 18 6 -3.6462 -4.1422 -3.0984 19 6 -3.1298 -5.5273 -2.6538 20 6 1.6498 -3.5254 0.7120 21 6 1.6486 -3.0864 2.1908 22 6 2.8070 -3.8952 2.8273 23 6 3.8795 -3.8950 1.7098 24 6 3.0675 -4.0397 0.4062 25 1 -0.4850 0.8369 -0.0732 26 1 -1.1715 -6.7884 -0.4671 27 1 -2.6247 -2.2560 -2.7279 28 1 -1.8789 -3.2549 -4.0106 29 1 -4.4016 -3.7709 -2.4057 30 1 -4.0411 -4.1815 -4.1136 31 1 -3.8952 -6.0497 -2.0799 32 1 -2.8380 -6.1184 -3.5219 33 1 0.9224 -4.3225 0.5584 34 1 1.8413 -2.0166 2.2713 35 1 0.6999 -3.3408 2.6634 36 1 2.4874 -4.9120 3.0558 37 1 3.1820 -3.3994 3.7226 38 1 4.5582 -4.7391 1.8322 39 1 4.4347 -2.9569 1.7113 40 1 3.0281 -5.0866 0.1051 41 1 3.5195 -3.4409 -0.3845 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000586784827.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:57 Heat of formation + Delta-G solvation = -19.568718 kcal Electronic energy + Delta-G solvation = -24185.842628 eV Core-core repulsion = 20839.149582 eV Total energy + Delta-G solvation = -3346.693045 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.70679 -40.39014 -38.45727 -38.01801 -35.27244 -33.56759 -31.51117 -31.14355 -29.46504 -28.57782 -28.21040 -26.54658 -23.92567 -22.74030 -21.52794 -21.32908 -20.98370 -20.38573 -18.63539 -17.73378 -17.43658 -17.03344 -16.67464 -16.16964 -15.91200 -15.78311 -15.46949 -14.93309 -14.80773 -14.23938 -14.11308 -13.89073 -13.59095 -13.28751 -12.96932 -12.79459 -12.64256 -12.49848 -12.45682 -12.26836 -12.07158 -12.03800 -12.01740 -11.88597 -11.81484 -11.39275 -11.08417 -10.85123 -10.34911 -10.11760 -9.36052 -9.11101 -8.16423 -6.04105 0.39764 1.36212 1.40729 1.50611 1.52384 1.95431 2.33456 2.75624 3.13425 3.21106 3.24374 3.84467 3.90263 3.93181 4.02974 4.16846 4.20657 4.32911 4.39100 4.51162 4.65433 4.76337 4.80225 4.82684 4.86820 4.91634 4.93290 5.01523 5.07794 5.13442 5.17121 5.17338 5.26849 5.32652 5.35411 5.40114 5.53353 5.55750 5.63291 5.73836 6.09520 6.24169 6.97337 7.16083 7.58681 8.25972 8.87054 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.014743 B = 0.007164 C = 0.005149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1898.812583 B = 3907.225064 C = 5436.755865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.004 3.996 3 Si 0.975 3.025 4 H -0.253 1.253 5 H -0.292 1.292 6 H -0.274 1.274 7 C -0.331 4.331 8 H 0.085 0.915 9 N -0.446 5.446 10 C 0.529 3.471 11 O -0.564 6.564 12 C -0.062 4.062 13 O -0.158 6.158 14 C -0.018 4.018 15 C -0.221 4.221 16 C -0.163 4.163 17 C -0.055 4.055 18 C -0.108 4.108 19 C -0.035 4.035 20 C 0.099 3.901 21 C -0.124 4.124 22 C -0.108 4.108 23 C -0.111 4.111 24 C -0.125 4.125 25 H 0.258 0.742 26 H 0.253 0.747 27 H 0.043 0.957 28 H 0.074 0.926 29 H 0.071 0.929 30 H 0.105 0.895 31 H 0.097 0.903 32 H 0.095 0.905 33 H 0.106 0.894 34 H 0.055 0.945 35 H 0.049 0.951 36 H 0.084 0.916 37 H 0.075 0.925 38 H 0.088 0.912 39 H 0.053 0.947 40 H 0.077 0.923 41 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.930 -14.668 1.139 14.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.202 4.202 3 Si 0.799 3.201 4 H -0.177 1.177 5 H -0.219 1.219 6 H -0.200 1.200 7 C -0.459 4.459 8 H 0.102 0.898 9 N -0.165 5.165 10 C 0.318 3.682 11 O -0.446 6.446 12 C -0.114 4.114 13 O -0.056 6.056 14 C -0.086 4.086 15 C -0.223 4.223 16 C -0.166 4.166 17 C -0.093 4.093 18 C -0.145 4.145 19 C -0.072 4.072 20 C -0.004 4.004 21 C -0.162 4.162 22 C -0.145 4.145 23 C -0.149 4.149 24 C -0.164 4.164 25 H 0.067 0.933 26 H 0.268 0.732 27 H 0.062 0.938 28 H 0.092 0.908 29 H 0.090 0.910 30 H 0.123 0.877 31 H 0.115 0.885 32 H 0.113 0.887 33 H 0.123 0.877 34 H 0.074 0.926 35 H 0.068 0.932 36 H 0.102 0.898 37 H 0.094 0.906 38 H 0.107 0.893 39 H 0.072 0.928 40 H 0.095 0.905 41 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -1.933 -14.102 1.043 14.272 hybrid contribution 0.148 1.571 -0.221 1.594 sum -1.784 -12.531 0.821 12.684 Atomic orbital electron populations 1.70023 1.07939 1.27626 1.44652 1.26245 0.95735 1.02867 0.95350 0.85167 0.79284 0.78421 0.77183 1.17691 1.21889 1.19975 1.19193 0.91462 0.83339 1.51886 0.89778 1.43528 1.33558 1.11434 1.27968 1.17063 0.83923 0.84268 0.82955 1.90613 1.69568 1.39461 1.44968 1.21878 1.01686 0.87547 1.00287 1.84326 1.47412 1.20037 1.53812 1.24378 0.89642 0.95969 0.98564 1.21749 1.02950 0.94646 1.02908 1.21524 0.96160 0.98726 1.00195 1.20548 0.94827 0.98392 0.95503 1.22386 0.94950 0.93787 1.03352 1.20481 0.92066 0.97353 0.97278 1.22658 0.97825 0.89099 0.90807 1.22571 0.98678 1.00771 0.94205 1.22409 0.94321 1.00233 0.97578 1.22256 0.97375 1.01832 0.93418 1.22429 0.94783 1.00485 0.98681 0.93260 0.73167 0.93806 0.90806 0.90991 0.87695 0.88461 0.88698 0.87706 0.92613 0.93208 0.89765 0.90631 0.89308 0.92816 0.90467 0.93858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -54.67 11.11 21.68 0.24 -54.43 16 2 C 0.00 0.21 4.73 84.95 0.40 0.61 16 3 Si 0.98 46.24 29.56 68.60 2.03 48.27 16 4 H -0.25 -11.15 7.11 99.48 0.71 -10.44 16 5 H -0.29 -14.26 7.11 99.48 0.71 -13.55 16 6 H -0.27 -12.41 7.11 99.48 0.71 -11.71 16 7 C -0.33 -18.80 7.17 84.10 0.60 -18.20 16 8 H 0.08 4.59 7.63 -2.91 -0.02 4.57 16 9 N -0.45 -24.02 2.42 -614.02 -1.49 -25.51 16 10 C 0.53 30.53 6.77 86.40 0.59 31.12 16 11 O -0.56 -37.03 14.48 -4.49 -0.07 -37.10 16 12 C -0.06 -3.00 6.84 24.05 0.16 -2.84 16 13 O -0.16 -6.12 7.03 -5.86 -0.04 -6.16 16 14 C -0.02 -0.53 12.08 67.11 0.81 0.28 16 15 C -0.22 -6.94 6.93 -19.94 -0.14 -7.08 16 16 C -0.16 -6.87 6.67 -19.64 -0.13 -7.00 16 17 C -0.06 -2.06 6.76 30.43 0.21 -1.86 16 18 C -0.11 -2.67 7.06 31.53 0.22 -2.45 16 19 C -0.03 -0.78 6.76 30.45 0.21 -0.57 16 20 C 0.10 4.21 3.14 45.72 0.14 4.35 16 21 C -0.12 -4.86 6.39 31.69 0.20 -4.66 16 22 C -0.11 -3.05 6.91 31.91 0.22 -2.83 16 23 C -0.11 -3.23 6.83 31.67 0.22 -3.01 16 24 C -0.13 -4.48 6.31 31.32 0.20 -4.28 16 25 H 0.26 15.72 8.32 -92.70 -0.77 14.95 16 26 H 0.25 4.06 8.06 -2.91 -0.02 4.03 16 27 H 0.04 1.89 8.14 -2.38 -0.02 1.87 16 28 H 0.07 2.68 8.14 -2.38 -0.02 2.66 16 29 H 0.07 1.75 8.14 -2.38 -0.02 1.73 16 30 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 31 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.09 1.74 8.14 -2.38 -0.02 1.72 16 33 H 0.11 4.35 3.73 -62.68 -0.23 4.11 16 34 H 0.06 2.58 6.73 -2.39 -0.02 2.56 16 35 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 36 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 37 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 38 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 39 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 40 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 41 H 0.04 1.77 7.49 -2.39 -0.02 1.75 16 Total: -1.00 -79.20 326.90 5.39 -73.81 By element: Atomic # 1 Polarization: 18.73 SS G_CDS: 0.80 Total: 19.53 kcal Atomic # 6 Polarization: -22.33 SS G_CDS: 3.91 Total: -18.42 kcal Atomic # 7 Polarization: -78.69 SS G_CDS: -1.25 Total: -79.94 kcal Atomic # 8 Polarization: -43.15 SS G_CDS: -0.11 Total: -43.26 kcal Atomic # 14 Polarization: 46.24 SS G_CDS: 2.03 Total: 48.27 kcal Total: -79.20 5.39 -73.81 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000586784827.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.245 kcal (2) G-P(sol) polarization free energy of solvation -79.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds