Wall clock time and date at job start Tue Mar 31 2020 06:52:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 119.99758 * 2 1 4 4 H 1.48504 * 109.47429 * 239.99975 * 3 2 1 5 5 H 1.48500 * 109.47590 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46959 * 119.99907 * 3 2 1 7 7 C 1.37873 * 120.00154 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00029 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99766 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.46813 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.46927 * 179.97438 * 10 9 7 12 12 C 1.53005 * 109.47150 * 180.02562 * 11 10 9 13 13 C 1.50704 * 109.47037 * 180.02562 * 12 11 10 14 14 O 1.21279 * 119.99787 * 0.02562 * 13 12 11 15 15 N 1.34776 * 119.99729 * 180.27642 * 13 12 11 16 16 C 1.39922 * 119.99910 * 174.45757 * 15 13 12 17 17 C 1.38902 * 120.05194 * 326.52029 * 16 15 13 18 18 C 1.38167 * 119.96788 * 179.79056 * 17 16 15 19 19 C 1.38035 * 120.00969 * 0.47540 * 18 17 16 20 20 C 1.38653 * 120.15472 * 359.78122 * 19 18 17 21 21 C 1.37853 * 120.11379 * 359.97438 * 20 19 18 22 22 C 1.51104 * 107.26825 * 179.97438 * 20 19 18 23 23 O 1.43936 * 105.95415 * 17.69901 * 22 20 19 24 24 C 1.43940 * 104.95725 * 331.52802 * 23 22 20 25 25 H 0.97008 * 120.00349 * 0.02562 * 1 2 3 26 26 H 1.09000 * 109.47036 * 60.00179 * 9 7 2 27 27 H 1.08995 * 109.47412 * 300.00301 * 9 7 2 28 28 H 1.09000 * 109.46895 * 60.00433 * 10 9 7 29 29 H 1.08995 * 109.48079 * 300.00163 * 10 9 7 30 30 H 1.09000 * 109.46969 * 60.00492 * 11 10 9 31 31 H 1.09002 * 109.47223 * 300.00342 * 11 10 9 32 32 H 1.09000 * 109.47085 * 60.00193 * 12 11 10 33 33 H 1.09002 * 109.47035 * 300.00088 * 12 11 10 34 34 H 0.96999 * 119.99780 * 354.44774 * 15 13 12 35 35 H 1.08001 * 120.01218 * 0.02799 * 17 16 15 36 36 H 1.08002 * 119.99101 * 180.23290 * 18 17 16 37 37 H 1.07997 * 120.07018 * 180.02562 * 21 20 19 38 38 H 1.08991 * 110.15627 * 136.82126 * 22 20 19 39 39 H 1.09000 * 110.14933 * 258.58148 * 22 20 19 40 40 H 1.09001 * 110.15483 * 147.60270 * 24 23 22 41 41 H 1.09004 * 110.15258 * 269.28168 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 6 2.2453 -3.6620 -0.0027 11 6 1.4803 -4.9870 -0.0033 12 6 2.4745 -6.1500 -0.0037 13 6 1.7210 -7.4551 -0.0048 14 8 0.5082 -7.4550 -0.0058 15 7 2.3949 -8.6223 0.0003 16 6 1.6997 -9.8310 0.1162 17 6 0.5399 -9.8961 0.8778 18 6 -0.1476 -11.0895 0.9876 19 6 0.3234 -12.2189 0.3488 20 6 1.4837 -12.1583 -0.4078 21 6 2.1714 -10.9694 -0.5254 22 6 1.7273 -13.5408 -0.9670 23 8 0.4746 -14.2403 -0.8521 24 6 -0.1835 -13.6407 0.2789 25 1 -0.4851 0.8401 -0.0004 26 1 0.6247 -2.5563 -0.8920 27 1 0.6240 -2.5575 0.8879 28 1 2.8719 -3.6050 0.8873 29 1 2.8720 -3.6035 -0.8926 30 1 0.8534 -5.0442 -0.8931 31 1 0.8538 -5.0453 0.8869 32 1 3.1011 -6.0926 0.8864 33 1 3.1013 -6.0919 -0.8936 34 1 3.3618 -8.6243 -0.0766 35 1 0.1736 -9.0133 1.3807 36 1 -1.0515 -11.1396 1.5766 37 1 3.0749 -10.9229 -1.1152 38 1 2.0264 -13.4755 -2.0130 39 1 2.4965 -14.0503 -0.3867 40 1 -1.2635 -13.6477 0.1322 41 1 0.0745 -14.1778 1.1917 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588162961.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:38 Heat of formation + Delta-G solvation = -90.035645 kcal Electronic energy + Delta-G solvation = -21316.637779 eV Core-core repulsion = 17966.889058 eV Total energy + Delta-G solvation = -3349.748721 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.96822 -40.94284 -38.44651 -36.65316 -35.66913 -34.62621 -32.56450 -32.02000 -30.90556 -28.78887 -27.51057 -25.56531 -24.45796 -23.00781 -22.59164 -21.66939 -21.11886 -18.68118 -18.39899 -18.05252 -17.52882 -17.19619 -17.07388 -16.51913 -16.50324 -15.76586 -15.32807 -15.28053 -14.81009 -14.58212 -14.49307 -14.03406 -13.82500 -13.61638 -13.60571 -13.30532 -13.21660 -12.81067 -12.72625 -12.38578 -12.24306 -12.16817 -12.13457 -11.46030 -11.36711 -11.35592 -11.19364 -10.91966 -10.74977 -10.54407 -9.87295 -9.06658 -8.18641 -6.30857 0.06769 0.25494 1.40379 1.44278 1.51986 1.52116 1.94267 2.41939 2.62880 2.95746 3.13975 3.26367 3.61209 3.66439 3.91061 4.01757 4.13818 4.21362 4.30669 4.42492 4.44618 4.58591 4.60865 4.67553 4.69945 4.75250 4.82593 4.85258 4.89816 5.10467 5.18018 5.20310 5.28356 5.33293 5.35235 5.41334 5.56987 5.70835 5.78281 5.88181 5.90411 6.25084 6.37545 6.87715 7.09348 7.38753 8.93277 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.057251 B = 0.002088 C = 0.002042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 488.954968 B =13407.130183 C =13711.708276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.008 4.008 3 Si 0.970 3.030 4 H -0.264 1.264 5 H -0.286 1.286 6 H -0.264 1.264 7 C -0.542 4.542 8 H 0.067 0.933 9 C 0.018 3.982 10 C -0.096 4.096 11 C -0.098 4.098 12 C -0.125 4.125 13 C 0.512 3.488 14 O -0.563 6.563 15 N -0.661 5.661 16 C 0.142 3.858 17 C -0.141 4.141 18 C -0.079 4.079 19 C -0.163 4.163 20 C -0.122 4.122 21 C -0.117 4.117 22 C 0.093 3.907 23 O -0.382 6.382 24 C 0.093 3.907 25 H 0.263 0.737 26 H -0.016 1.016 27 H -0.016 1.016 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.043 0.957 31 H 0.044 0.956 32 H 0.126 0.874 33 H 0.125 0.875 34 H 0.431 0.569 35 H 0.119 0.881 36 H 0.141 0.859 37 H 0.159 0.841 38 H 0.112 0.888 39 H 0.099 0.901 40 H 0.105 0.895 41 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.946 -29.268 0.754 30.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.205 4.205 3 Si 0.794 3.206 4 H -0.189 1.189 5 H -0.212 1.212 6 H -0.189 1.189 7 C -0.580 4.580 8 H 0.085 0.915 9 C -0.019 4.019 10 C -0.133 4.133 11 C -0.136 4.136 12 C -0.164 4.164 13 C 0.302 3.698 14 O -0.440 6.440 15 N -0.308 5.308 16 C 0.048 3.952 17 C -0.161 4.161 18 C -0.098 4.098 19 C -0.164 4.164 20 C -0.123 4.123 21 C -0.137 4.137 22 C 0.017 3.983 23 O -0.301 6.301 24 C 0.017 3.983 25 H 0.071 0.929 26 H 0.002 0.998 27 H 0.003 0.997 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.144 0.856 33 H 0.143 0.857 34 H 0.271 0.729 35 H 0.137 0.863 36 H 0.159 0.841 37 H 0.176 0.824 38 H 0.130 0.870 39 H 0.117 0.883 40 H 0.123 0.877 41 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 7.902 -29.264 0.625 30.318 hybrid contribution 0.077 1.467 0.190 1.481 sum 7.979 -27.797 0.815 28.931 Atomic orbital electron populations 1.70127 1.08063 1.27796 1.51847 1.26106 0.95800 1.03785 0.94846 0.85435 0.78157 0.77697 0.79350 1.18895 1.21178 1.18894 1.21733 0.93770 0.92210 1.50256 0.91492 1.19062 0.94733 0.93856 0.94293 1.21444 0.97800 0.92603 1.01473 1.21267 0.97519 0.93616 1.01176 1.21701 0.98934 0.88395 1.07362 1.21496 0.88003 0.86427 0.73839 1.90727 1.16314 1.87935 1.49018 1.43487 1.11720 1.03128 1.72496 1.17824 0.94532 0.86370 0.96503 1.21177 0.96666 0.98452 0.99803 1.20416 0.99938 0.90310 0.99132 1.21265 0.97965 0.96697 1.00476 1.21106 0.95853 0.96256 0.99080 1.20259 1.02727 0.89905 1.00817 1.21914 0.87163 0.86132 1.03117 1.89060 1.32376 1.58506 1.50164 1.21844 0.98848 0.87319 0.90247 0.92881 0.99779 0.99728 0.91917 0.91919 0.93806 0.93716 0.85635 0.85654 0.72877 0.86310 0.84076 0.82370 0.87040 0.88331 0.87721 0.88762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.95 13.29 21.45 0.28 -58.67 16 2 C -0.01 -0.48 5.46 84.65 0.46 -0.02 16 3 Si 0.97 44.57 29.54 68.60 2.03 46.60 16 4 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 5 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16 6 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 7 C -0.54 -31.16 9.11 25.60 0.23 -30.92 16 8 H 0.07 3.59 7.74 -2.91 -0.02 3.56 16 9 C 0.02 0.96 4.97 29.85 0.15 1.11 16 10 C -0.10 -3.77 5.15 30.59 0.16 -3.62 16 11 C -0.10 -3.35 4.50 30.60 0.14 -3.21 16 12 C -0.12 -2.75 5.70 29.85 0.17 -2.58 16 13 C 0.51 12.92 7.57 87.66 0.66 13.58 16 14 O -0.56 -19.89 13.68 -3.03 -0.04 -19.93 16 15 N -0.66 -11.77 5.34 -303.44 -1.62 -13.39 16 16 C 0.14 2.96 6.28 38.17 0.24 3.20 16 17 C -0.14 -3.43 8.66 22.41 0.19 -3.23 16 18 C -0.08 -1.62 10.03 22.20 0.22 -1.40 16 19 C -0.16 -2.97 6.32 -19.68 -0.12 -3.10 16 20 C -0.12 -2.03 6.32 -19.73 -0.12 -2.16 16 21 C -0.12 -1.87 9.96 22.34 0.22 -1.65 16 22 C 0.09 1.18 7.63 71.36 0.54 1.72 16 23 O -0.38 -6.62 11.72 -148.98 -1.75 -8.36 16 24 C 0.09 1.34 7.63 71.37 0.54 1.89 16 25 H 0.26 15.51 8.31 -92.70 -0.77 14.73 16 26 H -0.02 -0.97 8.14 -2.39 -0.02 -0.99 16 27 H -0.02 -0.94 8.14 -2.39 -0.02 -0.96 16 28 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 29 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 30 H 0.04 1.67 8.10 -2.39 -0.02 1.65 16 31 H 0.04 1.69 8.10 -2.39 -0.02 1.67 16 32 H 0.13 2.09 8.14 -2.39 -0.02 2.07 16 33 H 0.13 2.06 8.14 -2.39 -0.02 2.04 16 34 H 0.43 3.93 8.82 -92.71 -0.82 3.11 16 35 H 0.12 3.40 6.43 -2.91 -0.02 3.38 16 36 H 0.14 2.34 8.06 -2.91 -0.02 2.32 16 37 H 0.16 1.49 8.06 -2.91 -0.02 1.47 16 38 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 39 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 40 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 41 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 Total: -1.00 -78.09 345.21 2.81 -75.29 By element: Atomic # 1 Polarization: 8.64 SS G_CDS: 0.21 Total: 8.85 kcal Atomic # 6 Polarization: -34.08 SS G_CDS: 3.69 Total: -30.39 kcal Atomic # 7 Polarization: -70.72 SS G_CDS: -1.34 Total: -72.06 kcal Atomic # 8 Polarization: -26.50 SS G_CDS: -1.79 Total: -28.29 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.60 kcal Total: -78.09 2.81 -75.29 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588162961.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.748 kcal (2) G-P(sol) polarization free energy of solvation -78.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds