Wall clock time and date at job start Tue Mar 31 2020 06:52:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 119.99758 * 2 1 4 4 H 1.48504 * 109.47429 * 239.99975 * 3 2 1 5 5 H 1.48500 * 109.47590 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46959 * 119.99907 * 3 2 1 7 7 C 1.37873 * 120.00154 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00029 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99766 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.46813 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.46927 * 179.97438 * 10 9 7 12 12 C 1.53005 * 109.47150 * 180.02562 * 11 10 9 13 13 C 1.50704 * 109.47037 * 180.02562 * 12 11 10 14 14 O 1.21279 * 119.99787 * 0.02562 * 13 12 11 15 15 N 1.34776 * 119.99729 * 180.27642 * 13 12 11 16 16 C 1.39922 * 119.99910 * 174.45757 * 15 13 12 17 17 C 1.38902 * 120.05194 * 326.52029 * 16 15 13 18 18 C 1.38167 * 119.96788 * 179.79056 * 17 16 15 19 19 C 1.38035 * 120.00969 * 0.47540 * 18 17 16 20 20 C 1.38653 * 120.15472 * 359.78122 * 19 18 17 21 21 C 1.37853 * 120.11379 * 359.97438 * 20 19 18 22 22 C 1.51104 * 107.26825 * 179.97438 * 20 19 18 23 23 O 1.43936 * 105.95415 * 17.69901 * 22 20 19 24 24 C 1.43940 * 104.95725 * 331.52802 * 23 22 20 25 25 H 0.97008 * 120.00349 * 0.02562 * 1 2 3 26 26 H 1.09000 * 109.47036 * 60.00179 * 9 7 2 27 27 H 1.08995 * 109.47412 * 300.00301 * 9 7 2 28 28 H 1.09000 * 109.46895 * 60.00433 * 10 9 7 29 29 H 1.08995 * 109.48079 * 300.00163 * 10 9 7 30 30 H 1.09000 * 109.46969 * 60.00492 * 11 10 9 31 31 H 1.09002 * 109.47223 * 300.00342 * 11 10 9 32 32 H 1.09000 * 109.47085 * 60.00193 * 12 11 10 33 33 H 1.09002 * 109.47035 * 300.00088 * 12 11 10 34 34 H 0.96999 * 119.99780 * 354.44774 * 15 13 12 35 35 H 1.08001 * 120.01218 * 0.02799 * 17 16 15 36 36 H 1.08002 * 119.99101 * 180.23290 * 18 17 16 37 37 H 1.07997 * 120.07018 * 180.02562 * 21 20 19 38 38 H 1.08991 * 110.15627 * 136.82126 * 22 20 19 39 39 H 1.09000 * 110.14933 * 258.58148 * 22 20 19 40 40 H 1.09001 * 110.15483 * 147.60270 * 24 23 22 41 41 H 1.09004 * 110.15258 * 269.28168 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 6 2.2453 -3.6620 -0.0027 11 6 1.4803 -4.9870 -0.0033 12 6 2.4745 -6.1500 -0.0037 13 6 1.7210 -7.4551 -0.0048 14 8 0.5082 -7.4550 -0.0058 15 7 2.3949 -8.6223 0.0003 16 6 1.6997 -9.8310 0.1162 17 6 0.5399 -9.8961 0.8778 18 6 -0.1476 -11.0895 0.9876 19 6 0.3234 -12.2189 0.3488 20 6 1.4837 -12.1583 -0.4078 21 6 2.1714 -10.9694 -0.5254 22 6 1.7273 -13.5408 -0.9670 23 8 0.4746 -14.2403 -0.8521 24 6 -0.1835 -13.6407 0.2789 25 1 -0.4851 0.8401 -0.0004 26 1 0.6247 -2.5563 -0.8920 27 1 0.6240 -2.5575 0.8879 28 1 2.8719 -3.6050 0.8873 29 1 2.8720 -3.6035 -0.8926 30 1 0.8534 -5.0442 -0.8931 31 1 0.8538 -5.0453 0.8869 32 1 3.1011 -6.0926 0.8864 33 1 3.1013 -6.0919 -0.8936 34 1 3.3618 -8.6243 -0.0766 35 1 0.1736 -9.0133 1.3807 36 1 -1.0515 -11.1396 1.5766 37 1 3.0749 -10.9229 -1.1152 38 1 2.0264 -13.4755 -2.0130 39 1 2.4965 -14.0503 -0.3867 40 1 -1.2635 -13.6477 0.1322 41 1 0.0745 -14.1778 1.1917 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588162961.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:38 Heat of formation + Delta-G solvation = -67.814478 kcal Electronic energy + Delta-G solvation = -21315.674197 eV Core-core repulsion = 17966.889058 eV Total energy + Delta-G solvation = -3348.785139 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.19711 -40.06846 -37.63094 -35.06034 -34.73031 -32.68442 -31.85431 -30.87774 -29.57133 -28.06598 -25.90224 -24.67430 -23.05488 -22.16831 -21.53173 -20.19543 -20.04082 -17.81875 -17.18401 -16.84452 -16.48531 -16.22695 -16.13066 -15.54479 -14.84641 -14.58146 -14.42248 -14.02273 -13.92237 -13.74970 -13.27379 -13.03179 -12.66865 -12.62711 -12.30773 -11.99361 -11.74409 -11.66229 -11.49482 -11.00073 -10.67186 -10.58329 -10.56373 -10.46012 -10.18910 -9.93559 -9.64959 -9.27208 -9.14502 -9.02422 -8.32060 -8.28382 -5.96812 -3.99623 0.85605 0.99702 2.47310 2.78629 3.34039 3.38624 3.39162 3.40640 3.55447 3.94435 4.27217 4.46801 4.51784 4.65302 4.90222 4.95820 5.01334 5.05683 5.16924 5.19671 5.25121 5.32303 5.38333 5.38418 5.56908 5.74310 5.86383 5.93325 6.01077 6.06413 6.18351 6.22505 6.35902 6.47713 6.68565 6.77796 6.95482 7.12924 7.18247 7.71409 7.86983 7.98356 8.04056 8.45507 9.07771 9.64059 11.14403 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.057251 B = 0.002088 C = 0.002042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 488.954968 B =13407.130183 C =13711.708276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.055 3.945 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.522 4.522 8 H 0.054 0.946 9 C 0.020 3.980 10 C -0.110 4.110 11 C -0.104 4.104 12 C -0.137 4.137 13 C 0.512 3.488 14 O -0.512 6.512 15 N -0.681 5.681 16 C 0.161 3.839 17 C -0.117 4.117 18 C -0.071 4.071 19 C -0.155 4.155 20 C -0.115 4.115 21 C -0.124 4.124 22 C 0.093 3.907 23 O -0.362 6.362 24 C 0.094 3.906 25 H 0.261 0.739 26 H 0.016 0.984 27 H 0.016 0.984 28 H 0.047 0.953 29 H 0.047 0.953 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.096 0.904 33 H 0.094 0.906 34 H 0.412 0.588 35 H 0.142 0.858 36 H 0.130 0.870 37 H 0.129 0.871 38 H 0.097 0.903 39 H 0.078 0.922 40 H 0.097 0.903 41 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.930 -28.102 1.137 28.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.146 4.146 3 Si 0.720 3.280 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.560 4.560 8 H 0.072 0.928 9 C -0.017 4.017 10 C -0.148 4.148 11 C -0.142 4.142 12 C -0.177 4.177 13 C 0.301 3.699 14 O -0.385 6.385 15 N -0.327 5.327 16 C 0.066 3.934 17 C -0.137 4.137 18 C -0.089 4.089 19 C -0.156 4.156 20 C -0.116 4.116 21 C -0.144 4.144 22 C 0.017 3.983 23 O -0.281 6.281 24 C 0.018 3.982 25 H 0.070 0.930 26 H 0.034 0.966 27 H 0.034 0.966 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.114 0.886 33 H 0.113 0.887 34 H 0.248 0.752 35 H 0.160 0.840 36 H 0.147 0.853 37 H 0.147 0.853 38 H 0.115 0.885 39 H 0.096 0.904 40 H 0.115 0.885 41 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 4.825 -28.059 1.008 28.489 hybrid contribution 1.069 1.184 0.065 1.596 sum 5.894 -26.876 1.073 27.535 Atomic orbital electron populations 1.69964 1.06046 1.26658 1.50761 1.25046 0.94859 0.99254 0.95438 0.86662 0.79566 0.83222 0.78543 1.20283 1.21314 1.20288 1.21235 0.92936 0.91188 1.50627 0.92799 1.19091 0.94043 0.91250 0.97335 1.21650 0.99107 0.93881 1.00152 1.21484 0.96992 0.92657 1.03115 1.21836 1.00214 0.91208 1.04441 1.21387 0.88641 0.85356 0.74510 1.90731 1.14121 1.87250 1.46404 1.43768 1.10851 1.04261 1.73830 1.17665 0.94368 0.85564 0.95820 1.21197 0.95403 0.98553 0.98533 1.20279 0.99486 0.90487 0.98687 1.20989 0.97638 0.96117 1.00858 1.20744 0.96092 0.95319 0.99460 1.20018 1.02042 0.90851 1.01503 1.21724 0.87378 0.87285 1.01908 1.89081 1.31410 1.58058 1.49544 1.21713 0.98396 0.88298 0.89817 0.92963 0.96585 0.96573 0.93403 0.93396 0.91654 0.91673 0.88591 0.88728 0.75226 0.84004 0.85258 0.85340 0.88474 0.90442 0.88545 0.90607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.38 13.29 55.43 0.74 -26.64 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.78 29.54 -169.99 -5.02 16.76 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.52 -14.90 9.11 -34.44 -0.31 -15.21 16 8 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 9 C 0.02 0.52 4.97 -27.88 -0.14 0.38 16 10 C -0.11 -2.20 5.15 -26.73 -0.14 -2.34 16 11 C -0.10 -1.78 4.50 -26.73 -0.12 -1.90 16 12 C -0.14 -1.65 5.70 -27.88 -0.16 -1.81 16 13 C 0.51 6.62 7.57 -10.98 -0.08 6.54 16 14 O -0.51 -8.69 13.68 5.56 0.08 -8.61 16 15 N -0.68 -6.63 5.34 -9.84 -0.05 -6.68 16 16 C 0.16 1.74 6.28 -83.66 -0.53 1.22 16 17 C -0.12 -1.38 8.66 -39.36 -0.34 -1.72 16 18 C -0.07 -0.71 10.03 -39.68 -0.40 -1.11 16 19 C -0.15 -1.49 6.32 -104.34 -0.66 -2.15 16 20 C -0.12 -1.07 6.32 -104.41 -0.66 -1.73 16 21 C -0.12 -1.13 9.96 -39.47 -0.39 -1.52 16 22 C 0.09 0.72 7.63 36.20 0.28 0.99 16 23 O -0.36 -3.49 11.72 -35.23 -0.41 -3.91 16 24 C 0.09 0.75 7.63 36.21 0.28 1.03 16 25 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 26 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 28 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 30 H 0.06 1.20 8.10 -51.93 -0.42 0.78 16 31 H 0.06 1.18 8.10 -51.93 -0.42 0.76 16 32 H 0.10 0.97 8.14 -51.93 -0.42 0.54 16 33 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 34 H 0.41 2.51 8.82 -40.82 -0.36 2.15 16 35 H 0.14 1.87 6.43 -52.49 -0.34 1.53 16 36 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 37 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 38 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 39 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 345.21 15.07 5.20 5.20 Total: -1.00 -34.48 345.21 -9.10 -43.58 By element: Atomic # 1 Polarization: 4.28 SS G_CDS: -6.15 Total: -1.87 kcal Atomic # 6 Polarization: -14.36 SS G_CDS: -3.47 Total: -17.84 kcal Atomic # 7 Polarization: -34.01 SS G_CDS: 0.68 Total: -33.32 kcal Atomic # 8 Polarization: -12.18 SS G_CDS: -0.34 Total: -12.52 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -34.48 -9.10 -43.58 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588162961.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.232 kcal (2) G-P(sol) polarization free energy of solvation -34.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds